Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38998 * 120.00169 * 180.02562 * 2 1 3 5 5 C 1.39143 * 119.70480 * 4.98885 * 4 2 1 6 6 C 1.38301 * 119.09452 * 180.02562 * 5 4 2 7 7 C 1.38876 * 118.50916 * 0.02562 * 6 5 4 8 8 S 1.76202 * 120.33714 * 179.97438 * 7 6 5 9 9 O 1.42094 * 106.40359 * 203.53922 * 8 7 6 10 10 O 1.42099 * 106.40208 * 336.45591 * 8 7 6 11 11 N 1.65597 * 107.21947 * 89.99533 * 8 7 6 12 12 C 1.46920 * 120.63422 * 269.72503 * 11 8 7 13 13 C 1.53627 * 108.54798 * 126.36600 * 12 11 8 14 14 C 1.53042 * 109.24083 * 54.85562 * 13 12 11 15 15 C 1.50689 * 109.45064 * 178.49799 * 14 13 12 16 16 H 1.07995 * 120.00336 * 120.05844 * 15 14 13 17 17 C 1.37879 * 119.99981 * 300.06745 * 15 14 13 18 18 N 1.31512 * 120.00013 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99971 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47240 * 59.99493 * 19 17 15 21 21 H 1.48503 * 109.46861 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46780 * 299.99650 * 19 17 15 23 23 C 1.53039 * 109.53799 * 298.51321 * 14 13 12 24 24 C 1.46932 * 120.62733 * 89.99850 * 11 8 7 25 25 C 1.38023 * 119.32773 * 359.97438 * 7 6 5 26 26 N 1.31970 * 120.85818 * 359.72620 * 25 7 6 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 32 32 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 33 33 H 1.07997 * 120.45305 * 0.03037 * 5 4 2 34 34 H 1.08005 * 120.74223 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.58835 * 246.20160 * 12 11 8 36 36 H 1.09006 * 109.58887 * 6.62146 * 12 11 8 37 37 H 1.08998 * 109.63329 * 294.86540 * 13 12 11 38 38 H 1.08998 * 109.43457 * 174.72339 * 13 12 11 39 39 H 1.09006 * 109.45662 * 58.53322 * 14 13 12 40 40 H 0.97003 * 120.00018 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.49820 * 301.41504 * 23 14 13 42 42 H 1.08997 * 109.52167 * 181.32727 * 23 14 13 43 43 H 1.08995 * 109.58668 * 353.38047 * 24 11 8 44 44 H 1.09002 * 109.58398 * 113.65892 * 24 11 8 45 45 H 1.08004 * 119.56655 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1600 -1.2037 -0.0005 5 6 1.4621 -2.4028 -0.1062 6 6 2.1663 -3.5932 -0.1049 7 6 3.5500 -3.5446 0.0029 8 16 4.4948 -5.0319 0.0102 9 8 5.7191 -4.7264 0.6635 10 8 3.6180 -6.0622 0.4449 11 7 4.8779 -5.3770 -1.5635 12 6 3.9914 -6.2136 -2.3836 13 6 3.6583 -5.4521 -3.6757 14 6 4.9595 -5.0459 -4.3714 15 6 4.6384 -4.3307 -5.6583 16 1 4.9715 -3.3146 -5.8091 17 6 3.9190 -4.9736 -6.6433 18 7 3.5136 -6.2112 -6.4599 19 14 3.5202 -4.0868 -8.2384 20 1 4.7823 -3.6931 -8.9148 21 1 2.7442 -4.9897 -9.1260 22 1 2.7178 -2.8729 -7.9425 23 6 5.7599 -4.1155 -3.4571 24 6 6.1140 -4.8572 -2.1642 25 6 4.1776 -2.3195 0.1044 26 7 3.4806 -1.1990 0.0946 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 1.4892 2.0973 0.0005 31 1 2.8242 1.3264 0.8899 32 1 2.8241 1.3265 -0.8900 33 1 0.3852 -2.4040 -0.1881 34 1 1.6515 -4.5392 -0.1851 35 1 4.4943 -7.1495 -2.6271 36 1 3.0736 -6.4219 -1.8337 37 1 3.0799 -4.5599 -3.4362 38 1 3.0780 -6.0959 -4.3367 39 1 5.5488 -5.9369 -4.5884 40 1 3.0078 -6.6636 -7.1530 41 1 5.1616 -3.2358 -3.2196 42 1 6.6753 -3.8075 -3.9621 43 1 6.5971 -4.1703 -1.4694 44 1 6.7875 -5.6845 -2.3879 45 1 5.2536 -2.2773 0.1880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566874056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = -26.574466 kcal Electronic energy + Delta-G solvation = -28404.435633 eV Core-core repulsion = 24549.126363 eV Total energy + Delta-G solvation = -3855.309270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37294 -37.68910 -37.01441 -36.80842 -35.57275 -33.41331 -32.64435 -30.84692 -30.76519 -30.04060 -28.53886 -25.77987 -25.69567 -23.51792 -22.49832 -22.31507 -21.89935 -19.53747 -18.48202 -17.98063 -17.40539 -16.95561 -16.82263 -16.18481 -15.60384 -15.35827 -14.94011 -14.57863 -14.52765 -13.93913 -13.66246 -13.61911 -13.32428 -13.11717 -13.05415 -12.89996 -12.76962 -12.71310 -12.59231 -12.23709 -12.08602 -11.89676 -11.79339 -11.34647 -11.09537 -10.94150 -10.81592 -10.67022 -10.48734 -10.36597 -10.05539 -9.86607 -9.60533 -9.56070 -9.19597 -8.97507 -8.40963 -8.23506 -7.97690 -6.01461 -4.07570 0.64819 0.95263 1.26395 2.59487 3.25013 3.28722 3.33905 3.36537 3.68194 4.07272 4.31042 4.40934 4.47835 4.60396 4.78978 4.97320 4.98942 5.07941 5.16395 5.21732 5.28244 5.31163 5.38103 5.59342 5.60460 5.70470 5.77474 5.85863 5.93275 6.11937 6.17473 6.31639 6.35824 6.45345 6.47466 6.57430 6.74829 6.93509 7.03044 7.09471 7.20329 7.42923 7.70904 7.88629 7.96135 8.08019 8.42522 8.95793 9.57154 11.03807 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009435 B = 0.004509 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.813415 B = 6208.727615 C = 8074.201894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.612 5.612 3 C 0.101 3.899 4 C 0.439 3.561 5 C -0.256 4.256 6 C 0.065 3.935 7 C -0.784 4.784 8 S 2.701 3.299 9 O -0.968 6.968 10 O -0.966 6.966 11 N -0.989 5.989 12 C 0.119 3.881 13 C -0.123 4.123 14 C 0.051 3.949 15 C -0.512 4.512 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.279 1.279 23 C -0.124 4.124 24 C 0.122 3.878 25 C 0.253 3.747 26 N -0.551 5.551 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 9.322 13.557 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.324 5.324 3 C -0.041 4.041 4 C 0.204 3.796 5 C -0.281 4.281 6 C 0.039 3.961 7 C -0.875 4.875 8 S 2.791 3.209 9 O -0.958 6.958 10 O -0.956 6.956 11 N -0.828 5.828 12 C -0.006 4.006 13 C -0.162 4.162 14 C 0.033 3.967 15 C -0.551 4.551 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.205 1.205 23 C -0.163 4.163 24 C -0.003 4.003 25 C 0.092 3.908 26 N -0.269 5.269 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.120 0.880 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.518 9.715 14.250 17.829 hybrid contribution -1.186 0.445 -1.447 1.923 sum -5.703 10.160 12.803 17.311 Atomic orbital electron populations 1.21821 0.78026 1.03239 1.02104 1.46418 1.05492 1.03367 1.77082 1.21593 0.96554 0.83401 1.02584 1.18564 0.88714 0.85805 0.86548 1.21445 1.01211 0.91784 1.13694 1.20993 0.91581 0.98782 0.84790 1.31694 1.08326 1.21236 1.26270 1.01601 0.73206 0.73402 0.72729 1.93531 1.43626 1.85607 1.73030 1.93534 1.67473 1.54510 1.80073 1.57598 1.31416 1.63250 1.30584 1.21809 0.91865 0.93500 0.93388 1.22081 1.01312 0.99314 0.93477 1.18574 0.91805 0.94393 0.91947 1.21176 1.34276 0.99566 1.00034 0.92913 1.24943 0.95853 0.94841 0.98236 1.69830 1.38122 1.11077 1.33908 0.86720 0.78430 0.79498 0.83671 1.20329 1.21316 1.20524 1.22006 1.00489 0.99094 0.94686 1.21535 0.84361 0.98231 0.96136 1.22151 0.99547 0.85278 0.83841 1.67273 1.06025 1.31415 1.22163 0.92377 0.90734 0.90820 0.91093 0.92071 0.92059 0.84326 0.83427 0.91428 0.91016 0.94462 0.87957 0.95337 0.92947 0.93121 0.92205 0.90705 0.91327 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.02 59.85 0.60 1.24 16 2 N -0.61 -6.54 3.39 -189.66 -0.64 -7.18 16 3 C 0.10 0.91 10.19 59.85 0.61 1.52 16 4 C 0.44 5.99 7.37 -155.02 -1.14 4.85 16 5 C -0.26 -3.29 9.19 -39.22 -0.36 -3.65 16 6 C 0.06 0.91 9.64 -39.32 -0.38 0.53 16 7 C -0.78 -11.90 5.99 -39.42 -0.24 -12.13 16 8 S 2.70 43.95 5.70 -107.50 -0.61 43.34 16 9 O -0.97 -16.86 16.01 -57.18 -0.92 -17.77 16 10 O -0.97 -17.30 16.06 -57.18 -0.92 -18.22 16 11 N -0.99 -16.86 3.28 -113.27 -0.37 -17.23 16 12 C 0.12 2.17 6.41 -3.49 -0.02 2.15 16 13 C -0.12 -2.67 5.17 -26.38 -0.14 -2.81 16 14 C 0.05 1.20 2.06 -91.73 -0.19 1.01 16 15 C -0.51 -13.49 8.56 -34.45 -0.29 -13.78 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.33 11.31 55.43 0.63 -23.70 16 19 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 24 C 0.12 2.04 6.38 -3.71 -0.02 2.02 16 25 C 0.25 3.78 10.67 -17.57 -0.19 3.59 16 26 N -0.55 -8.25 9.57 -12.44 -0.12 -8.37 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 29 H 0.07 0.47 6.39 -51.93 -0.33 0.14 16 30 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.37 6.27 -52.49 -0.33 1.04 16 34 H 0.15 1.85 7.70 -52.48 -0.40 1.44 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.20 7.12 -51.93 -0.37 0.83 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.10 7.13 -51.93 -0.37 0.73 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.17 2.21 7.62 -52.48 -0.40 1.81 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -32.23 371.72 -11.05 -43.29 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.68 Total: 0.94 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.00 Total: -16.45 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.51 Total: -56.48 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.83 Total: -35.99 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 43.95 SS G_CDS: -0.61 Total: 43.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.23 -11.05 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566874056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.711 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds