Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47478 * 2 1 4 4 C 1.46505 * 119.99722 * 274.94108 * 3 2 1 5 5 C 1.50699 * 109.47129 * 263.11181 * 4 3 2 6 6 H 1.07994 * 120.00290 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99649 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00652 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47433 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46995 * 119.99892 * 9 7 5 12 12 H 1.48502 * 109.47427 * 239.99868 * 9 7 5 13 13 C 1.34779 * 120.00560 * 94.93822 * 3 2 1 14 14 O 1.21364 * 119.99441 * 3.69327 * 13 3 2 15 15 C 1.49304 * 120.00223 * 183.69077 * 13 3 2 16 16 O 1.21377 * 120.00016 * 354.26536 * 15 13 3 17 17 N 1.34775 * 119.99665 * 174.26778 * 15 13 3 18 18 C 1.38752 * 119.99910 * 179.97438 * 17 15 13 19 19 N 1.29680 * 124.94733 * 179.97438 * 18 17 15 20 20 C 1.31910 * 116.92738 * 180.02562 * 19 18 17 21 21 C 1.50705 * 122.71203 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47340 * 299.99930 * 21 20 19 23 23 C 1.52998 * 109.47303 * 60.00452 * 21 20 19 24 24 C 1.33529 * 114.56918 * 0.02562 * 20 19 18 25 25 C 1.50696 * 125.97186 * 179.97438 * 24 20 19 26 26 S 1.70972 * 124.94257 * 0.31450 * 18 17 15 27 27 H 1.09001 * 109.47288 * 300.00641 * 1 2 3 28 28 H 1.09000 * 109.46937 * 60.00061 * 1 2 3 29 29 H 1.08992 * 109.47438 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47288 * 239.99359 * 2 1 3 31 31 H 1.09002 * 109.46925 * 119.99392 * 2 1 3 32 32 H 1.09000 * 109.46929 * 23.11540 * 4 3 2 33 33 H 1.09005 * 109.46612 * 143.10812 * 4 3 2 34 34 H 0.96994 * 120.00654 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00465 * 0.02562 * 17 15 13 36 36 H 1.09000 * 109.46535 * 180.02562 * 21 20 19 37 37 H 1.09005 * 109.46736 * 60.00259 * 22 21 20 38 38 H 1.08997 * 109.46873 * 179.97438 * 22 21 20 39 39 H 1.08995 * 109.47214 * 300.00756 * 22 21 20 40 40 H 1.09005 * 109.47010 * 299.99886 * 23 21 20 41 41 H 1.09004 * 109.46959 * 59.99532 * 23 21 20 42 42 H 1.08996 * 109.47253 * 179.97438 * 23 21 20 43 43 H 1.08998 * 109.47163 * 90.00287 * 25 24 20 44 44 H 1.08998 * 109.47193 * 329.99726 * 25 24 20 45 45 H 1.09008 * 109.46703 * 210.00033 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1595 2.1081 -1.2641 5 6 3.5890 2.0256 -1.7341 6 1 4.3193 1.4860 -1.1496 7 6 3.9645 2.6398 -2.9099 8 7 3.0752 3.2974 -3.6216 9 14 5.7365 2.5381 -3.4922 10 1 6.5324 1.7464 -2.5202 11 1 5.7834 1.8795 -4.8224 12 1 6.3024 3.9071 -3.5975 13 6 2.3378 1.9831 1.1628 14 8 2.2849 1.3602 2.2031 15 6 2.7567 3.4161 1.1712 16 8 2.9103 4.0097 0.1237 17 7 2.9643 4.0506 2.3420 18 6 3.3542 5.3822 2.3499 19 7 3.5791 6.0841 3.4169 20 6 3.9427 7.3397 3.2403 21 6 4.2369 8.2715 4.3877 22 6 2.9917 8.4078 5.2662 23 6 5.3895 7.7069 5.2206 24 6 4.0291 7.7183 1.9627 25 6 4.4195 9.0878 1.4698 26 16 3.5999 6.3389 0.9544 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5043 1.6643 -2.0136 33 1 1.8857 3.1527 -1.1150 34 1 3.3395 3.7299 -4.4486 35 1 2.8420 3.5762 3.1792 36 1 4.5153 9.2507 3.9982 37 1 2.7129 7.4286 5.6557 38 1 3.2047 9.0813 6.0963 39 1 2.1706 8.8099 4.6728 40 1 5.1107 6.7278 5.6100 41 1 6.2766 7.6099 4.5946 42 1 5.6025 8.3811 6.0501 43 1 5.4999 9.1301 1.3323 44 1 4.1166 9.8372 2.2011 45 1 3.9242 9.2866 0.5193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565246289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -19.612422 kcal Electronic energy + Delta-G solvation = -27703.458231 eV Core-core repulsion = 23848.450858 eV Total energy + Delta-G solvation = -3855.007373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69409 -39.83345 -38.29018 -36.10743 -35.24388 -33.78095 -32.74013 -31.86492 -30.61008 -27.32467 -27.16466 -26.83377 -25.09691 -23.68714 -23.15224 -22.46401 -21.27849 -20.22153 -18.46950 -17.65219 -16.94819 -16.73081 -16.50526 -16.00082 -15.64374 -15.07874 -14.88648 -14.71958 -14.33962 -14.08090 -14.00016 -13.59486 -13.11518 -13.06952 -13.02357 -12.79928 -12.52448 -12.45858 -12.19480 -12.12137 -12.07638 -11.75864 -11.72206 -11.27073 -11.08057 -10.94438 -10.87192 -10.72183 -10.60104 -10.38490 -10.35146 -10.04833 -9.74000 -9.46795 -8.95356 -8.82556 -8.39493 -8.02168 -7.85269 -6.10509 -4.14017 0.90188 1.38752 1.86431 2.09346 2.48519 2.97570 3.25768 3.34059 3.37482 3.65932 3.85736 4.38384 4.54495 4.80068 4.85635 5.06998 5.14486 5.26047 5.26499 5.29872 5.44548 5.55227 5.60258 5.60354 5.65844 5.72108 5.77156 5.83849 5.89728 6.02096 6.07606 6.08951 6.20117 6.21364 6.28770 6.45115 6.47385 6.57743 6.93092 7.26856 7.31701 7.77708 7.92932 7.98142 8.02284 8.11565 8.44512 8.87517 9.49923 10.98058 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.003944 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.226164 B = 7098.455793 C = 8769.653448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.553 5.553 4 C 0.220 3.780 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.072 3.928 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.516 3.484 14 O -0.554 6.554 15 C 0.488 3.512 16 O -0.419 6.419 17 N -0.609 5.609 18 C 0.245 3.755 19 N -0.510 5.510 20 C 0.092 3.908 21 C -0.018 4.018 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.298 4.298 25 C -0.066 4.066 26 S 0.260 5.740 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.263 0.737 35 H 0.428 0.572 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 7.871 11.756 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 N -0.283 5.283 4 C 0.101 3.899 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.131 4.131 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.298 3.702 14 O -0.435 6.435 15 C 0.269 3.731 16 O -0.286 6.286 17 N -0.262 5.262 18 C -0.122 4.122 19 N -0.233 5.233 20 C -0.041 4.041 21 C -0.039 4.039 22 C -0.198 4.198 23 C -0.197 4.197 24 C -0.420 4.420 25 C -0.125 4.125 26 S 0.512 5.488 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.267 0.733 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.169 7.460 10.646 13.052 hybrid contribution 1.147 0.126 0.654 1.327 sum -0.022 7.586 11.301 13.611 Atomic orbital electron populations 1.22116 0.96031 1.01798 1.02306 1.21489 0.93954 0.82519 1.03449 1.48311 1.58387 1.13618 1.08022 1.20136 0.97948 0.93879 0.77909 1.21254 0.94103 1.33904 1.06910 0.92633 1.24792 0.97300 0.94708 0.96319 1.69917 1.33587 1.34013 1.14992 0.86552 0.85031 0.77973 0.78552 1.19871 1.20938 1.20766 1.19191 0.80022 0.86170 0.84832 1.90689 1.55340 1.65484 1.31996 1.20810 0.79884 0.89607 0.82791 1.90888 1.43255 1.65646 1.28819 1.42563 1.65141 1.06976 1.11508 1.23234 1.02736 0.91024 0.95193 1.66025 1.21066 1.06337 1.29861 1.19500 1.01242 0.89880 0.93511 1.19724 0.96312 0.95832 0.91994 1.21766 0.96799 1.02320 0.98871 1.21760 0.97262 1.01590 0.99119 1.26227 1.14776 1.03527 0.97456 1.20096 1.01343 0.89909 1.01136 1.85440 1.61340 0.97786 1.04219 0.92792 0.92078 0.91804 0.89680 0.90184 0.94632 0.90926 0.92770 0.73259 0.89869 0.91814 0.92580 0.92931 0.91805 0.92914 0.92578 0.91199 0.90958 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.11 1.83 6.18 -4.04 -0.02 1.81 16 3 N -0.55 -11.30 2.48 -175.62 -0.44 -11.73 16 4 C 0.22 5.22 4.79 -5.19 -0.02 5.19 16 5 C -0.52 -13.77 8.31 -34.44 -0.29 -14.05 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 8 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.52 10.43 7.66 -11.65 -0.09 10.34 16 14 O -0.55 -11.21 15.97 5.48 0.09 -11.12 16 15 C 0.49 9.68 7.72 -11.65 -0.09 9.59 16 16 O -0.42 -9.34 9.83 5.47 0.05 -9.29 16 17 N -0.61 -10.52 5.39 -13.55 -0.07 -10.60 16 18 C 0.24 4.24 8.18 -87.55 -0.72 3.52 16 19 N -0.51 -8.26 10.48 -11.32 -0.12 -8.38 16 20 C 0.09 1.31 5.31 -84.20 -0.45 0.86 16 21 C -0.02 -0.19 3.18 -91.77 -0.29 -0.49 16 22 C -0.14 -1.43 9.14 37.16 0.34 -1.09 16 23 C -0.14 -1.46 9.14 37.16 0.34 -1.12 16 24 C -0.30 -4.22 6.58 -35.96 -0.24 -4.45 16 25 C -0.07 -0.70 9.91 36.00 0.36 -0.34 16 26 S 0.26 4.45 20.21 -107.50 -2.17 2.28 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.41 8.11 -51.93 -0.42 0.98 16 31 H 0.08 1.32 7.24 -51.93 -0.38 0.94 16 32 H 0.04 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.07 1.86 5.41 -51.93 -0.28 1.58 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.43 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.08 0.78 6.29 -51.93 -0.33 0.45 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.63 6.80 -51.93 -0.35 0.27 16 45 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -29.73 386.14 -8.72 -38.45 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.71 Total: 2.86 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.89 Total: 9.64 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.11 Total: -54.73 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.14 Total: -20.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -2.17 Total: 2.28 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.73 -8.72 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565246289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.837 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds