Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38999 * 119.99826 * 179.72035 * 2 1 3 5 5 C 1.39135 * 119.71136 * 5.00490 * 4 2 1 6 6 C 1.38295 * 119.09861 * 179.97438 * 5 4 2 7 7 C 1.38879 * 118.50891 * 0.02562 * 6 5 4 8 8 S 1.76194 * 120.33631 * 179.97438 * 7 6 5 9 9 O 1.42104 * 106.40312 * 203.54132 * 8 7 6 10 10 O 1.42102 * 106.40498 * 336.46064 * 8 7 6 11 11 N 1.65602 * 107.21702 * 90.00100 * 8 7 6 12 12 C 1.46925 * 120.62924 * 269.71513 * 11 8 7 13 13 C 1.52759 * 109.00940 * 233.58583 * 12 11 8 14 14 C 1.53043 * 109.38452 * 305.58666 * 13 12 11 15 15 C 1.53043 * 109.53353 * 61.24162 * 14 13 12 16 16 H 1.08998 * 109.49651 * 58.58793 * 15 14 13 17 17 C 1.50698 * 109.49748 * 178.68169 * 15 14 13 18 18 H 1.07994 * 120.00109 * 119.83383 * 17 15 14 19 19 C 1.37877 * 120.00074 * 299.84091 * 17 15 14 20 20 N 1.31512 * 119.99822 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00088 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47185 * 60.00076 * 21 19 17 23 23 H 1.48507 * 109.47192 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47162 * 300.00106 * 21 19 17 25 25 C 1.46922 * 120.63047 * 90.00056 * 11 8 7 26 26 C 1.38027 * 119.32832 * 0.02562 * 7 6 5 27 27 N 1.31972 * 120.85562 * 359.71638 * 26 7 6 28 28 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 29 29 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 30 30 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 31 31 H 1.09003 * 109.47269 * 89.99349 * 3 2 1 32 32 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 33 33 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 34 34 H 1.08007 * 120.44492 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.74248 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.58527 * 353.42479 * 12 11 8 37 37 H 1.09004 * 109.58407 * 113.84707 * 12 11 8 38 38 H 1.09004 * 109.55991 * 185.55580 * 13 12 11 39 39 H 1.08997 * 109.36103 * 65.50527 * 13 12 11 40 40 H 1.09003 * 109.46297 * 301.22459 * 14 13 12 41 41 H 1.09001 * 109.46090 * 181.26038 * 14 13 12 42 42 H 0.97010 * 120.00113 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.58807 * 246.15475 * 25 11 8 44 44 H 1.08995 * 109.58912 * 6.58130 * 25 11 8 45 45 H 1.07994 * 119.57341 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1600 -1.2038 0.0059 5 6 1.4622 -2.4034 -0.0937 6 6 2.1664 -3.5936 -0.0871 7 6 3.5502 -3.5445 0.0197 8 16 4.4951 -5.0316 0.0335 9 8 5.7197 -4.7229 0.6849 10 8 3.6185 -6.0599 0.4734 11 7 4.8775 -5.3840 -1.5387 12 6 3.9906 -6.2246 -2.3544 13 6 4.8010 -7.3782 -2.9429 14 6 6.0073 -6.8174 -3.6996 15 6 6.9025 -6.0403 -2.7316 16 1 7.2277 -6.7003 -1.9275 17 6 8.1065 -5.5160 -3.4708 18 1 8.2912 -4.4529 -3.5167 19 6 8.9721 -6.3934 -4.0888 20 7 8.7473 -7.6879 -4.0326 21 14 10.4641 -5.7434 -5.0057 22 1 11.3306 -4.9858 -4.0672 23 1 11.2292 -6.8813 -5.5759 24 1 10.0191 -4.8463 -6.1023 25 6 6.1131 -4.8670 -2.1425 26 6 4.1778 -2.3189 0.1161 27 7 3.4806 -1.1985 0.1022 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.3791 1.5835 1.0277 32 1 3.1499 1.1384 -0.5138 33 1 1.6084 2.0284 -0.5138 34 1 0.3853 -2.4049 -0.1758 35 1 1.6517 -4.5400 -0.1626 36 1 3.1898 -6.6229 -1.7314 37 1 3.5658 -5.6302 -3.1634 38 1 4.1759 -7.9510 -3.6280 39 1 5.1460 -8.0256 -2.1367 40 1 5.6623 -6.1507 -4.4899 41 1 6.5740 -7.6384 -4.1389 42 1 9.3566 -8.3053 -4.4671 43 1 5.8651 -4.1596 -2.9337 44 1 6.7124 -4.3699 -1.3797 45 1 5.2537 -2.2761 0.1989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594805528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -24.948691 kcal Electronic energy + Delta-G solvation = -27935.500797 eV Core-core repulsion = 24080.262026 eV Total energy + Delta-G solvation = -3855.238771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49074 -37.67802 -36.95718 -36.89753 -35.47842 -33.27430 -32.76446 -31.10084 -30.82616 -30.06381 -28.65566 -25.82692 -25.08597 -23.66013 -23.51463 -22.03343 -21.62635 -19.49836 -18.73143 -17.86447 -17.28114 -17.03213 -16.86442 -16.09494 -15.72242 -15.32855 -15.02298 -14.70008 -14.52848 -13.87145 -13.79203 -13.66908 -13.40674 -13.23431 -13.06290 -12.97737 -12.76720 -12.63702 -12.62300 -12.34368 -12.11484 -11.74579 -11.67069 -11.31337 -11.00612 -10.92587 -10.81014 -10.71104 -10.61101 -10.18685 -9.98930 -9.90463 -9.77972 -9.64290 -9.33147 -8.81111 -8.41876 -8.17941 -8.05643 -5.97545 -4.04829 0.61984 0.89423 1.13272 2.48373 3.27325 3.33998 3.38695 3.41473 3.62941 4.11137 4.22312 4.43552 4.47993 4.51546 4.70083 4.85921 4.88496 5.00296 5.06479 5.19479 5.26085 5.28448 5.33562 5.50501 5.51840 5.61248 5.72189 5.75148 5.83587 6.07012 6.22619 6.27662 6.37541 6.46675 6.51290 6.66269 6.68000 6.91502 6.92932 7.06227 7.26385 7.48067 7.74333 7.78110 7.99912 8.12996 8.42760 8.98363 9.59673 11.07940 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.003176 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.666885 B = 8813.516181 C = 9656.064778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.612 5.612 3 C 0.096 3.904 4 C 0.436 3.564 5 C -0.260 4.260 6 C 0.061 3.939 7 C -0.787 4.787 8 S 2.697 3.303 9 O -0.956 6.956 10 O -0.968 6.968 11 N -0.990 5.990 12 C 0.124 3.876 13 C -0.132 4.132 14 C -0.110 4.110 15 C 0.042 3.958 16 H 0.033 0.967 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.123 3.877 26 C 0.254 3.746 27 N -0.552 5.552 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.094 0.906 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.445 12.768 6.076 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.324 5.324 3 C -0.047 4.047 4 C 0.201 3.799 5 C -0.285 4.285 6 C 0.035 3.965 7 C -0.877 4.877 8 S 2.786 3.214 9 O -0.946 6.946 10 O -0.958 6.958 11 N -0.830 5.830 12 C -0.002 4.002 13 C -0.171 4.171 14 C -0.148 4.148 15 C 0.022 3.978 16 H 0.051 0.949 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C 0.000 4.000 26 C 0.093 3.907 27 N -0.270 5.270 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.889 13.175 6.814 23.238 hybrid contribution -0.056 0.233 -0.949 0.979 sum -17.944 13.408 5.865 23.155 Atomic orbital electron populations 1.21788 0.78091 1.03338 1.01960 1.46432 1.05483 1.03372 1.77068 1.21643 0.97715 0.83595 1.01717 1.18607 0.88794 0.85868 0.86596 1.21442 1.01114 0.91794 1.14133 1.21010 0.91602 0.98702 0.85230 1.31885 1.08311 1.21629 1.25876 1.01790 0.73249 0.73334 0.72982 1.93568 1.43017 1.85271 1.72740 1.93517 1.67768 1.54538 1.79975 1.57617 1.31721 1.62582 1.31060 1.21338 0.91917 0.92352 0.94544 1.21879 0.98639 0.96504 1.00047 1.21593 0.93847 1.01532 0.97845 1.18937 0.92256 0.91785 0.94795 0.94915 1.21055 1.07786 0.93181 1.33405 0.92471 1.24936 0.97745 0.94844 0.96286 1.69870 1.37272 1.01370 1.44153 0.86656 0.82917 0.78313 0.80063 1.20207 1.21384 1.20348 1.21871 0.82251 0.98641 0.97275 1.22272 0.99849 0.85187 0.83375 1.67309 1.05968 1.31524 1.22168 0.92467 0.90809 0.90702 0.93023 0.90051 0.91577 0.84357 0.83433 0.90379 0.92281 0.92518 0.92213 0.94651 0.88744 0.92922 0.92556 0.90181 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.06 59.85 0.60 1.10 16 2 N -0.61 -5.66 3.39 -189.66 -0.64 -6.30 16 3 C 0.10 0.75 10.42 59.85 0.62 1.37 16 4 C 0.44 5.32 7.37 -155.02 -1.14 4.18 16 5 C -0.26 -2.86 9.19 -39.23 -0.36 -3.22 16 6 C 0.06 0.75 9.64 -39.32 -0.38 0.38 16 7 C -0.79 -11.33 5.99 -39.42 -0.24 -11.57 16 8 S 2.70 45.79 5.74 -107.50 -0.62 45.18 16 9 O -0.96 -18.77 15.89 -57.17 -0.91 -19.68 16 10 O -0.97 -17.58 15.94 -57.17 -0.91 -18.49 16 11 N -0.99 -17.53 3.30 -113.77 -0.37 -17.91 16 12 C 0.12 2.00 6.45 -3.93 -0.03 1.98 16 13 C -0.13 -2.43 6.06 -26.83 -0.16 -2.60 16 14 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 15 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 16 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.52 -13.72 8.56 -34.44 -0.29 -14.02 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 21 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.12 2.49 5.70 -3.71 -0.02 2.47 16 26 C 0.25 3.66 10.67 -17.57 -0.19 3.48 16 27 N -0.55 -7.72 9.16 -12.44 -0.11 -7.83 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.36 6.37 -51.93 -0.33 0.03 16 30 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.76 7.45 -51.93 -0.39 0.37 16 33 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 34 H 0.14 1.08 6.26 -52.48 -0.33 0.75 16 35 H 0.15 1.55 7.70 -52.49 -0.40 1.14 16 36 H 0.08 1.12 6.91 -51.93 -0.36 0.76 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 2.41 6.05 -51.93 -0.31 2.09 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 45 H 0.17 2.31 7.62 -52.49 -0.40 1.91 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -33.02 370.84 -11.03 -44.06 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.64 Total: 0.35 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.02 Total: -16.62 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.50 Total: -56.33 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.82 Total: -38.17 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 45.79 SS G_CDS: -0.62 Total: 45.18 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.02 -11.03 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594805528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.107 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds