Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.47062 * 2 1 4 4 C 1.34792 * 116.99686 * 180.02562 * 3 2 1 5 5 O 1.21555 * 120.00505 * 0.02562 * 4 3 2 6 6 C 1.47113 * 119.99982 * 180.02562 * 4 3 2 7 7 C 1.35291 * 123.15837 * 179.97438 * 6 4 3 8 8 S 1.70937 * 108.82299 * 180.02562 * 7 6 4 9 9 C 1.70765 * 91.13653 * 0.02562 * 8 7 6 10 10 C 1.50699 * 124.70834 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.47140 * 270.02117 * 10 9 8 12 12 C 1.46951 * 111.00081 * 293.80060 * 11 10 9 13 13 C 1.53045 * 109.36542 * 176.80928 * 12 11 10 14 14 N 1.46956 * 109.36490 * 58.40251 * 13 12 11 15 15 C 1.46896 * 111.00231 * 176.81047 * 14 13 12 16 16 C 1.50702 * 109.47333 * 293.79945 * 15 14 13 17 17 H 1.07997 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00182 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99931 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00087 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46893 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46940 * 119.99596 * 20 18 16 23 23 H 1.48497 * 109.47270 * 239.99877 * 20 18 16 24 24 C 1.46954 * 110.88190 * 300.68146 * 14 13 12 25 25 C 1.46953 * 110.99875 * 170.00105 * 11 10 9 26 26 N 1.28618 * 110.58393 * 0.26133 * 9 8 7 27 27 H 1.08996 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46963 * 299.99914 * 1 2 3 29 29 H 1.09003 * 109.47039 * 59.99337 * 1 2 3 30 30 H 1.08999 * 109.46780 * 240.00589 * 2 1 3 31 31 H 1.08996 * 109.47447 * 120.00145 * 2 1 3 32 32 H 1.08006 * 125.58584 * 0.03722 * 7 6 4 33 33 H 1.09004 * 109.47103 * 150.02217 * 10 9 8 34 34 H 1.09000 * 109.47247 * 30.02095 * 10 9 8 35 35 H 1.09005 * 109.48678 * 296.77705 * 12 11 10 36 36 H 1.09004 * 109.48825 * 56.84230 * 12 11 10 37 37 H 1.08998 * 109.49025 * 298.43470 * 13 12 11 38 38 H 1.09007 * 109.49248 * 178.36674 * 13 12 11 39 39 H 1.08998 * 109.47493 * 53.80015 * 15 14 13 40 40 H 1.09007 * 109.47227 * 173.79659 * 15 14 13 41 41 H 0.96994 * 119.99782 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.48381 * 299.35289 * 24 14 13 43 43 H 1.08996 * 109.49567 * 179.29237 * 24 14 13 44 44 H 1.09003 * 109.48921 * 303.15321 * 25 11 10 45 45 H 1.09004 * 109.49415 * 63.22045 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5456 -0.0005 5 8 4.0909 0.5816 -0.0015 6 6 3.9127 2.9050 0.0000 7 6 5.2422 3.1558 0.0000 8 16 5.4841 4.8480 0.0014 9 6 3.7988 5.1232 0.0027 10 6 3.1516 6.4841 0.0038 11 7 2.9427 6.9259 1.3892 12 6 1.9586 6.0738 2.0709 13 6 1.8288 6.5161 3.5303 14 7 1.4215 7.9273 3.5774 15 6 1.2126 8.3691 4.9627 16 6 0.0324 7.6390 5.5503 17 1 -0.5086 6.9191 4.9540 18 6 -0.3573 7.8907 6.8487 19 7 0.3013 8.7677 7.5745 20 14 -1.8206 6.9863 7.5767 21 1 -2.3842 6.0595 6.5625 22 1 -1.3821 6.2113 8.7651 23 1 -2.8582 7.9685 7.9814 24 6 2.4056 8.7795 2.8956 25 6 2.5354 8.3371 1.4361 26 7 3.1585 4.0078 0.0075 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 6.0226 2.4092 -0.0009 33 1 2.1913 6.4302 -0.5091 34 1 3.7988 7.1947 -0.5105 35 1 0.9921 6.1665 1.5755 36 1 2.2886 5.0356 2.0336 37 1 2.7887 6.3977 4.0329 38 1 1.0781 5.9041 4.0305 39 1 2.1038 8.1522 5.5516 40 1 1.0200 9.4419 4.9769 41 1 0.0269 8.9451 8.4878 42 1 3.3721 8.6868 3.3910 43 1 2.0756 9.8177 2.9330 44 1 3.2861 8.9491 0.9361 45 1 1.5755 8.4556 0.9335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590115443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -24.804475 kcal Electronic energy + Delta-G solvation = -26920.802470 eV Core-core repulsion = 23065.569952 eV Total energy + Delta-G solvation = -3855.232517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98370 -39.69408 -38.59091 -36.82378 -35.29269 -32.65836 -31.99663 -31.33328 -30.39586 -28.78428 -26.91345 -26.07388 -24.25740 -23.22564 -22.95457 -21.68308 -21.26460 -20.17252 -19.31822 -19.04985 -17.12893 -16.86715 -16.67150 -16.31876 -16.12575 -15.35563 -14.99880 -14.80861 -14.51809 -14.24453 -14.02767 -13.88309 -13.75083 -13.48266 -13.15627 -13.06317 -12.86354 -12.24301 -12.18736 -12.12873 -11.99762 -11.83558 -11.71324 -11.19505 -10.97706 -10.86505 -10.76802 -10.74241 -10.64590 -10.43250 -10.31023 -10.04046 -9.92949 -9.72568 -9.26598 -9.15254 -8.43562 -8.28418 -7.22673 -6.01851 -4.02958 0.14474 0.91914 1.29230 1.48059 2.47934 2.86322 3.31877 3.39249 3.44448 3.62491 4.10968 4.43650 4.46717 4.67768 4.70542 4.75524 4.86386 4.95334 4.98374 5.00662 5.23866 5.33950 5.35824 5.42332 5.53828 5.54160 5.60595 5.72537 5.75771 5.81230 5.94463 6.09483 6.12617 6.18716 6.40599 6.58252 6.71203 7.04569 7.06748 7.14967 7.33658 7.37386 7.55712 7.81557 8.09630 8.21039 8.56176 9.05061 9.61409 11.09110 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003031 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.346437 B = 9235.964021 C =11349.745248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.333 6.333 4 C 0.550 3.450 5 O -0.506 6.506 6 C 0.023 3.977 7 C -0.230 4.230 8 S 0.255 5.745 9 C 0.041 3.959 10 C 0.127 3.873 11 N -0.536 5.536 12 C 0.059 3.941 13 C 0.069 3.931 14 N -0.539 5.539 15 C 0.194 3.806 16 C -0.506 4.506 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.057 3.943 25 C 0.063 3.937 26 N -0.422 5.422 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.191 0.809 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.086 0.914 39 H -0.009 1.009 40 H 0.030 0.970 41 H 0.260 0.740 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 -10.456 -19.866 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.248 6.248 4 C 0.392 3.608 5 O -0.394 6.394 6 C -0.112 4.112 7 C -0.372 4.372 8 S 0.514 5.486 9 C -0.240 4.240 10 C -0.004 4.004 11 N -0.262 5.262 12 C -0.069 4.069 13 C -0.060 4.060 14 N -0.264 5.264 15 C 0.069 3.931 16 C -0.545 4.545 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.072 4.072 25 C -0.065 4.065 26 N -0.137 5.137 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.208 0.792 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.105 0.895 39 H 0.009 0.991 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.000 -10.024 -19.675 24.240 hybrid contribution -1.089 -1.608 0.642 2.046 sum 8.911 -11.632 -19.034 24.021 Atomic orbital electron populations 1.21809 0.92227 1.02957 1.04025 1.23118 0.95766 0.79786 1.02583 1.86710 1.22683 1.32206 1.83243 1.19814 0.81077 0.87434 0.72450 1.90872 1.60775 1.41196 1.46591 1.19213 0.89065 0.91581 1.11295 1.26705 1.00454 1.03319 1.06769 1.82961 1.08157 0.95558 1.61938 1.27074 0.94794 0.98430 1.03672 1.20621 0.99989 0.87632 0.92132 1.62217 1.47841 1.03856 1.12308 1.22300 0.93055 0.96219 0.95338 1.21984 0.99186 0.91376 0.93425 1.62289 1.42437 1.01228 1.20440 1.19699 0.95894 0.96412 0.81115 1.21201 1.13237 1.23127 0.96920 0.91859 1.24987 0.97082 0.95467 0.97080 1.69968 1.40472 1.34103 1.09307 0.86461 0.82485 0.79618 0.78995 1.19644 1.21131 1.21009 1.22059 0.94856 0.97681 0.92639 1.22188 0.98992 0.87151 0.98175 1.67020 1.36717 0.96624 1.13310 0.90147 0.91051 0.91352 0.91185 0.91018 0.79191 0.91255 0.88486 0.93808 0.90821 0.95499 0.89534 0.99088 0.95201 0.93004 0.95078 0.90786 0.90860 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.80 16 2 C 0.06 0.60 6.20 37.16 0.23 0.83 16 3 O -0.33 -4.38 10.16 -40.74 -0.41 -4.79 16 4 C 0.55 7.50 7.94 34.33 0.27 7.77 16 5 O -0.51 -7.34 16.51 -19.31 -0.32 -7.66 16 6 C 0.02 0.30 6.71 -84.55 -0.57 -0.27 16 7 C -0.23 -2.33 10.62 29.68 0.32 -2.02 16 8 S 0.26 2.22 22.92 -107.50 -2.46 -0.24 16 9 C 0.04 0.47 6.02 -13.62 -0.08 0.39 16 10 C 0.13 1.38 5.54 -4.97 -0.03 1.35 16 11 N -0.54 -7.46 4.70 -235.90 -1.11 -8.57 16 12 C 0.06 0.97 5.43 -3.77 -0.02 0.95 16 13 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 14 N -0.54 -11.63 4.70 -235.91 -1.11 -12.74 16 15 C 0.19 5.06 4.72 -4.98 -0.02 5.04 16 16 C -0.51 -14.27 8.47 -34.44 -0.29 -14.57 16 17 H 0.06 1.78 7.13 -52.49 -0.37 1.40 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 20 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 C 0.06 1.00 5.61 -3.77 -0.02 0.97 16 25 C 0.06 0.86 5.61 -3.77 -0.02 0.84 16 26 N -0.42 -5.69 9.70 -8.53 -0.08 -5.77 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.19 1.56 8.03 -52.48 -0.42 1.14 16 33 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.23 6.53 -51.93 -0.34 0.89 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.89 6.79 -51.93 -0.35 1.54 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 44 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -32.86 385.35 -10.89 -43.75 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.94 Total: -3.79 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 0.03 Total: 3.32 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -1.56 Total: -53.14 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.73 Total: -12.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.46 Total: -0.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.86 -10.89 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590115443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.945 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds