Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47118 * 2 1 4 4 C 1.46505 * 119.99845 * 274.99945 * 3 2 1 5 5 C 1.50698 * 109.46933 * 275.00183 * 4 3 2 6 6 H 1.08003 * 120.00293 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00299 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99629 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47397 * 89.99613 * 9 7 5 11 11 H 1.48498 * 109.47040 * 209.99698 * 9 7 5 12 12 H 1.48500 * 109.46875 * 329.99312 * 9 7 5 13 13 S 1.65599 * 120.00377 * 94.99699 * 3 2 1 14 14 O 1.42103 * 106.40175 * 156.46211 * 13 3 2 15 15 O 1.42096 * 106.40112 * 23.54040 * 13 3 2 16 16 N 1.65604 * 107.21537 * 270.00239 * 13 3 2 17 17 C 1.47019 * 125.64377 * 269.95156 * 16 13 3 18 18 C 1.54332 * 107.26809 * 181.10024 * 17 16 13 19 19 C 1.55157 * 102.94104 * 22.19421 * 18 17 16 20 20 H 1.09002 * 111.00367 * 82.57305 * 19 18 17 21 21 C 1.50695 * 111.03680 * 206.41050 * 19 18 17 22 22 C 1.38677 * 120.41879 * 235.11635 * 21 19 18 23 23 C 1.38628 * 118.41963 * 179.77752 * 22 21 19 24 24 C 1.38230 * 119.16157 * 0.52295 * 23 22 21 25 25 N 1.31855 * 120.76419 * 359.71670 * 24 23 22 26 26 C 1.31884 * 121.72374 * 0.02562 * 25 24 23 27 27 C 1.47418 * 125.64996 * 90.00271 * 16 13 3 28 28 H 1.08997 * 109.47404 * 299.99881 * 1 2 3 29 29 H 1.09004 * 109.47078 * 60.00649 * 1 2 3 30 30 H 1.09007 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47464 * 239.99359 * 2 1 3 32 32 H 1.09004 * 109.47078 * 119.99351 * 2 1 3 33 33 H 1.09007 * 109.47035 * 34.99683 * 4 3 2 34 34 H 1.08995 * 109.47511 * 154.99691 * 4 3 2 35 35 H 0.96995 * 120.00293 * 180.02562 * 8 7 5 36 36 H 1.08993 * 109.88762 * 300.51853 * 17 16 13 37 37 H 1.09003 * 109.88200 * 61.53160 * 17 16 13 38 38 H 1.09000 * 110.72090 * 263.83388 * 18 17 16 39 39 H 1.08996 * 110.72335 * 140.56189 * 18 17 16 40 40 H 1.07999 * 120.78776 * 0.02823 * 22 21 19 41 41 H 1.08002 * 120.41749 * 180.21483 * 23 22 21 42 42 H 1.08002 * 119.61481 * 179.74541 * 24 23 22 43 43 H 1.07999 * 119.61947 * 179.97438 * 26 25 24 44 44 H 1.09003 * 110.36673 * 36.99220 * 27 16 13 45 45 H 1.09000 * 110.46196 * 274.72136 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4947 1.7887 -1.8824 6 1 4.1724 1.1116 -1.3836 7 6 3.8530 2.3612 -3.0844 8 7 3.0281 3.1862 -3.6916 9 14 5.5099 1.9652 -3.8506 10 1 5.3749 0.7823 -4.7381 11 1 5.9788 3.1290 -4.6449 12 1 6.4933 1.6696 -2.7779 13 16 2.4121 2.1203 1.4286 14 8 3.3283 3.1572 1.1048 15 8 2.7095 1.0801 2.3499 16 7 1.0430 2.8643 1.9893 17 6 0.6309 4.2423 1.6850 18 6 -0.6862 4.5052 2.4453 19 6 -0.6459 3.4524 3.5843 20 1 -0.0442 3.8057 4.4218 21 6 -2.0372 3.0915 4.0369 22 6 -2.3942 3.2098 5.3717 23 6 -3.6866 2.8709 5.7415 24 6 -4.5668 2.4191 4.7762 25 7 -4.1911 2.3145 3.5167 26 6 -2.9716 2.6328 3.1281 27 6 0.0361 2.2548 2.8769 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.3617 1.8096 -1.9454 34 1 2.0921 3.1802 -1.0758 35 1 3.2799 3.5887 -4.5374 36 1 1.3977 4.9410 2.0193 37 1 0.4709 4.3532 0.6124 38 1 -1.5459 4.3385 1.7964 39 1 -0.7004 5.5154 2.8542 40 1 -1.6835 3.5614 6.1049 41 1 -4.0001 2.9540 6.7717 42 1 -5.5742 2.1491 5.0570 43 1 -2.7001 2.5336 2.0875 44 1 0.5181 1.6065 3.6086 45 1 -0.6940 1.6920 2.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563058156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = -38.874886 kcal Electronic energy + Delta-G solvation = -28285.737941 eV Core-core repulsion = 24429.895285 eV Total energy + Delta-G solvation = -3855.842656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64447 -38.33782 -36.67322 -36.03143 -35.18100 -33.42651 -32.66937 -32.18958 -30.08824 -29.82246 -28.44999 -26.60160 -24.16713 -23.61642 -23.13043 -22.26872 -21.61777 -20.66758 -18.49231 -17.58877 -17.46319 -16.81699 -16.69114 -16.27258 -15.63102 -15.54826 -15.02654 -14.50724 -14.18916 -14.03645 -13.87626 -13.53662 -13.41313 -13.32758 -13.29458 -13.03362 -12.83555 -12.35219 -12.10289 -11.96945 -11.79031 -11.67446 -11.53128 -11.37189 -11.29033 -11.18317 -11.01684 -10.92560 -10.82844 -10.48741 -10.37884 -10.04983 -9.98362 -9.75836 -9.66898 -9.17463 -8.84870 -8.43777 -8.07679 -6.06382 -4.10065 0.81079 1.00389 1.15191 3.31577 3.37963 3.42938 3.46268 3.51438 4.01059 4.17989 4.36493 4.44014 4.45433 4.51212 4.64575 4.70530 4.81550 4.96656 5.02043 5.19529 5.27068 5.28233 5.34269 5.41846 5.49531 5.58141 5.65085 5.72790 5.74245 5.76785 5.82984 5.86694 5.98548 6.02111 6.13704 6.24504 6.31931 6.42212 6.48738 6.59686 6.69596 7.24016 7.41392 7.62644 7.72427 7.91408 8.20960 8.92220 9.55077 11.02208 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.003080 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.485204 B = 9087.275476 C = 9222.773023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.989 5.989 4 C 0.259 3.741 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.791 3.209 14 O -0.958 6.958 15 O -0.994 6.994 16 N -1.022 6.022 17 C 0.120 3.880 18 C -0.118 4.118 19 C -0.058 4.058 20 H 0.096 0.904 21 C -0.120 4.120 22 C -0.071 4.071 23 C -0.172 4.172 24 C 0.091 3.909 25 N -0.482 5.482 26 C 0.106 3.894 27 C 0.125 3.875 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.263 0.737 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.082 0.918 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.441 0.458 16.889 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 N -0.831 5.831 4 C 0.137 3.863 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.801 3.199 14 O -0.942 6.942 15 O -0.978 6.978 16 N -0.861 5.861 17 C -0.005 4.005 18 C -0.157 4.157 19 C -0.078 4.078 20 H 0.114 0.886 21 C -0.122 4.122 22 C -0.097 4.097 23 C -0.192 4.192 24 C -0.066 4.066 25 N -0.190 5.190 26 C -0.052 4.052 27 C -0.001 4.001 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.171 0.829 43 H 0.174 0.826 44 H 0.100 0.900 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.106 0.237 16.469 21.685 hybrid contribution 1.074 0.173 -0.097 1.092 sum -13.033 0.410 16.371 20.929 Atomic orbital electron populations 1.22295 0.97259 1.01465 1.02035 1.21144 0.93090 0.83242 1.03484 1.57805 1.80789 1.21324 1.23194 1.19019 0.97347 0.91015 0.78918 1.21491 1.02076 1.27640 1.05540 0.92223 1.24921 0.97361 0.94811 0.96880 1.69915 1.36135 1.30255 1.17179 0.86522 0.84060 0.77836 0.79206 1.20622 1.21063 1.19721 1.01685 0.72589 0.72944 0.72681 1.93626 1.58704 1.57820 1.84048 1.93512 1.83096 1.57600 1.63612 1.59428 1.41576 1.22739 1.62317 1.21676 0.95985 0.82586 1.00277 1.22761 0.97877 0.98971 0.96115 1.21302 0.91618 0.96249 0.98655 0.88619 1.20689 0.96651 1.00492 0.94387 1.21537 0.96305 0.96391 0.95485 1.22142 0.94596 1.01205 1.01224 1.22787 0.99880 0.95520 0.88429 1.67736 1.17955 1.14652 1.18633 1.22720 0.88210 0.94010 1.00213 1.22049 0.90854 0.94809 0.92364 0.93389 0.91877 0.92210 0.89681 0.90704 0.94708 0.94622 0.92711 0.91054 0.90892 0.90269 0.89929 0.84760 0.84835 0.82905 0.82591 0.90003 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.12 2.04 6.40 -4.04 -0.03 2.01 16 3 N -0.99 -20.43 2.82 -115.66 -0.33 -20.76 16 4 C 0.26 6.40 5.10 -5.19 -0.03 6.37 16 5 C -0.53 -14.78 9.38 -34.44 -0.32 -15.10 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -25.95 13.29 55.43 0.74 -25.22 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 S 2.79 55.96 6.31 -107.50 -0.68 55.28 16 14 O -0.96 -23.03 16.69 -57.17 -0.95 -23.98 16 15 O -0.99 -20.76 16.01 -57.17 -0.92 -21.67 16 16 N -1.02 -15.41 3.75 -111.42 -0.42 -15.83 16 17 C 0.12 1.58 6.99 -3.06 -0.02 1.56 16 18 C -0.12 -1.12 6.36 -24.89 -0.16 -1.28 16 19 C -0.06 -0.54 3.27 -89.63 -0.29 -0.83 16 20 H 0.10 0.81 8.01 -51.93 -0.42 0.40 16 21 C -0.12 -1.08 5.01 -104.48 -0.52 -1.60 16 22 C -0.07 -0.55 9.83 -39.28 -0.39 -0.93 16 23 C -0.17 -1.22 10.11 -39.44 -0.40 -1.62 16 24 C 0.09 0.76 11.18 -17.54 -0.20 0.57 16 25 N -0.48 -5.22 10.36 -13.25 -0.14 -5.36 16 26 C 0.11 1.06 9.47 -17.55 -0.17 0.90 16 27 C 0.13 1.50 6.35 -2.53 -0.02 1.48 16 28 H 0.05 0.62 6.00 -51.93 -0.31 0.31 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 32 H 0.07 1.25 6.91 -51.93 -0.36 0.89 16 33 H 0.03 0.87 8.11 -51.92 -0.42 0.45 16 34 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.71 6.91 -51.93 -0.36 0.35 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 0.76 8.04 -52.49 -0.42 0.34 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.16 1.47 7.03 -52.49 -0.37 1.10 16 44 H 0.08 1.00 7.78 -51.93 -0.40 0.60 16 45 H 0.07 0.76 5.05 -51.93 -0.26 0.49 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -34.39 377.76 -10.92 -45.31 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.64 Total: -1.45 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.25 Total: -8.86 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.15 Total: -67.16 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.87 Total: -45.65 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 55.96 SS G_CDS: -0.68 Total: 55.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.39 -10.92 -45.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563058156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.436 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds