Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00401 * 2 1 4 4 C 1.39005 * 119.99655 * 180.02562 * 2 1 3 5 5 C 1.39138 * 119.70705 * 4.99285 * 4 2 1 6 6 C 1.38298 * 119.09632 * 180.02562 * 5 4 2 7 7 C 1.38884 * 118.50507 * 0.02562 * 6 5 4 8 8 S 1.76201 * 120.33333 * 180.02562 * 7 6 5 9 9 O 1.42098 * 106.40281 * 203.54012 * 8 7 6 10 10 O 1.42100 * 106.40426 * 336.46183 * 8 7 6 11 11 N 1.65600 * 107.21464 * 90.00142 * 8 7 6 12 12 C 1.46929 * 120.63098 * 269.71506 * 11 8 7 13 13 C 1.53627 * 108.54181 * 126.37009 * 12 11 8 14 14 C 1.53045 * 109.24108 * 54.85905 * 13 12 11 15 15 C 1.53042 * 109.53744 * 298.51016 * 14 13 12 16 16 H 1.09000 * 109.52403 * 301.39749 * 15 14 13 17 17 C 1.50697 * 109.49697 * 181.31729 * 15 14 13 18 18 H 1.08002 * 119.99870 * 245.60830 * 17 15 14 19 19 C 1.37878 * 120.00434 * 65.60802 * 17 15 14 20 20 N 1.31510 * 119.99282 * 9.56562 * 19 17 15 21 21 Si 1.86793 * 120.00321 * 189.57026 * 19 17 15 22 22 H 1.48504 * 109.47201 * 94.99046 * 21 19 17 23 23 H 1.48504 * 109.47259 * 214.98928 * 21 19 17 24 24 H 1.48499 * 109.47166 * 334.99209 * 21 19 17 25 25 C 1.46932 * 120.63418 * 90.00181 * 11 8 7 26 26 C 1.38025 * 119.33036 * 359.97438 * 7 6 5 27 27 N 1.31974 * 120.85567 * 359.72713 * 26 7 6 28 28 H 1.09004 * 109.47568 * 89.99497 * 1 2 3 29 29 H 1.09008 * 109.47185 * 329.99620 * 1 2 3 30 30 H 1.09000 * 109.47219 * 209.99816 * 1 2 3 31 31 H 1.09004 * 109.46783 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46710 * 120.00010 * 3 2 1 33 33 H 1.09004 * 109.47219 * 240.00429 * 3 2 1 34 34 H 1.07997 * 120.45261 * 359.97438 * 5 4 2 35 35 H 1.07999 * 120.74438 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.59110 * 246.20320 * 12 11 8 37 37 H 1.08996 * 109.58439 * 6.63198 * 12 11 8 38 38 H 1.09005 * 109.63314 * 294.86985 * 13 12 11 39 39 H 1.08995 * 109.43529 * 174.72545 * 13 12 11 40 40 H 1.09003 * 109.45840 * 178.48982 * 14 13 12 41 41 H 1.09005 * 109.44916 * 58.52314 * 14 13 12 42 42 H 0.97007 * 119.99667 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.57903 * 353.36860 * 25 11 8 44 44 H 1.08997 * 109.58811 * 113.79137 * 25 11 8 45 45 H 1.07997 * 119.56998 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2039 -0.0005 5 6 1.4620 -2.4029 -0.1063 6 6 2.1660 -3.5932 -0.1050 7 6 3.5498 -3.5447 0.0030 8 16 4.4946 -5.0320 0.0089 9 8 5.7189 -4.7270 0.6626 10 8 3.6178 -6.0627 0.4424 11 7 4.8779 -5.3754 -1.5652 12 6 3.9914 -6.2114 -2.3862 13 6 3.6584 -5.4487 -3.6775 14 6 4.9596 -5.0417 -4.3727 15 6 5.7599 -4.1121 -3.4574 16 1 5.1621 -3.2324 -3.2191 17 6 7.0256 -3.6861 -4.1557 18 1 7.9856 -3.9961 -3.7700 19 6 6.9581 -2.9007 -5.2868 20 7 5.8119 -2.3677 -5.6497 21 14 8.4945 -2.5936 -6.3038 22 1 8.5546 -3.5735 -7.4181 23 1 8.4547 -1.2162 -6.8575 24 1 9.6958 -2.7471 -5.4444 25 6 6.1140 -4.8551 -2.1654 26 6 4.1775 -2.3196 0.1045 27 7 3.4805 -1.1991 0.0947 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5138 31 1 1.4892 2.0972 0.0005 32 1 2.8242 1.3263 0.8900 33 1 2.8242 1.3264 -0.8900 34 1 0.3851 -2.4040 -0.1874 35 1 1.6513 -4.5392 -0.1852 36 1 4.4944 -7.1470 -2.6306 37 1 3.0737 -6.4202 -1.8365 38 1 3.0799 -4.5566 -3.4371 39 1 3.0782 -6.0917 -4.3392 40 1 4.7275 -4.5235 -5.3032 41 1 5.5489 -5.9325 -4.5904 42 1 5.7643 -1.8154 -6.4458 43 1 6.5970 -4.1688 -1.4699 44 1 6.7865 -5.6824 -2.3921 45 1 5.2534 -2.2774 0.1890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594805527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = -28.018731 kcal Electronic energy + Delta-G solvation = -28540.818534 eV Core-core repulsion = 24685.446637 eV Total energy + Delta-G solvation = -3855.371898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27691 -37.70128 -36.94501 -36.72125 -35.50435 -33.26229 -32.56106 -31.14758 -30.66819 -30.10851 -28.45807 -25.65599 -25.09037 -23.64843 -23.39589 -21.87551 -21.65938 -19.56814 -18.45378 -17.92931 -17.35484 -16.86738 -16.69801 -16.15583 -15.51765 -15.31450 -14.85080 -14.62559 -14.44015 -13.88522 -13.63830 -13.53732 -13.35366 -13.20986 -12.95446 -12.81382 -12.75666 -12.67243 -12.51847 -12.15122 -12.13910 -11.78353 -11.69524 -11.30175 -11.00575 -10.97487 -10.84510 -10.74528 -10.43625 -10.28318 -10.03426 -9.78113 -9.77212 -9.49181 -9.36546 -8.87454 -8.39136 -8.18699 -7.89229 -6.05333 -4.07419 0.72705 1.04685 1.34765 2.68312 3.29534 3.31361 3.37454 3.41218 3.77547 4.14223 4.41941 4.42386 4.55663 4.66807 4.86861 5.03802 5.04633 5.17475 5.21486 5.23419 5.29554 5.35261 5.49020 5.64907 5.68226 5.72193 5.77847 5.80756 5.92703 5.99291 6.23613 6.31302 6.41183 6.46852 6.60588 6.63541 6.66844 6.84398 7.01453 7.11924 7.16850 7.36838 7.68560 7.89438 7.97688 8.01396 8.37762 8.96669 9.56469 11.03501 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009693 B = 0.004650 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.026092 B = 6020.613234 C = 7667.039089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.612 5.612 3 C 0.101 3.899 4 C 0.440 3.560 5 C -0.259 4.259 6 C 0.061 3.939 7 C -0.785 4.785 8 S 2.701 3.299 9 O -0.962 6.962 10 O -0.972 6.972 11 N -0.992 5.992 12 C 0.126 3.874 13 C -0.134 4.134 14 C -0.102 4.102 15 C 0.038 3.962 16 H 0.036 0.964 17 C -0.518 4.518 18 H 0.059 0.941 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.887 3.113 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.273 1.273 25 C 0.126 3.874 26 C 0.261 3.739 27 N -0.548 5.548 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.259 0.741 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.226 1.466 9.882 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.324 5.324 3 C -0.042 4.042 4 C 0.204 3.796 5 C -0.284 4.284 6 C 0.035 3.965 7 C -0.876 4.876 8 S 2.791 3.209 9 O -0.952 6.952 10 O -0.962 6.962 11 N -0.831 5.831 12 C 0.001 3.999 13 C -0.174 4.174 14 C -0.140 4.140 15 C 0.018 3.982 16 H 0.054 0.946 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.197 1.197 25 C 0.002 3.998 26 C 0.100 3.900 27 N -0.265 5.265 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.799 2.125 10.549 15.969 hybrid contribution -0.102 0.223 -1.240 1.264 sum -11.901 2.348 9.309 15.291 Atomic orbital electron populations 1.21799 0.78179 1.03144 1.01968 1.46414 1.05407 1.03443 1.77112 1.21608 0.96533 0.83271 1.02796 1.18582 0.88785 0.85768 0.86424 1.21402 1.01008 0.91849 1.14189 1.20937 0.91569 0.98570 0.85465 1.31669 1.08172 1.21302 1.26480 1.01584 0.73183 0.73370 0.72767 1.93549 1.43414 1.85453 1.72829 1.93514 1.67688 1.54721 1.80280 1.57662 1.31883 1.63147 1.30402 1.21478 0.92654 0.93244 0.92517 1.22071 1.00075 0.99342 0.95862 1.21496 0.93127 0.98746 1.00666 1.18989 0.96015 0.93610 0.89612 0.94562 1.21087 0.92364 1.31603 1.10632 0.92298 1.24918 0.95862 0.95008 0.97723 1.69980 1.24911 1.32423 1.25096 0.86655 0.83796 0.77341 0.80678 1.20752 1.21426 1.19736 1.21844 0.82678 0.97946 0.97296 1.22217 0.99731 0.85156 0.82918 1.67305 1.05906 1.31452 1.21865 0.92498 0.90785 0.90919 0.91156 0.92038 0.91858 0.84484 0.83669 0.91370 0.90622 0.92454 0.92638 0.90834 0.94222 0.93087 0.90438 0.91845 0.81122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.02 59.85 0.60 1.29 16 2 N -0.61 -7.10 3.39 -189.66 -0.64 -7.75 16 3 C 0.10 1.03 10.19 59.85 0.61 1.64 16 4 C 0.44 6.45 7.37 -155.02 -1.14 5.31 16 5 C -0.26 -3.41 9.19 -39.23 -0.36 -3.77 16 6 C 0.06 0.86 9.64 -39.32 -0.38 0.49 16 7 C -0.78 -12.67 5.99 -39.42 -0.24 -12.90 16 8 S 2.70 45.97 5.70 -107.50 -0.61 45.36 16 9 O -0.96 -18.33 16.01 -57.17 -0.92 -19.25 16 10 O -0.97 -17.18 16.06 -57.17 -0.92 -18.10 16 11 N -0.99 -17.43 3.28 -113.27 -0.37 -17.80 16 12 C 0.13 2.01 6.41 -3.48 -0.02 1.98 16 13 C -0.13 -2.35 6.10 -26.38 -0.16 -2.51 16 14 C -0.10 -2.21 5.02 -26.69 -0.13 -2.34 16 15 C 0.04 0.88 2.11 -91.65 -0.19 0.69 16 16 H 0.04 0.95 8.09 -51.93 -0.42 0.53 16 17 C -0.52 -13.56 8.48 -34.44 -0.29 -13.85 16 18 H 0.06 1.52 7.77 -52.49 -0.41 1.11 16 19 C 0.07 1.80 5.19 -17.82 -0.09 1.70 16 20 N -0.89 -24.75 12.17 55.43 0.67 -24.07 16 21 Si 0.89 20.79 29.55 -169.99 -5.02 15.77 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C 0.13 2.52 5.60 -3.71 -0.02 2.50 16 26 C 0.26 4.41 10.68 -17.57 -0.19 4.22 16 27 N -0.55 -9.17 9.57 -12.44 -0.12 -9.29 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 7.92 -51.92 -0.41 -0.02 16 30 H 0.07 0.48 6.39 -51.93 -0.33 0.15 16 31 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.14 1.35 6.27 -52.49 -0.33 1.02 16 35 H 0.15 1.73 7.70 -52.49 -0.40 1.32 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.05 7.12 -51.93 -0.37 0.68 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.81 6.89 -51.93 -0.36 1.45 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.08 1.54 7.13 -51.93 -0.37 1.17 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.17 2.73 7.62 -52.49 -0.40 2.33 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -32.63 373.17 -11.04 -43.67 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.72 Total: 1.39 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.01 Total: -15.56 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.46 Total: -58.91 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -1.83 Total: -37.35 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 45.97 SS G_CDS: -0.61 Total: 45.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.63 -11.04 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594805527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.650 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds