Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46807 * 2 1 4 4 C 1.46500 * 119.99960 * 85.00410 * 3 2 1 5 5 C 1.50706 * 109.46949 * 84.99526 * 4 3 2 6 6 H 1.07999 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99394 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00338 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99426 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47555 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.46814 * 210.00053 * 9 7 5 12 12 H 1.48496 * 109.47318 * 329.99545 * 9 7 5 13 13 S 1.65602 * 120.00128 * 264.99568 * 3 2 1 14 14 O 1.42107 * 106.39753 * 23.54679 * 13 3 2 15 15 O 1.42100 * 106.40027 * 156.46086 * 13 3 2 16 16 N 1.65597 * 107.21970 * 270.00651 * 13 3 2 17 17 C 1.47428 * 125.64638 * 90.02722 * 16 13 3 18 18 C 1.54911 * 104.82686 * 204.08842 * 17 16 13 19 19 C 1.55158 * 101.58327 * 322.98753 * 18 17 16 20 20 H 1.08999 * 110.72194 * 277.14170 * 19 18 17 21 21 C 1.50706 * 110.71830 * 154.04333 * 19 18 17 22 22 C 1.38676 * 120.41657 * 121.17765 * 21 19 18 23 23 C 1.38620 * 118.41653 * 179.78512 * 22 21 19 24 24 C 1.38224 * 119.16336 * 0.50819 * 23 22 21 25 25 N 1.31858 * 120.76496 * 359.73175 * 24 23 22 26 26 C 1.31884 * 121.72167 * 359.97438 * 25 24 23 27 27 C 1.47022 * 125.64948 * 269.71015 * 16 13 3 28 28 H 1.08998 * 109.47073 * 299.99788 * 1 2 3 29 29 H 1.09000 * 109.46915 * 60.00257 * 1 2 3 30 30 H 1.09003 * 109.47105 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46823 * 239.99628 * 2 1 3 32 32 H 1.08997 * 109.47092 * 120.00246 * 2 1 3 33 33 H 1.09000 * 109.46609 * 324.99706 * 4 3 2 34 34 H 1.09000 * 109.47175 * 204.99500 * 4 3 2 35 35 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 36 36 H 1.08995 * 110.36808 * 322.92448 * 17 16 13 37 37 H 1.08994 * 110.36947 * 85.25268 * 17 16 13 38 38 H 1.08998 * 111.00629 * 81.06606 * 18 17 16 39 39 H 1.09007 * 111.00083 * 204.87887 * 18 17 16 40 40 H 1.07999 * 120.78895 * 0.02562 * 22 21 19 41 41 H 1.08000 * 120.41839 * 180.22311 * 23 22 21 42 42 H 1.08002 * 119.62316 * 179.70764 * 24 23 22 43 43 H 1.07995 * 119.61512 * 179.97438 * 26 25 24 44 44 H 1.08996 * 109.88121 * 298.40287 * 27 16 13 45 45 H 1.09004 * 109.87445 * 59.56123 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.4949 1.7887 1.8823 6 1 4.1725 1.1116 1.3835 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9644 3.8510 10 1 6.5225 2.9382 3.3705 11 1 5.4040 2.0491 5.3298 12 1 5.9193 0.5912 3.4619 13 16 2.4122 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4448 15 8 2.3056 3.5186 -1.1998 16 7 4.0144 1.8137 -1.7137 17 6 4.5490 0.6593 -2.4589 18 6 5.9960 0.4843 -1.9340 19 6 6.4369 1.9590 -1.7384 20 1 6.7803 2.3870 -2.6802 21 6 7.5113 2.0592 -0.6862 22 6 8.7496 2.6006 -0.9966 23 6 9.7058 2.6769 0.0041 24 6 9.3990 2.2043 1.2663 25 7 8.2122 1.6910 1.5242 26 6 7.2765 1.6079 0.5985 27 6 5.1390 2.6510 -1.2712 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3618 1.8096 1.9453 34 1 2.0922 3.1802 1.0756 35 1 3.2795 3.5879 4.5378 36 1 3.9592 -0.2331 -2.2500 37 1 4.5563 0.8686 -3.5285 38 1 6.0055 -0.0552 -0.9869 39 1 6.6217 -0.0165 -2.6728 40 1 8.9627 2.9580 -1.9933 41 1 10.6798 3.0960 -0.2010 42 1 10.1401 2.2557 2.0503 43 1 6.3163 1.1807 0.8470 44 1 5.0625 3.6415 -1.7197 45 1 5.1350 2.7326 -0.1843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563058154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = -39.073000 kcal Electronic energy + Delta-G solvation = -29319.088576 eV Core-core repulsion = 25463.237328 eV Total energy + Delta-G solvation = -3855.851247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31472 -38.09770 -36.67931 -36.00629 -35.21635 -33.14015 -32.69028 -31.84304 -29.95179 -29.68675 -28.21384 -26.59843 -23.78310 -23.33888 -23.08501 -22.20469 -21.56113 -20.36434 -18.47756 -17.33909 -17.18888 -16.83104 -16.43511 -16.27760 -15.58667 -15.28721 -14.91421 -14.38036 -13.98549 -13.83625 -13.63377 -13.47861 -13.32579 -13.05223 -13.01477 -12.81722 -12.55639 -12.16297 -12.00425 -11.96184 -11.67706 -11.57871 -11.52464 -11.33562 -11.16202 -11.03874 -10.96026 -10.86472 -10.70325 -10.43631 -10.34371 -10.00028 -9.75612 -9.68276 -9.24294 -8.89019 -8.59937 -8.43379 -8.04540 -6.07542 -4.15911 1.14864 1.24520 1.37529 3.38449 3.45449 3.47681 3.57508 3.87819 4.10447 4.43245 4.44057 4.59587 4.66016 4.79612 4.91907 5.02104 5.10348 5.14268 5.23798 5.27198 5.38860 5.44929 5.50774 5.61525 5.67505 5.76976 5.81084 5.83186 5.93149 6.04846 6.08784 6.11200 6.13923 6.21426 6.32386 6.39285 6.46790 6.61909 6.66617 6.77972 6.81541 7.37139 7.45675 7.66859 7.87533 8.14742 8.17538 8.88074 9.51423 10.99209 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.006126 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.418950 B = 4569.710250 C = 6388.128493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.245 3.755 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.268 1.268 11 H -0.294 1.294 12 H -0.268 1.268 13 S 2.797 3.203 14 O -0.995 6.995 15 O -0.974 6.974 16 N -1.016 6.016 17 C 0.126 3.874 18 C -0.122 4.122 19 C -0.053 4.053 20 H 0.091 0.909 21 C -0.124 4.124 22 C -0.073 4.073 23 C -0.177 4.177 24 C 0.091 3.909 25 N -0.476 5.476 26 C 0.115 3.885 27 C 0.125 3.875 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.068 0.932 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.391 -5.188 -10.922 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.579 4.579 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.716 3.284 10 H -0.194 1.194 11 H -0.220 1.220 12 H -0.193 1.193 13 S 2.807 3.193 14 O -0.979 6.979 15 O -0.959 6.959 16 N -0.854 5.854 17 C 0.000 4.000 18 C -0.161 4.161 19 C -0.073 4.073 20 H 0.109 0.891 21 C -0.127 4.127 22 C -0.099 4.099 23 C -0.197 4.197 24 C -0.066 4.066 25 N -0.184 5.184 26 C -0.042 4.042 27 C 0.000 4.000 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.179 0.821 44 H 0.086 0.914 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.497 -4.834 -10.436 14.300 hybrid contribution 1.416 0.007 0.115 1.421 sum 9.913 -4.826 -10.321 15.103 Atomic orbital electron populations 1.22207 0.96926 1.01381 1.02392 1.20976 0.93667 0.82954 1.02004 1.57807 1.78109 1.22939 1.24311 1.19202 0.97425 0.92150 0.78926 1.21472 1.02156 1.28227 1.06088 0.92075 1.24964 0.97284 0.94664 0.96813 1.69946 1.35984 1.29707 1.17026 0.86682 0.83560 0.80149 0.78008 1.19374 1.22033 1.19257 1.01425 0.71711 0.73345 0.72827 1.93537 1.69967 1.76577 1.57824 1.93573 1.85516 1.30797 1.85990 1.59150 1.23677 1.34334 1.68287 1.21865 0.94167 0.88419 0.95524 1.22918 0.95487 0.95274 1.02393 1.21123 0.92734 0.96868 0.96596 0.89071 1.20694 0.95414 1.00334 0.96231 1.21437 0.92508 0.96446 0.99537 1.22061 1.00560 1.02418 0.94659 1.22788 0.93942 0.94283 0.95618 1.67798 1.01362 1.14005 1.35261 1.22921 0.98343 0.94724 0.88223 1.21831 0.83431 0.93118 1.01633 0.92038 0.92697 0.92349 0.92111 0.90183 0.94392 0.93304 0.92691 0.90913 0.91669 0.90036 0.90107 0.85036 0.85116 0.83193 0.82075 0.91399 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.25 6.06 -4.04 -0.02 2.22 16 3 N -0.99 -20.25 2.82 -115.66 -0.33 -20.58 16 4 C 0.25 6.01 5.43 -5.19 -0.03 5.98 16 5 C -0.54 -13.75 8.95 -34.44 -0.31 -14.06 16 6 H 0.06 1.48 7.10 -52.49 -0.37 1.10 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 9 Si 0.89 21.38 28.27 -169.99 -4.81 16.57 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 S 2.80 56.07 6.31 -107.50 -0.68 55.40 16 14 O -0.99 -20.21 16.69 -57.17 -0.95 -21.17 16 15 O -0.97 -22.93 16.27 -57.17 -0.93 -23.86 16 16 N -1.02 -16.86 3.75 -111.42 -0.42 -17.28 16 17 C 0.13 1.61 6.98 -2.53 -0.02 1.59 16 18 C -0.12 -1.37 6.48 -24.58 -0.16 -1.52 16 19 C -0.05 -0.65 3.16 -89.93 -0.28 -0.93 16 20 H 0.09 0.90 8.00 -51.93 -0.42 0.49 16 21 C -0.12 -1.67 4.95 -104.48 -0.52 -2.19 16 22 C -0.07 -0.82 9.82 -39.28 -0.39 -1.21 16 23 C -0.18 -1.96 10.11 -39.45 -0.40 -2.36 16 24 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 25 N -0.48 -8.26 9.95 -13.26 -0.13 -8.40 16 26 C 0.11 1.91 8.86 -17.55 -0.16 1.76 16 27 C 0.13 2.02 6.49 -3.06 -0.02 2.00 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.92 7.61 -51.93 -0.40 0.53 16 32 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 33 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.00 7.12 -51.93 -0.37 0.63 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.13 1.09 8.03 -52.49 -0.42 0.67 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.16 2.95 6.21 -52.49 -0.33 2.63 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 1.69 6.39 -51.93 -0.33 1.36 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -33.04 377.89 -10.80 -43.84 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.77 Total: 2.85 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.21 Total: -8.31 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -0.14 Total: -71.01 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.88 Total: -45.02 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.81 Total: 16.57 kcal Atomic # 16 Polarization: 56.07 SS G_CDS: -0.68 Total: 55.40 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.04 -10.80 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563058154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.766 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds