Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40299 * 126.09128 * 2 1 4 4 C 1.31068 * 108.27131 * 180.09620 * 3 2 1 5 5 C 1.39296 * 108.07833 * 359.64405 * 4 3 2 6 6 C 1.34323 * 126.09515 * 179.74541 * 2 1 3 7 7 C 1.50830 * 128.03270 * 0.12034 * 6 2 1 8 8 C 1.53358 * 108.37892 * 163.41173 * 7 6 2 9 9 C 1.53108 * 109.50908 * 49.94847 * 8 7 6 10 10 C 1.50839 * 127.90049 * 180.37218 * 5 4 3 11 11 H 1.09005 * 109.68291 * 283.08615 * 10 5 4 12 12 N 1.46506 * 109.68172 * 43.63546 * 10 5 4 13 13 S 1.65600 * 119.99911 * 234.01259 * 12 10 5 14 14 O 1.42102 * 104.27672 * 180.02562 * 13 12 10 15 15 O 1.42104 * 104.27720 * 307.86862 * 13 12 10 16 16 C 1.81402 * 104.45036 * 63.94045 * 13 12 10 17 17 C 1.53004 * 109.46905 * 172.94510 * 16 13 12 18 18 C 1.50693 * 115.55111 * 65.64466 * 17 16 13 19 19 H 1.08002 * 120.00197 * 268.35464 * 18 17 16 20 20 C 1.37877 * 119.99959 * 88.35929 * 18 17 16 21 21 N 1.31516 * 120.00103 * 176.87883 * 20 18 17 22 22 Si 1.86803 * 119.99834 * 356.87210 * 20 18 17 23 23 H 1.48509 * 109.46800 * 87.46511 * 22 20 18 24 24 H 1.48501 * 109.47017 * 207.45881 * 22 20 18 25 25 H 1.48495 * 109.47171 * 327.46365 * 22 20 18 26 26 C 1.53000 * 117.49621 * 279.97428 * 17 16 13 27 27 C 1.53000 * 117.49455 * 211.31606 * 17 16 13 28 28 H 1.09000 * 109.47495 * 270.25107 * 1 2 3 29 29 H 1.09001 * 109.47229 * 30.25172 * 1 2 3 30 30 H 1.09003 * 109.46805 * 150.25453 * 1 2 3 31 31 H 1.08003 * 125.96071 * 179.90849 * 4 3 2 32 32 H 1.09003 * 109.67881 * 283.13620 * 7 6 2 33 33 H 1.08994 * 109.68174 * 43.68673 * 7 6 2 34 34 H 1.09003 * 109.46330 * 169.95226 * 8 7 6 35 35 H 1.08997 * 109.47029 * 289.93204 * 8 7 6 36 36 H 1.09000 * 109.46604 * 49.72655 * 9 8 7 37 37 H 1.08996 * 109.46766 * 169.71911 * 9 8 7 38 38 H 0.96999 * 119.99847 * 54.01136 * 12 10 5 39 39 H 1.08998 * 109.47190 * 292.93900 * 16 13 12 40 40 H 1.08991 * 109.47014 * 52.94456 * 16 13 12 41 41 H 0.97005 * 120.00061 * 180.02562 * 21 20 18 42 42 H 1.08998 * 117.50203 * 0.02562 * 26 17 16 43 43 H 1.09000 * 117.49970 * 145.02038 * 26 17 16 44 44 H 1.08994 * 117.49664 * 214.97683 * 27 17 16 45 45 H 1.08998 * 117.50337 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7326 -0.0021 5 6 3.5455 -0.6603 0.0048 6 6 2.2563 -1.0854 0.0048 7 6 1.8438 -2.5362 0.0088 8 6 3.0539 -3.3840 -0.4020 9 6 4.2699 -2.9789 0.4354 10 6 4.7399 -1.5815 0.0131 11 1 5.1758 -1.6266 -0.9850 12 7 5.7373 -1.0876 0.9659 13 16 7.2962 -0.8267 0.4719 14 8 7.9603 -0.3612 1.6388 15 8 7.6759 -2.0470 -0.1493 16 6 7.1652 0.5000 -0.7583 17 6 8.5671 0.9568 -1.1669 18 6 9.3966 -0.0665 -1.8988 19 1 10.0523 -0.7244 -1.3476 20 6 9.3187 -0.1628 -3.2719 21 7 10.0875 -1.0134 -3.9162 22 14 8.1208 0.9147 -4.2173 23 1 8.7696 2.2111 -4.5397 24 1 7.7276 0.2315 -5.4758 25 1 6.9134 1.1581 -3.3880 26 6 9.2983 1.9185 -0.2281 27 6 8.7446 2.4241 -1.5626 28 1 -0.3634 0.0045 1.0276 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3633 -0.8923 -0.5099 31 1 4.4105 1.3708 -0.0040 32 1 1.5173 -2.8222 1.0087 33 1 1.0308 -2.6886 -0.7010 34 1 2.8324 -4.4381 -0.2344 35 1 3.2696 -3.2217 -1.4579 36 1 3.9967 -2.9668 1.4905 37 1 5.0753 -3.6961 0.2769 38 1 5.4845 -0.9134 1.8860 39 1 6.6334 0.1311 -1.6353 40 1 6.6198 1.3405 -0.3295 41 1 10.0329 -1.0809 -4.8823 42 1 8.7809 2.2254 0.6808 43 1 10.3795 1.8113 -0.1401 44 1 9.4616 2.6492 -2.3520 45 1 7.8626 3.0638 -1.5323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589127671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = 28.614690 kcal Electronic energy + Delta-G solvation = -28735.643237 eV Core-core repulsion = 24882.727149 eV Total energy + Delta-G solvation = -3852.916089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69025 -37.33148 -37.10204 -36.25150 -35.12189 -34.52775 -32.95837 -32.14124 -29.66784 -28.55266 -28.50011 -26.79626 -25.50658 -23.27901 -22.04382 -21.69612 -20.98192 -19.71766 -19.02491 -18.52877 -17.30817 -16.97480 -16.54388 -16.02411 -15.45902 -15.25162 -15.01670 -14.78276 -14.39325 -14.16134 -13.96167 -13.87099 -13.65135 -13.18669 -13.11893 -12.95079 -12.74248 -12.62038 -12.33540 -12.09238 -11.84999 -11.39377 -11.24241 -11.19989 -11.16823 -11.09284 -10.91135 -10.79117 -10.64181 -10.59600 -10.32990 -10.11642 -9.73809 -9.41089 -9.34362 -9.13352 -8.64818 -8.45273 -8.37900 -6.14673 -4.22478 0.96992 1.69731 2.31353 2.65259 3.24873 3.34720 3.36336 3.44089 4.27748 4.28259 4.37039 4.45969 4.60374 4.66885 4.82257 4.84257 4.87902 4.92895 4.95458 5.04917 5.10812 5.14759 5.22943 5.33507 5.35956 5.46514 5.55622 5.60089 5.76161 5.86603 5.93858 5.99651 6.05506 6.07381 6.16482 6.22110 6.34682 6.46046 6.52905 6.68678 6.84917 6.90873 7.08992 7.27754 7.57887 7.61708 8.39150 8.90387 9.46416 10.96714 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.004310 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.880201 B = 6494.449263 C = 6799.987602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.371 5.371 3 N -0.302 5.302 4 C 0.067 3.933 5 C -0.250 4.250 6 C 0.094 3.906 7 C -0.056 4.056 8 C -0.113 4.113 9 C -0.130 4.130 10 C 0.233 3.767 11 H 0.097 0.903 12 N -1.122 6.122 13 S 2.613 3.387 14 O -0.969 6.969 15 O -0.939 6.939 16 C -0.578 4.578 17 C 0.002 3.998 18 C -0.508 4.508 19 H 0.087 0.913 20 C 0.089 3.911 21 N -0.883 5.883 22 Si 0.874 3.126 23 H -0.274 1.274 24 H -0.292 1.292 25 H -0.258 1.258 26 C -0.176 4.176 27 C -0.187 4.187 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.411 0.589 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.267 0.733 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.158 -1.311 7.825 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.152 5.152 3 N -0.123 5.123 4 C -0.118 4.118 5 C -0.263 4.263 6 C -0.035 4.035 7 C -0.095 4.095 8 C -0.152 4.152 9 C -0.169 4.169 10 C 0.124 3.876 11 H 0.115 0.885 12 N -0.877 5.877 13 S 2.708 3.292 14 O -0.959 6.959 15 O -0.928 6.928 16 C -0.709 4.709 17 C -0.001 4.001 18 C -0.545 4.545 19 H 0.105 0.895 20 C -0.115 4.115 21 N -0.518 5.518 22 Si 0.702 3.298 23 H -0.200 1.200 24 H -0.219 1.219 25 H -0.182 1.182 26 C -0.214 4.214 27 C -0.225 4.225 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.198 0.802 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.243 0.757 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.233 -0.897 7.772 22.628 hybrid contribution -0.756 0.683 -0.697 1.235 sum -21.989 -0.213 7.075 23.100 Atomic orbital electron populations 1.21819 0.74571 1.04384 1.03246 1.48234 1.06367 1.03603 1.56983 1.77566 1.01497 1.07204 1.25993 1.23586 0.95137 0.94530 0.98520 1.20200 0.94044 0.94061 1.17998 1.20929 0.90841 0.90696 1.01065 1.20400 0.99228 0.87231 1.02620 1.21561 0.93423 0.99165 1.01066 1.22023 0.98131 0.96500 1.00296 1.18959 0.85517 0.90633 0.92456 0.88546 1.56084 1.29222 1.82657 1.19696 1.05020 0.71892 0.76839 0.75466 1.93518 1.71869 1.83509 1.47015 1.93588 1.79661 1.41405 1.78192 1.30340 1.06795 1.17081 1.16698 1.18846 0.89419 0.90727 1.01094 1.20341 1.24871 1.17401 0.91919 0.89524 1.24939 0.94659 0.94557 0.97382 1.69892 1.37840 1.35448 1.08652 0.86940 0.82803 0.80757 0.79317 1.20028 1.21867 1.18194 1.23021 1.00751 1.05140 0.92458 1.23002 1.02393 0.97956 0.99189 0.90824 0.89313 0.89621 0.80205 0.89702 0.90295 0.90363 0.90783 0.91136 0.89787 0.75652 0.85559 0.87559 0.92301 0.89978 0.88662 0.88917 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.32 59.84 0.68 1.32 16 2 N -0.37 -4.10 4.00 -63.88 -0.26 -4.35 16 3 N -0.30 -4.18 12.59 30.54 0.38 -3.80 16 4 C 0.07 0.91 11.84 -17.48 -0.21 0.71 16 5 C -0.25 -3.17 5.60 -105.05 -0.59 -3.76 16 6 C 0.09 1.02 6.73 -82.33 -0.55 0.47 16 7 C -0.06 -0.41 5.90 -27.63 -0.16 -0.57 16 8 C -0.11 -0.94 5.90 -26.49 -0.16 -1.10 16 9 C -0.13 -1.41 5.52 -26.49 -0.15 -1.56 16 10 C 0.23 3.07 2.97 -68.82 -0.20 2.87 16 11 H 0.10 1.37 7.72 -51.93 -0.40 0.97 16 12 N -1.12 -15.91 5.16 -5.65 -0.03 -15.93 16 13 S 2.61 50.45 5.04 -107.50 -0.54 49.91 16 14 O -0.97 -20.54 18.08 -57.54 -1.04 -21.58 16 15 O -0.94 -21.84 17.51 -57.54 -1.01 -22.84 16 16 C -0.58 -11.16 5.58 37.16 0.21 -10.95 16 17 C 0.00 0.04 0.81 -155.66 -0.13 -0.08 16 18 C -0.51 -14.15 8.85 -34.44 -0.30 -14.45 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 20 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 21 N -0.88 -26.67 13.96 55.43 0.77 -25.90 16 22 Si 0.87 21.11 24.84 -169.99 -4.22 16.88 16 23 H -0.27 -6.47 7.07 56.52 0.40 -6.07 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.26 -5.73 5.84 56.52 0.33 -5.40 16 26 C -0.18 -3.65 9.96 -26.69 -0.27 -3.91 16 27 C -0.19 -3.88 7.62 -26.69 -0.20 -4.08 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.34 7.57 -51.93 -0.39 -0.06 16 31 H 0.18 2.22 7.43 -52.48 -0.39 1.83 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.43 7.76 -51.93 -0.40 0.03 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 36 H 0.07 0.69 8.11 -51.93 -0.42 0.26 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.41 4.97 8.92 -34.47 -0.31 4.66 16 39 H 0.13 2.42 6.55 -51.92 -0.34 2.08 16 40 H 0.11 1.64 7.46 -51.93 -0.39 1.25 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 44 H 0.09 2.02 7.20 -51.93 -0.37 1.64 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -36.77 373.59 -9.29 -46.06 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.85 Total: 8.59 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -2.13 Total: -32.67 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.87 Total: -49.99 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -2.05 Total: -44.43 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.22 Total: 16.88 kcal Atomic # 16 Polarization: 50.45 SS G_CDS: -0.54 Total: 49.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.77 -9.29 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589127671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.676 kcal (2) G-P(sol) polarization free energy of solvation -36.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds