Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 S 1.65596 * 119.99782 * 2 1 4 4 O 1.42101 * 106.40006 * 311.45172 * 3 2 1 5 5 O 1.42107 * 106.40022 * 178.53854 * 3 2 1 6 6 C 1.76192 * 107.22202 * 64.99477 * 3 2 1 7 7 C 1.38881 * 120.33516 * 90.00194 * 6 3 2 8 8 C 1.38304 * 118.50808 * 180.02562 * 7 6 3 9 9 C 1.39134 * 119.09592 * 359.97438 * 8 7 6 10 10 N 1.39002 * 119.70708 * 179.97438 * 9 8 7 11 11 C 1.46842 * 110.99918 * 180.02562 * 10 9 8 12 12 C 1.53036 * 109.52190 * 185.84375 * 11 10 9 13 13 C 1.53123 * 109.27788 * 300.81892 * 12 11 10 14 14 C 1.52999 * 109.52253 * 177.56250 * 13 12 11 15 15 C 1.50700 * 109.46901 * 175.00216 * 14 13 12 16 16 H 1.08000 * 120.00582 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00121 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99487 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00132 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47232 * 120.00269 * 19 17 15 22 22 H 1.48502 * 109.46960 * 240.00223 * 19 17 15 23 23 C 1.53123 * 109.16001 * 57.65365 * 13 12 11 24 24 C 1.46848 * 111.00054 * 304.21848 * 10 9 8 25 25 N 1.32404 * 120.58634 * 0.28633 * 9 8 7 26 26 C 1.31964 * 121.62284 * 359.42613 * 25 9 8 27 27 H 1.08999 * 109.47410 * 300.00351 * 1 2 3 28 28 H 1.08999 * 109.46632 * 60.00758 * 1 2 3 29 29 H 1.09004 * 109.46920 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99724 * 179.97438 * 2 1 3 31 31 H 1.08003 * 120.74596 * 359.97438 * 7 6 3 32 32 H 1.08004 * 120.45167 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.46766 * 65.82708 * 11 10 9 34 34 H 1.09000 * 109.46420 * 305.85441 * 11 10 9 35 35 H 1.09000 * 109.50632 * 60.76184 * 12 11 10 36 36 H 1.09006 * 109.50216 * 180.87978 * 12 11 10 37 37 H 1.09007 * 109.52268 * 297.75177 * 13 12 11 38 38 H 1.09000 * 109.47025 * 294.99413 * 14 13 12 39 39 H 1.08994 * 109.47373 * 55.00327 * 14 13 12 40 40 H 0.97004 * 119.99344 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.50416 * 182.40514 * 23 13 12 42 42 H 1.08997 * 109.49749 * 62.28489 * 23 13 12 43 43 H 1.09003 * 109.46014 * 294.17602 * 24 10 9 44 44 H 1.08995 * 109.46374 * 54.13632 * 24 10 9 45 45 H 1.08000 * 119.57263 * 180.29456 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7121 2.2328 -1.0217 5 8 3.6739 1.1003 0.0348 6 6 1.9377 2.2416 1.5252 7 6 2.7371 2.0199 2.6390 8 6 2.4235 2.6730 3.8171 9 6 1.3242 3.5255 3.8462 10 7 0.9972 4.1879 5.0237 11 6 -0.1899 5.0325 4.8400 12 6 -0.4337 5.8546 6.1075 13 6 -0.6368 4.9073 7.2932 14 6 -0.8206 5.7235 8.5742 15 6 -1.1422 4.7970 9.7184 16 1 -1.2092 3.7325 9.5489 17 6 -1.3509 5.3083 10.9818 18 7 -1.2698 6.6046 11.1881 19 14 -1.7502 4.1599 12.3999 20 1 -1.7847 2.7592 11.9080 21 1 -0.7091 4.2905 13.4508 22 1 -3.0748 4.5172 12.9683 23 6 0.5931 4.0059 7.4328 24 6 0.8067 3.2374 6.1267 25 7 0.5834 3.7066 2.7639 26 6 0.8623 3.1010 1.6251 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.9500 -0.8400 0.0004 31 1 3.5842 1.3520 2.5866 32 1 3.0241 2.5239 4.7023 33 1 -1.0573 4.4022 4.6435 34 1 -0.0307 5.7043 3.9965 35 1 0.4275 6.4953 6.2970 36 1 -1.3240 6.4699 5.9766 37 1 -1.5209 4.2931 7.1215 38 1 0.0985 6.2667 8.7939 39 1 -1.6380 6.4318 8.4395 40 1 -1.4169 6.9643 12.0769 41 1 0.4365 3.3004 8.2487 42 1 1.4704 4.6175 7.6431 43 1 -0.0655 2.6158 5.9239 44 1 1.6898 2.6051 6.2179 45 1 0.2383 3.2765 0.7613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566972394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -38.907439 kcal Electronic energy + Delta-G solvation = -27069.006552 eV Core-core repulsion = 23213.162484 eV Total energy + Delta-G solvation = -3855.844068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98262 -38.54214 -37.57559 -36.18768 -35.43274 -34.89384 -32.96109 -32.52414 -30.68910 -30.44432 -27.75045 -26.44941 -24.73651 -24.39563 -22.88904 -22.37066 -20.95664 -19.97941 -19.15836 -18.47174 -17.99891 -17.38219 -17.04436 -16.45410 -16.22893 -15.26747 -15.06347 -14.86180 -14.55100 -14.42131 -14.28956 -13.94897 -13.62410 -13.56512 -13.44083 -13.27827 -13.04223 -12.58183 -12.44049 -12.34223 -12.21315 -12.04382 -11.75744 -11.56601 -11.29742 -11.00069 -10.89025 -10.83005 -10.54023 -10.40111 -10.23460 -10.09567 -10.04108 -9.79470 -9.64669 -9.18094 -8.96156 -8.44358 -8.38949 -6.03799 -4.05899 0.02536 0.41248 0.93767 2.63785 3.09872 3.26817 3.34952 3.37411 3.40824 3.51495 3.97216 4.10573 4.41562 4.47564 4.56184 4.73087 4.77827 4.98185 5.04380 5.16640 5.26779 5.28048 5.29751 5.33481 5.36275 5.43101 5.49052 5.53958 5.63365 5.73977 5.95524 6.01448 6.10449 6.25133 6.29883 6.44356 6.51378 6.67100 6.91344 6.91879 7.01961 7.08075 7.60768 7.63066 7.77529 7.95943 8.37982 9.00719 9.58082 11.07444 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.002118 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.621248 B =13213.968403 C =13453.855396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.122 6.122 3 S 2.709 3.291 4 O -0.957 6.957 5 O -0.961 6.961 6 C -0.777 4.777 7 C 0.044 3.956 8 C -0.212 4.212 9 C 0.374 3.626 10 N -0.472 5.472 11 C 0.067 3.933 12 C -0.118 4.118 13 C -0.084 4.084 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.103 4.103 24 C 0.060 3.940 25 N -0.533 5.533 26 C 0.232 3.768 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.419 0.581 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 -13.761 -21.842 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.797 3.203 4 O -0.947 6.947 5 O -0.951 6.951 6 C -0.868 4.868 7 C 0.018 3.982 8 C -0.235 4.235 9 C 0.142 3.858 10 N -0.186 5.186 11 C -0.059 4.059 12 C -0.155 4.155 13 C -0.102 4.102 14 C -0.009 4.009 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.140 4.140 24 C -0.065 4.065 25 N -0.248 5.248 26 C 0.070 3.930 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.253 0.747 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.353 -12.232 -22.028 25.758 hybrid contribution -0.156 -1.669 1.440 2.210 sum 5.196 -13.902 -20.587 25.379 Atomic orbital electron populations 1.21511 0.78322 1.04400 1.02159 1.55338 1.16284 1.24430 1.92080 1.01477 0.72751 0.72539 0.73566 1.93589 1.78768 1.68443 1.53864 1.93591 1.30809 1.83458 1.87223 1.31496 1.11273 1.21089 1.22953 1.21089 0.94468 0.92742 0.89930 1.21692 0.99932 1.01630 1.00266 1.20424 0.89396 0.85620 0.90394 1.58957 1.37217 1.20073 1.02324 1.22137 0.88778 0.95591 0.99433 1.21814 1.01948 0.98267 0.93515 1.21295 0.96184 0.96431 0.96340 1.19113 0.97135 0.94803 0.89825 1.21263 1.47497 0.93475 0.93249 0.92654 1.25028 0.95612 0.94949 0.98909 1.69975 1.50066 1.11280 1.22050 0.86589 0.77984 0.81099 0.82622 1.19817 1.21060 1.21082 1.21646 0.99591 0.99195 0.93598 1.22490 1.00853 0.92862 0.90271 1.67859 1.29983 1.26865 1.00095 1.22369 0.90263 0.85791 0.94617 0.92190 0.91093 0.89815 0.74747 0.83212 0.83501 0.93100 0.90058 0.91457 0.91223 0.92629 0.96432 0.96550 0.93070 0.89801 0.91317 0.93447 0.90299 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.14 59.85 0.67 1.02 16 2 N -1.12 -6.03 6.19 -16.63 -0.10 -6.13 16 3 S 2.71 23.59 5.75 -107.50 -0.62 22.97 16 4 O -0.96 -10.83 17.02 -57.17 -0.97 -11.81 16 5 O -0.96 -10.75 17.36 -57.17 -0.99 -11.74 16 6 C -0.78 -7.50 5.96 -39.42 -0.24 -7.74 16 7 C 0.04 0.42 9.64 -39.32 -0.38 0.05 16 8 C -0.21 -2.32 9.18 -39.22 -0.36 -2.68 16 9 C 0.37 4.94 6.41 -155.02 -0.99 3.95 16 10 N -0.47 -6.69 4.68 -173.24 -0.81 -7.50 16 11 C 0.07 0.98 4.65 -3.84 -0.02 0.96 16 12 C -0.12 -1.94 5.38 -26.65 -0.14 -2.08 16 13 C -0.08 -1.59 2.20 -90.49 -0.20 -1.79 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 15 C -0.52 -13.82 8.45 -34.44 -0.29 -14.11 16 16 H 0.06 1.43 7.08 -52.49 -0.37 1.06 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.10 -1.73 5.15 -26.65 -0.14 -1.87 16 24 C 0.06 0.82 5.24 -3.83 -0.02 0.80 16 25 N -0.53 -6.96 8.68 -12.44 -0.11 -7.06 16 26 C 0.23 2.49 10.68 -17.57 -0.19 2.30 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.42 1.42 8.96 -34.47 -0.31 1.11 16 31 H 0.15 1.08 7.71 -52.48 -0.40 0.68 16 32 H 0.15 1.37 7.14 -52.48 -0.37 1.00 16 33 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.08 1.49 7.05 -51.93 -0.37 1.13 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.91 6.67 -51.93 -0.35 0.56 16 45 H 0.17 1.43 7.62 -52.49 -0.40 1.03 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -34.21 375.55 -11.50 -45.71 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.75 Total: -1.39 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -2.52 Total: -19.18 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.29 Total: -46.25 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.97 Total: -23.55 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 23.59 SS G_CDS: -0.62 Total: 22.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.21 -11.50 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566972394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.807 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds