Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99829 * 2 1 4 4 C 1.50703 * 109.47040 * 66.04426 * 3 2 1 5 5 H 1.07995 * 119.99931 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99652 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00365 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99905 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47277 * 89.99280 * 8 6 4 10 10 H 1.48499 * 109.46943 * 209.99582 * 8 6 4 11 11 H 1.48498 * 109.46694 * 329.99661 * 8 6 4 12 12 C 1.39840 * 111.00227 * 236.04481 * 2 1 3 13 13 C 1.38952 * 120.04517 * 63.67969 * 12 2 1 14 14 C 1.38161 * 120.08401 * 179.73999 * 13 12 2 15 15 C 1.38194 * 120.17144 * 0.51662 * 14 13 12 16 16 N 1.48022 * 119.95904 * 179.74230 * 15 14 13 17 17 O 1.21798 * 119.99789 * 5.36636 * 16 15 14 18 18 O 1.21801 * 119.99912 * 185.35788 * 16 15 14 19 19 C 1.38902 * 120.08550 * 359.75926 * 15 14 13 20 20 N 1.39844 * 120.04682 * 179.97438 * 19 15 14 21 21 C 1.47013 * 111.00391 * 241.66757 * 20 19 15 22 22 C 1.53099 * 109.26142 * 177.60260 * 21 20 19 23 23 O 1.43014 * 109.25376 * 56.84935 * 22 21 20 24 24 C 1.43017 * 113.74073 * 301.32974 * 23 22 21 25 25 C 1.47011 * 111.00141 * 118.02969 * 20 19 15 26 26 C 1.38869 * 120.04545 * 243.95699 * 12 2 1 27 27 F 1.35109 * 120.08186 * 0.02562 * 26 12 2 28 28 H 1.09008 * 109.46855 * 60.00341 * 1 2 3 29 29 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47693 * 300.00459 * 1 2 3 31 31 H 1.09002 * 109.47067 * 306.04537 * 3 2 1 32 32 H 1.09001 * 109.47186 * 186.04244 * 3 2 1 33 33 H 0.97002 * 120.00192 * 180.02562 * 7 6 4 34 34 H 1.07999 * 119.95228 * 359.97438 * 13 12 2 35 35 H 1.08000 * 119.90983 * 180.27644 * 14 13 12 36 36 H 1.08999 * 109.50362 * 297.54163 * 21 20 19 37 37 H 1.09005 * 109.50382 * 57.67147 * 21 20 19 38 38 H 1.08996 * 109.50592 * 296.91775 * 22 21 20 39 39 H 1.08996 * 109.54669 * 176.80222 * 22 21 20 40 40 H 1.09000 * 109.50239 * 298.73339 * 24 23 22 41 41 H 1.09004 * 109.54565 * 178.63029 * 24 23 22 42 42 H 1.09002 * 109.50757 * 302.33066 * 25 20 19 43 43 H 1.08999 * 109.50918 * 62.41833 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0738 1.5115 2.0484 6 6 2.0266 3.3495 1.5284 7 7 2.7118 4.0019 0.6150 8 14 1.5828 4.1869 3.1382 9 1 2.6601 3.9508 4.1325 10 1 1.4299 5.6465 2.9112 11 1 0.3055 3.6291 3.6505 12 6 1.9702 -0.7292 -1.0829 13 6 1.7216 -0.3044 -2.3823 14 6 2.2210 -1.0213 -3.4527 15 6 2.9601 -2.1687 -3.2360 16 7 3.4880 -2.9362 -4.3864 17 8 3.3554 -2.5057 -5.5180 18 8 4.0550 -3.9982 -4.2012 19 6 3.2080 -2.6029 -1.9401 20 7 3.9555 -3.7644 -1.7217 21 6 3.1568 -4.7815 -1.0226 22 6 3.9919 -6.0540 -0.8578 23 8 5.1989 -5.7387 -0.1585 24 6 6.0017 -4.7517 -0.8117 25 6 5.1869 -3.4660 -0.9762 26 6 2.7121 -1.8819 -0.8612 27 9 2.9507 -2.3015 0.4008 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5610 1.9274 -0.8309 32 1 3.0797 1.3445 -0.1082 33 1 2.9863 4.9181 0.7769 34 1 1.1406 0.5893 -2.5557 35 1 2.0299 -0.6861 -4.4614 36 1 2.8679 -4.4059 -0.0410 37 1 2.2629 -5.0057 -1.6048 38 1 4.2355 -6.4592 -1.8398 39 1 3.4246 -6.7916 -0.2901 40 1 6.3038 -5.1192 -1.7925 41 1 6.8880 -4.5467 -0.2112 42 1 5.7751 -2.7300 -1.5243 43 1 4.9306 -3.0688 0.0059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571243800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -27.728760 kcal Electronic energy + Delta-G solvation = -30884.547101 eV Core-core repulsion = 26462.974601 eV Total energy + Delta-G solvation = -4421.572500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.04293 -42.03764 -40.28104 -39.30769 -37.10077 -36.33186 -35.24854 -32.86262 -31.41705 -30.76545 -30.54669 -27.65521 -27.24168 -26.18204 -24.62331 -24.26843 -22.99667 -22.63988 -20.92458 -20.59355 -19.29935 -18.57890 -17.49677 -17.37764 -16.95782 -16.68482 -16.46326 -16.09860 -15.75665 -15.56976 -15.34657 -15.21621 -14.86283 -14.52359 -14.34073 -13.93844 -13.83247 -13.17824 -13.03686 -12.73450 -12.44321 -12.38827 -12.23953 -11.78206 -11.64348 -11.50963 -11.33744 -11.23911 -11.06627 -10.95325 -10.90042 -10.83329 -10.77653 -10.27162 -9.93860 -9.62833 -9.23656 -9.01276 -8.79778 -8.69093 -7.98036 -6.26716 -4.30403 -0.15012 0.64629 1.40078 1.49628 3.00639 3.13277 3.18949 3.25742 3.28042 3.69094 3.76058 4.08638 4.30078 4.51605 4.62518 4.66308 4.67479 4.79901 4.92703 5.00070 5.04674 5.09816 5.20433 5.28830 5.37566 5.43046 5.57049 5.59795 5.67838 5.70535 5.74987 5.81025 5.96698 6.04594 6.34950 6.42254 6.44910 6.72694 6.82839 6.87885 6.94584 7.45440 7.54581 7.80022 7.88194 8.13754 8.75233 9.35215 10.83953 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.003586 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.880061 B = 7805.801977 C = 8916.410704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.514 5.514 3 C 0.199 3.801 4 C -0.517 4.517 5 H 0.067 0.933 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.903 3.097 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.145 3.855 13 C -0.127 4.127 14 C -0.051 4.051 15 C -0.020 4.020 16 N 0.035 4.965 17 O -0.197 6.197 18 O -0.107 6.107 19 C 0.117 3.883 20 N -0.482 5.482 21 C 0.015 3.985 22 C 0.070 3.930 23 O -0.383 6.383 24 C 0.070 3.930 25 C 0.012 3.988 26 C 0.086 3.914 27 F -0.107 7.107 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.004 0.996 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -15.235 -6.141 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.236 5.236 3 C 0.076 3.924 4 C -0.555 4.555 5 H 0.086 0.914 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.048 3.952 13 C -0.148 4.148 14 C -0.072 4.072 15 C -0.105 4.105 16 N 0.556 4.444 17 O -0.401 6.401 18 O -0.337 6.337 19 C 0.020 3.980 20 N -0.204 5.204 21 C -0.111 4.111 22 C -0.007 4.007 23 O -0.302 6.302 24 C -0.007 4.007 25 C -0.114 4.114 26 C 0.062 3.938 27 F -0.085 7.085 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.022 0.978 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.392 -15.126 -5.454 16.084 hybrid contribution -0.571 1.417 0.527 1.616 sum -0.179 -13.709 -4.928 14.569 Atomic orbital electron populations 1.22320 0.85452 1.00241 1.02439 1.60078 1.08670 1.19217 1.35621 1.19940 0.95638 0.78792 0.97997 1.21028 1.36020 0.97045 1.01407 0.91447 1.24977 0.94877 0.97158 0.97255 1.69937 1.37563 1.11735 1.34078 0.86412 0.79009 0.78444 0.83102 1.20424 1.21102 1.19685 1.19618 0.92456 0.91642 0.91488 1.21859 1.00861 1.00925 0.91187 1.20933 0.93384 0.90976 1.01881 1.20666 1.07741 0.97389 0.84667 1.43231 0.98864 1.00731 1.01532 1.94527 1.63865 1.73600 1.08100 1.94567 1.39086 1.08366 1.91642 1.18302 0.96803 0.92959 0.89983 1.59986 1.05243 1.05890 1.49302 1.22968 0.97028 0.92857 0.98285 1.22620 0.85393 0.94775 0.97947 1.87991 1.33618 1.59167 1.49374 1.22624 0.92978 0.86495 0.98567 1.23006 0.90727 0.99726 0.97981 1.18091 1.01047 0.95024 0.79638 1.91516 1.92180 1.88847 1.36004 0.95515 0.93114 0.89155 0.97813 0.94935 0.92537 0.82642 0.82394 0.92077 0.89509 0.91462 0.88142 0.91522 0.88029 0.89441 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.09 60.06 0.55 1.24 16 2 N -0.51 -10.03 4.56 -180.27 -0.82 -10.85 16 3 C 0.20 4.68 4.31 -4.97 -0.02 4.66 16 4 C -0.52 -13.42 8.52 -34.44 -0.29 -13.71 16 5 H 0.07 1.73 7.10 -52.49 -0.37 1.36 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 12 C 0.15 2.44 4.67 -83.71 -0.39 2.05 16 13 C -0.13 -1.82 8.70 -39.35 -0.34 -2.17 16 14 C -0.05 -0.67 9.54 -39.63 -0.38 -1.05 16 15 C -0.02 -0.29 6.86 -79.71 -0.55 -0.83 16 16 N 0.04 0.54 4.45 34.08 0.15 0.69 16 17 O -0.20 -3.07 18.45 -29.46 -0.54 -3.62 16 18 O -0.11 -1.65 17.10 -29.46 -0.50 -2.15 16 19 C 0.12 1.70 4.73 -83.71 -0.40 1.30 16 20 N -0.48 -6.36 2.57 -170.75 -0.44 -6.80 16 21 C 0.01 0.17 5.32 -3.71 -0.02 0.15 16 22 C 0.07 0.70 7.01 37.21 0.26 0.96 16 23 O -0.38 -4.57 10.83 -35.23 -0.38 -4.95 16 24 C 0.07 0.75 7.01 37.21 0.26 1.01 16 25 C 0.01 0.15 5.32 -3.71 -0.02 0.13 16 26 C 0.09 1.37 6.71 -39.10 -0.26 1.11 16 27 F -0.11 -1.84 13.22 2.25 0.03 -1.81 16 28 H 0.03 0.41 7.46 -51.92 -0.39 0.02 16 29 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.09 1.61 6.86 -51.93 -0.36 1.26 16 31 H 0.00 0.10 7.49 -51.93 -0.39 -0.29 16 32 H 0.03 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.16 2.10 7.16 -52.49 -0.38 1.73 16 35 H 0.16 1.73 7.61 -52.49 -0.40 1.33 16 36 H 0.06 0.78 6.25 -51.93 -0.32 0.46 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.88 6.28 -51.93 -0.33 0.55 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -29.20 358.12 -8.54 -37.74 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.44 Total: -1.21 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.70 Total: -3.65 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.37 Total: -41.19 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.43 Total: -10.72 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.81 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.20 -8.54 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571243800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.013 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds