Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40086 * 126.04116 * 2 1 4 4 C 1.30833 * 108.20561 * 180.26177 * 3 2 1 5 5 C 1.39868 * 108.20415 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.03838 * 179.97438 * 5 4 3 7 7 C 1.53000 * 117.50043 * 8.62515 * 6 5 4 8 8 C 1.52999 * 60.00179 * 252.50885 * 7 6 5 9 9 C 1.34942 * 126.03480 * 180.30302 * 2 1 3 10 10 C 1.50700 * 126.13009 * 359.76084 * 9 2 1 11 11 N 1.46501 * 109.47201 * 89.97126 * 10 9 2 12 12 S 1.65600 * 120.00343 * 165.00283 * 11 10 9 13 13 O 1.42105 * 104.27831 * 181.07163 * 12 11 10 14 14 O 1.42096 * 104.27485 * 308.93138 * 12 11 10 15 15 C 1.81398 * 104.44965 * 65.00230 * 12 11 10 16 16 C 1.52999 * 109.47312 * 173.81370 * 15 12 11 17 17 C 1.50700 * 115.54672 * 65.19033 * 16 15 12 18 18 H 1.08000 * 120.00481 * 264.77973 * 17 16 15 19 19 C 1.37878 * 119.99733 * 84.78862 * 17 16 15 20 20 N 1.31517 * 120.00312 * 352.23122 * 19 17 16 21 21 Si 1.86803 * 120.00066 * 172.22874 * 19 17 16 22 22 H 1.48502 * 109.46955 * 89.99682 * 21 19 17 23 23 H 1.48502 * 109.47212 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.47171 * 329.99880 * 21 19 17 25 25 C 1.52992 * 117.49603 * 279.52413 * 16 15 12 26 26 C 1.53001 * 117.49719 * 210.86132 * 16 15 12 27 27 H 1.08998 * 109.46944 * 269.69802 * 1 2 3 28 28 H 1.09002 * 109.46516 * 29.69016 * 1 2 3 29 29 H 1.08992 * 109.47019 * 149.69041 * 1 2 3 30 30 H 1.08004 * 125.89522 * 180.02562 * 4 3 2 31 31 H 1.09001 * 115.54893 * 154.32834 * 6 5 4 32 32 H 1.09007 * 117.50102 * 359.97438 * 7 6 5 33 33 H 1.09008 * 117.49896 * 145.01469 * 7 6 5 34 34 H 1.08999 * 117.49900 * 252.51125 * 8 7 6 35 35 H 1.08999 * 117.49744 * 107.48953 * 8 7 6 36 36 H 1.08995 * 109.47784 * 209.97201 * 10 9 2 37 37 H 1.09001 * 109.47050 * 329.97955 * 10 9 2 38 38 H 0.97009 * 119.99921 * 345.00727 * 11 10 9 39 39 H 1.09002 * 109.46647 * 293.81333 * 15 12 11 40 40 H 1.08998 * 109.46952 * 53.80937 * 15 12 11 41 41 H 0.96999 * 120.00251 * 185.03034 * 20 19 17 42 42 H 1.08997 * 117.50490 * 0.02562 * 25 16 15 43 43 H 1.09003 * 117.49849 * 145.02261 * 25 16 15 44 44 H 1.08999 * 117.49595 * 214.97432 * 26 16 15 45 45 H 1.08992 * 117.50184 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0057 5 6 3.5436 -0.6666 -0.0089 6 6 4.7679 -1.5454 -0.0161 7 6 6.1251 -0.8677 0.1832 8 6 5.7325 -1.4034 -1.1952 9 6 2.2588 -1.0912 -0.0058 10 6 1.7973 -2.5258 -0.0083 11 7 1.6424 -2.9865 -1.3903 12 16 1.5099 -4.6053 -1.7136 13 8 1.4029 -4.6724 -3.1290 14 8 2.6122 -5.1897 -1.0336 15 6 -0.0524 -5.0963 -0.9333 16 6 -0.3678 -6.5494 -1.2936 17 6 0.5960 -7.5760 -0.7568 18 1 1.4108 -7.9262 -1.3732 19 6 0.4374 -8.0685 0.5212 20 7 -0.4568 -7.5357 1.3251 21 14 1.4928 -9.4925 1.1111 22 1 2.7325 -8.9645 1.7352 23 1 0.7359 -10.2889 2.1102 24 1 1.8488 -10.3562 -0.0433 25 6 -0.9952 -6.8173 -2.6630 26 6 -1.8415 -6.9483 -1.3942 27 1 -0.3633 -0.0054 1.0276 28 1 -0.3632 0.8928 -0.5090 29 1 -0.3633 -0.8871 -0.5186 30 1 4.4054 1.3709 -0.0068 31 1 4.6348 -2.5405 0.4083 32 1 6.1326 0.2138 0.3191 33 1 6.8852 -1.4170 0.7389 34 1 6.2343 -2.3050 -1.5464 35 1 5.4817 -0.6743 -1.9657 36 1 2.5351 -3.1458 0.5008 37 1 0.8407 -2.6006 0.5089 38 1 1.6175 -2.3434 -2.1161 39 1 0.0366 -5.0014 0.1490 40 1 -0.8551 -4.4510 -1.2899 41 1 -0.5187 -7.8324 2.2465 42 1 -1.1828 -5.9586 -3.3075 43 1 -0.7112 -7.7365 -3.1755 44 1 -2.1138 -7.9535 -1.0725 45 1 -2.5862 -6.1757 -1.2032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594853494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = 55.721928 kcal Electronic energy + Delta-G solvation = -28059.717463 eV Core-core repulsion = 24207.976833 eV Total energy + Delta-G solvation = -3851.740630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54151 -37.08138 -36.81331 -36.34835 -35.47153 -35.07438 -33.04128 -32.08641 -30.42794 -28.24244 -26.93859 -25.73686 -25.49014 -22.99749 -22.33153 -21.26578 -20.48870 -19.84363 -19.47089 -18.74043 -17.30192 -16.77417 -16.32870 -15.95261 -15.72244 -15.30440 -15.14569 -14.75822 -14.46151 -14.28292 -14.20592 -13.81369 -13.52606 -13.14815 -12.94759 -12.84896 -12.63905 -12.01703 -11.94277 -11.85785 -11.52261 -11.44541 -11.33240 -11.21247 -11.06525 -10.96911 -10.87793 -10.63403 -10.62061 -10.50397 -10.33534 -10.17705 -9.80874 -9.47772 -9.36477 -9.00518 -8.60601 -8.27462 -8.15047 -6.18614 -4.29072 0.92300 1.67371 2.34538 2.55442 3.28297 3.34081 3.39231 3.44412 3.99121 4.28586 4.33896 4.33968 4.50401 4.76382 4.88165 4.94002 4.98591 5.02798 5.08717 5.09606 5.14638 5.15858 5.24403 5.30401 5.33082 5.56658 5.61372 5.64304 5.87749 5.88588 5.95541 6.05620 6.12475 6.19371 6.27287 6.30841 6.50028 6.54472 6.67443 6.82773 6.92622 7.09611 7.19330 7.34317 7.55274 7.76279 8.15444 8.76711 9.42518 10.89014 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003735 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.262062 B = 7495.183052 C = 8190.023690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.366 5.366 3 N -0.292 5.292 4 C 0.049 3.951 5 C -0.183 4.183 6 C -0.078 4.078 7 C -0.176 4.176 8 C -0.173 4.173 9 C 0.082 3.918 10 C 0.183 3.817 11 N -1.128 6.128 12 S 2.607 3.393 13 O -0.970 6.970 14 O -0.945 6.945 15 C -0.555 4.555 16 C 0.043 3.957 17 C -0.516 4.516 18 H 0.069 0.931 19 C 0.083 3.917 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.181 0.819 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.411 0.589 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.263 0.737 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 15.206 -0.677 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.149 5.149 3 N -0.113 5.113 4 C -0.136 4.136 5 C -0.195 4.195 6 C -0.097 4.097 7 C -0.213 4.213 8 C -0.210 4.210 9 C -0.046 4.046 10 C 0.055 3.945 11 N -0.885 5.885 12 S 2.704 3.296 13 O -0.961 6.961 14 O -0.935 6.935 15 C -0.688 4.688 16 C 0.041 3.959 17 C -0.553 4.553 18 H 0.087 0.913 19 C -0.122 4.122 20 N -0.511 5.511 21 Si 0.718 3.282 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.245 4.245 26 C -0.180 4.180 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.198 0.802 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.140 15.542 -0.818 15.877 hybrid contribution 0.283 -0.784 0.608 1.031 sum 3.423 14.758 -0.211 15.151 Atomic orbital electron populations 1.21942 0.74087 1.04807 1.03753 1.48381 1.06534 1.03171 1.56800 1.77346 1.01585 1.07949 1.24434 1.23660 0.95150 0.94318 1.00517 1.19085 0.92612 0.93089 1.14701 1.20282 0.87110 0.98904 1.03427 1.22953 0.97795 1.00425 1.00146 1.23000 1.03169 1.03297 0.91571 1.20652 0.90823 0.89954 1.03200 1.19711 1.02070 0.88665 0.84058 1.56093 1.91743 1.27973 1.12665 1.05240 0.78169 0.71516 0.74715 1.93518 1.88299 1.84852 1.29388 1.93539 1.49232 1.74793 1.75901 1.30000 1.18115 1.07028 1.13643 1.18274 0.94840 0.88301 0.94523 1.20520 1.12284 1.22592 0.99915 0.91325 1.24941 0.94439 0.96354 0.96467 1.69969 1.33619 1.41908 1.05564 0.86587 0.80462 0.82385 0.78807 1.19987 1.21079 1.19409 1.23202 1.07859 1.02140 0.91346 1.22554 0.94186 1.01412 0.99839 0.90395 0.89147 0.89055 0.80222 0.86637 0.88954 0.88613 0.88484 0.88955 0.87503 0.90636 0.75665 0.84821 0.88272 0.92710 0.90693 0.89486 0.89555 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.09 59.85 0.66 1.46 16 2 N -0.37 -4.33 4.01 -63.89 -0.26 -4.59 16 3 N -0.29 -3.77 12.58 30.62 0.39 -3.39 16 4 C 0.05 0.57 11.35 -17.37 -0.20 0.37 16 5 C -0.18 -2.27 5.76 -105.06 -0.61 -2.88 16 6 C -0.08 -0.93 5.95 -91.77 -0.55 -1.47 16 7 C -0.18 -1.67 10.02 -26.73 -0.27 -1.94 16 8 C -0.17 -1.87 10.23 -26.73 -0.27 -2.14 16 9 C 0.08 1.03 6.33 -82.27 -0.52 0.51 16 10 C 0.18 2.34 5.93 -5.19 -0.03 2.31 16 11 N -1.13 -15.81 5.88 -11.66 -0.07 -15.87 16 12 S 2.61 49.46 5.19 -107.50 -0.56 48.90 16 13 O -0.97 -20.49 18.08 -57.54 -1.04 -21.53 16 14 O -0.94 -21.19 17.16 -57.54 -0.99 -22.18 16 15 C -0.55 -10.82 5.93 37.16 0.22 -10.60 16 16 C 0.04 1.00 1.32 -155.66 -0.21 0.80 16 17 C -0.52 -13.66 8.18 -34.44 -0.28 -13.94 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C 0.08 2.19 5.38 -17.82 -0.10 2.10 16 20 N -0.88 -23.22 12.98 55.43 0.72 -22.50 16 21 Si 0.89 20.83 29.55 -169.99 -5.02 15.81 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 26 C -0.14 -3.08 9.49 -26.69 -0.25 -3.34 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.65 7.67 -51.93 -0.40 0.26 16 30 H 0.18 1.58 7.19 -52.48 -0.38 1.20 16 31 H 0.12 1.47 7.42 -51.93 -0.39 1.09 16 32 H 0.09 0.75 6.97 -51.93 -0.36 0.39 16 33 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.45 6.88 -51.93 -0.36 1.09 16 37 H 0.08 0.81 7.73 -51.93 -0.40 0.41 16 38 H 0.41 5.16 8.61 -34.47 -0.30 4.86 16 39 H 0.13 2.67 8.14 -51.92 -0.42 2.24 16 40 H 0.10 1.59 8.09 -51.93 -0.42 1.17 16 41 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 44 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -33.22 391.81 -10.36 -43.58 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.77 Total: 9.32 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: -2.66 Total: -33.45 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.78 Total: -46.35 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -2.03 Total: -43.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 49.46 SS G_CDS: -0.56 Total: 48.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.22 -10.36 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594853494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.301 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds