Wall clock time and date at job start Sat Apr 11 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21280 * 119.99803 * 2 1 4 4 N 1.34776 * 119.99968 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99902 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.47051 * 180.02562 * 5 4 2 7 7 C 1.38373 * 119.85088 * 269.72543 * 6 5 4 8 8 C 1.37949 * 120.14475 * 179.76716 * 7 6 5 9 9 C 1.39594 * 119.85279 * 0.50642 * 8 7 6 10 10 C 1.47807 * 120.14365 * 179.76896 * 9 8 7 11 11 O 1.21553 * 119.99884 * 179.97438 * 10 9 8 12 12 N 1.34767 * 120.00230 * 359.97438 * 10 9 8 13 13 C 1.39384 * 120.00249 * 174.96293 * 12 10 9 14 14 C 1.38624 * 119.58611 * 185.37554 * 13 12 10 15 15 C 1.40806 * 118.79425 * 179.97438 * 14 13 12 16 16 C 1.41544 * 120.99157 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99503 * 151.71963 * 16 15 14 18 18 C 1.40027 * 120.00114 * 331.71012 * 16 15 14 19 19 N 1.30741 * 120.00085 * 350.22324 * 18 16 15 20 20 Si 1.86799 * 119.99947 * 170.21761 * 18 16 15 21 21 H 1.48504 * 109.47303 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47455 * 120.00232 * 20 18 16 23 23 H 1.48506 * 109.47233 * 240.00566 * 20 18 16 24 24 C 1.41171 * 118.00804 * 359.97438 * 15 14 13 25 25 C 1.37589 * 119.02202 * 0.02562 * 24 15 14 26 26 N 1.32075 * 121.11272 * 359.72257 * 25 24 15 27 27 C 1.39590 * 119.70636 * 359.74967 * 9 8 7 28 28 C 1.37949 * 119.85443 * 359.97438 * 27 9 8 29 29 H 1.08999 * 109.46707 * 240.00063 * 1 2 3 30 30 H 1.08998 * 109.47051 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46741 * 120.00583 * 1 2 3 32 32 H 0.97001 * 119.99943 * 0.02562 * 4 2 1 33 33 H 1.08998 * 109.46994 * 60.00258 * 5 4 2 34 34 H 1.09003 * 109.47178 * 300.00370 * 5 4 2 35 35 H 1.08005 * 119.92126 * 0.02562 * 7 6 5 36 36 H 1.08005 * 120.06835 * 180.22932 * 8 7 6 37 37 H 0.97006 * 120.00142 * 354.96500 * 12 10 9 38 38 H 1.07999 * 120.60311 * 0.02562 * 14 13 12 39 39 H 0.97001 * 120.00263 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.49195 * 179.97438 * 24 15 14 41 41 H 1.08009 * 119.44152 * 179.97438 * 25 24 15 42 42 H 1.08005 * 120.07239 * 179.97438 * 27 9 8 43 43 H 1.07998 * 119.93295 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1672 0.0011 6 6 4.1483 -2.5880 0.0010 7 6 4.3828 -3.2357 1.2010 8 6 4.8381 -4.5378 1.2080 9 6 5.0723 -5.1986 0.0009 10 6 5.5650 -6.5921 0.0009 11 8 5.7676 -7.1651 -1.0518 12 7 5.7896 -7.2274 1.1679 13 6 6.1530 -8.5731 1.1703 14 6 6.2728 -9.2476 2.3754 15 6 6.6403 -10.6067 2.3583 16 6 6.7767 -11.3401 3.5613 17 1 6.6044 -12.4062 3.5661 18 6 7.1351 -10.6832 4.7448 19 7 7.5289 -9.4371 4.7074 20 14 7.0504 -11.5874 6.3772 21 1 6.5769 -12.9765 6.1498 22 1 8.3999 -11.6191 6.9962 23 1 6.1064 -10.8855 7.2835 24 6 6.8685 -11.2160 1.1055 25 6 6.7248 -10.4648 -0.0382 26 7 6.3737 -9.1929 0.0203 27 6 4.8387 -4.5375 -1.2062 28 6 4.3780 -3.2373 -1.1991 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6959 -2.0072 0.0005 33 1 4.0089 -0.6532 0.8911 34 1 4.0097 -0.6535 -0.8889 35 1 4.2050 -2.7219 2.1343 36 1 5.0172 -5.0435 2.1455 37 1 5.6984 -6.7483 2.0064 38 1 6.0869 -8.7400 3.3104 39 1 7.7776 -8.9822 5.5273 40 1 7.1526 -12.2563 1.0456 41 1 6.8982 -10.9240 -1.0003 42 1 5.0183 -5.0429 -2.1436 43 1 4.1972 -2.7245 -2.1322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532435724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:34 Heat of formation + Delta-G solvation = -33.596007 kcal Electronic energy + Delta-G solvation = -26997.478944 eV Core-core repulsion = 23006.421246 eV Total energy + Delta-G solvation = -3991.057698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.61770 -40.76629 -40.10339 -39.12852 -36.17892 -35.98736 -35.56281 -32.99573 -32.44184 -32.06338 -30.87343 -30.10863 -27.93165 -27.23829 -24.32861 -23.89452 -23.64378 -22.60719 -21.62680 -21.24693 -19.55349 -19.22467 -18.06039 -17.62659 -17.32375 -17.07257 -16.62195 -16.31311 -16.16122 -16.06966 -16.00147 -15.85088 -15.47069 -14.91190 -14.63088 -14.51214 -14.39286 -14.31689 -14.23389 -13.84502 -13.58536 -13.27682 -13.16048 -12.90161 -12.89132 -12.73267 -12.58752 -12.13735 -12.09094 -11.87127 -11.54139 -11.20695 -11.15592 -11.07006 -10.15533 -10.02688 -9.97390 -9.92113 -9.65894 -8.90879 -8.60902 -6.58885 -0.36218 0.33544 0.77744 0.97707 1.41937 1.53476 1.56361 1.65723 1.83759 2.03236 2.20777 2.39171 2.78535 2.91052 3.41795 3.65758 3.71650 3.73355 3.93573 3.99430 4.12249 4.26560 4.31922 4.53063 4.58961 4.65001 4.70850 4.71516 4.77266 4.82003 4.89632 4.99698 5.05856 5.12800 5.19797 5.22492 5.32795 5.39004 5.43719 5.44838 5.59330 5.80146 5.90795 6.11392 6.43783 6.54021 6.55679 6.77026 6.82920 7.19705 7.24931 7.77975 8.29395 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002093 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.308297 B =13376.513162 C =14692.944440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.506 3.494 3 O -0.601 6.601 4 N -0.717 5.717 5 C 0.162 3.838 6 C -0.077 4.077 7 C -0.098 4.098 8 C -0.087 4.087 9 C -0.135 4.135 10 C 0.536 3.464 11 O -0.522 6.522 12 N -0.645 5.645 13 C 0.330 3.670 14 C -0.250 4.250 15 C 0.113 3.887 16 C -0.484 4.484 17 H 0.084 0.916 18 C 0.037 3.963 19 N -0.819 5.819 20 Si 0.990 3.010 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.292 4.292 25 C 0.111 3.889 26 N -0.577 5.577 27 C -0.072 4.072 28 C -0.099 4.099 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.416 0.584 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.421 0.579 38 H 0.127 0.873 39 H 0.291 0.709 40 H 0.118 0.882 41 H 0.151 0.849 42 H 0.127 0.873 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 15.888 -1.947 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.295 3.705 3 O -0.482 6.482 4 N -0.370 5.370 5 C 0.038 3.962 6 C -0.078 4.078 7 C -0.116 4.116 8 C -0.105 4.105 9 C -0.138 4.138 10 C 0.325 3.675 11 O -0.397 6.397 12 N -0.293 5.293 13 C 0.104 3.896 14 C -0.276 4.276 15 C 0.105 3.895 16 C -0.515 4.515 17 H 0.102 0.898 18 C -0.179 4.179 19 N -0.445 5.445 20 Si 0.810 3.190 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.316 4.316 25 C -0.042 4.042 26 N -0.297 5.297 27 C -0.091 4.091 28 C -0.117 4.117 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.253 0.747 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.260 0.740 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.169 0.831 42 H 0.145 0.855 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.450 16.958 -3.374 20.738 hybrid contribution 0.387 -1.360 1.675 2.191 sum -11.064 15.598 -1.700 19.199 Atomic orbital electron populations 1.21938 0.88356 1.05997 1.06401 1.21550 0.92191 0.82651 0.74127 1.90719 1.72170 1.33233 1.52093 1.46080 1.06590 1.09426 1.74901 1.20156 0.80645 0.91876 1.03496 1.20083 0.98975 0.95400 0.93315 1.21261 0.97938 0.93460 0.98967 1.21520 0.96831 0.95493 0.96699 1.19949 1.05245 0.92296 0.96340 1.19100 0.77832 0.87167 0.83438 1.90815 1.49452 1.67764 1.31652 1.43329 1.67176 1.08498 1.10264 1.18430 0.95782 0.84922 0.90463 1.21583 1.13161 0.97218 0.95609 1.18036 0.86127 0.91939 0.93397 1.19873 1.42586 0.96254 0.92769 0.89831 1.26805 0.91133 0.95641 1.04354 1.69782 1.30719 1.12370 1.31650 0.85036 0.78970 0.79246 0.75733 1.18239 1.19244 1.18562 1.22146 1.14412 1.01463 0.93589 1.22243 0.94980 0.88992 0.98024 1.67345 1.23212 1.11776 1.27326 1.21302 0.95807 0.94928 0.97070 1.21206 0.98275 0.93197 0.99063 0.87190 0.89405 0.87212 0.74709 0.90305 0.90517 0.82551 0.84121 0.73957 0.85506 0.89762 0.86423 0.83143 0.85550 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.32 71.24 0.74 -0.32 16 2 C 0.51 7.46 7.94 87.66 0.70 8.15 16 3 O -0.60 -15.08 17.09 -3.03 -0.05 -15.13 16 4 N -0.72 -7.83 5.55 -466.78 -2.59 -10.42 16 5 C 0.16 2.10 5.79 85.63 0.50 2.59 16 6 C -0.08 -1.09 5.25 -19.80 -0.10 -1.19 16 7 C -0.10 -1.45 9.68 22.23 0.22 -1.23 16 8 C -0.09 -1.76 9.54 22.53 0.21 -1.54 16 9 C -0.13 -3.70 5.87 -20.09 -0.12 -3.82 16 10 C 0.54 20.66 7.73 86.78 0.67 21.34 16 11 O -0.52 -24.63 14.60 -3.88 -0.06 -24.69 16 12 N -0.65 -25.46 5.33 -311.31 -1.66 -27.12 16 13 C 0.33 16.19 7.41 132.78 0.98 17.17 16 14 C -0.25 -12.77 8.59 22.99 0.20 -12.57 16 15 C 0.11 6.00 5.58 -21.12 -0.12 5.88 16 16 C -0.48 -24.74 9.13 23.52 0.21 -24.53 16 17 H 0.08 4.10 7.87 -2.91 -0.02 4.08 16 18 C 0.04 1.73 5.30 85.29 0.45 2.18 16 19 N -0.82 -39.51 10.83 21.84 0.24 -39.28 16 20 Si 0.99 35.41 29.57 68.60 2.03 37.44 16 21 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 22 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 23 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 24 C -0.29 -14.43 9.90 22.84 0.23 -14.20 16 25 C 0.11 5.37 11.15 84.50 0.94 6.32 16 26 N -0.58 -29.87 7.85 -193.56 -1.52 -31.38 16 27 C -0.07 -1.72 9.60 22.53 0.22 -1.50 16 28 C -0.10 -1.62 9.68 22.23 0.22 -1.41 16 29 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.42 2.69 8.46 -92.71 -0.78 1.90 16 33 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 34 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.14 2.49 6.42 -2.91 -0.02 2.47 16 37 H 0.42 13.43 6.75 -92.70 -0.63 12.80 16 38 H 0.13 6.38 6.27 -2.91 -0.02 6.36 16 39 H 0.29 12.51 8.29 -92.71 -0.77 11.74 16 40 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 41 H 0.15 6.22 8.06 -2.91 -0.02 6.20 16 42 H 0.13 3.29 7.65 -2.91 -0.02 3.27 16 43 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -75.98 375.10 2.19 -73.78 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.33 Total: 35.47 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 6.14 Total: 1.33 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -5.53 Total: -108.20 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.11 Total: -39.82 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -75.98 2.19 -73.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.185 kcal (2) G-P(sol) polarization free energy of solvation -75.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds