Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47129 * 2 1 4 4 C 1.34949 * 116.99755 * 180.02562 * 3 2 1 5 5 O 1.21676 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.41739 * 119.99367 * 179.97438 * 4 3 2 7 7 C 1.36837 * 126.11296 * 179.97438 * 6 4 3 8 8 N 1.30815 * 114.01308 * 179.97438 * 7 6 4 9 9 C 1.30271 * 117.27681 * 0.02562 * 8 7 6 10 10 N 1.37800 * 124.74028 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99843 * 0.02562 * 10 9 8 12 12 C 1.53000 * 109.46918 * 180.02562 * 11 10 9 13 13 C 1.53045 * 109.45879 * 175.00225 * 12 11 10 14 14 C 1.53184 * 109.31045 * 181.38455 * 13 12 11 15 15 N 1.46928 * 108.89946 * 305.29664 * 14 13 12 16 16 C 1.36937 * 120.62751 * 233.68087 * 15 14 13 17 17 H 1.07999 * 120.00448 * 27.38666 * 16 15 14 18 18 C 1.38820 * 119.99269 * 207.39032 * 16 15 14 19 19 N 1.31613 * 120.00097 * 17.25596 * 18 16 15 20 20 Si 1.86807 * 119.99669 * 197.25602 * 18 16 15 21 21 H 1.48497 * 109.46957 * 60.00245 * 20 18 16 22 22 H 1.48494 * 109.47182 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47157 * 300.00224 * 20 18 16 24 24 C 1.47200 * 118.55359 * 53.53256 * 15 14 13 25 25 C 1.53036 * 109.46048 * 295.07033 * 12 11 10 26 26 S 1.70918 * 110.51816 * 0.24172 * 9 8 7 27 27 H 1.09005 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47075 * 299.99909 * 1 2 3 29 29 H 1.09002 * 109.47036 * 60.00258 * 1 2 3 30 30 H 1.08998 * 109.47275 * 239.99576 * 2 1 3 31 31 H 1.09002 * 109.47036 * 119.99742 * 2 1 3 32 32 H 1.07999 * 122.99247 * 0.02701 * 7 6 4 33 33 H 0.97002 * 120.00145 * 180.02562 * 10 9 8 34 34 H 1.08998 * 109.47080 * 60.00754 * 11 10 9 35 35 H 1.08996 * 109.47459 * 300.00549 * 11 10 9 36 36 H 1.08993 * 109.44999 * 55.03856 * 12 11 10 37 37 H 1.09004 * 109.49609 * 61.43751 * 13 12 11 38 38 H 1.09000 * 109.49498 * 301.33584 * 13 12 11 39 39 H 1.09005 * 109.58718 * 65.15681 * 14 13 12 40 40 H 1.09001 * 109.58894 * 185.43430 * 14 13 12 41 41 H 0.97008 * 119.99917 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.53557 * 186.67857 * 24 15 14 43 43 H 1.09002 * 109.67524 * 66.37760 * 24 15 14 44 44 H 1.09007 * 109.49849 * 298.56719 * 25 12 11 45 45 H 1.09003 * 109.49941 * 58.63212 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 -0.0005 5 8 4.0854 0.5591 -0.0005 6 6 3.8859 2.8339 -0.0011 7 6 5.2156 3.1567 -0.0012 8 7 5.4510 4.4435 -0.0023 9 6 4.4195 5.2391 -0.0027 10 7 4.4893 6.6153 -0.0033 11 6 5.7936 7.2826 -0.0042 12 6 5.5906 8.7991 -0.0041 13 6 6.9479 9.4952 0.1206 14 6 6.7379 11.0122 0.1552 15 7 5.9640 11.4126 -1.0279 16 6 6.4277 12.3908 -1.8665 17 1 7.4895 12.5672 -1.9555 18 6 5.5328 13.1556 -2.6022 19 7 4.2620 13.1908 -2.2616 20 14 6.1325 14.1350 -4.0756 21 1 6.7226 13.2110 -5.0772 22 1 4.9897 14.8610 -4.6857 23 1 7.1616 15.1109 -3.6357 24 6 4.6831 10.7372 -1.2924 25 6 4.9161 9.2232 -1.3107 26 16 2.9675 4.3375 0.0052 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 6.0008 2.4152 -0.0012 33 1 3.6749 7.1423 -0.0032 34 1 6.3506 6.9904 -0.8944 35 1 6.3516 6.9910 0.8855 36 1 4.9593 9.0807 0.8385 37 1 7.5709 9.2335 -0.7347 38 1 7.4379 9.1747 1.0400 39 1 6.1920 11.2850 1.0584 40 1 7.7048 11.5152 0.1467 41 1 3.6368 13.7256 -2.7755 42 1 4.2942 11.0588 -2.2585 43 1 3.9677 10.9874 -0.5090 44 1 5.5583 8.9641 -2.1525 45 1 3.9603 8.7088 -1.4105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596157628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -26.918198 kcal Electronic energy + Delta-G solvation = -26131.838170 eV Core-core repulsion = 22276.513994 eV Total energy + Delta-G solvation = -3855.324175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81228 -39.87046 -38.26547 -36.88537 -35.88514 -33.31864 -32.15802 -31.03118 -29.97267 -29.89254 -27.30398 -25.40986 -24.33886 -23.54901 -22.33573 -22.20573 -21.30439 -19.71475 -19.60045 -19.10968 -17.67070 -16.93196 -16.89497 -16.83142 -16.09275 -15.46270 -15.06063 -14.87535 -14.48842 -14.43087 -14.07262 -13.71459 -13.59896 -13.57913 -13.24860 -13.13854 -12.59530 -12.42209 -12.32066 -12.09718 -11.98089 -11.67810 -11.48326 -11.06305 -10.87154 -10.76939 -10.76377 -10.70527 -10.46118 -10.34536 -10.28190 -9.98119 -9.90858 -9.64889 -9.61939 -9.53513 -8.52403 -8.01597 -6.74122 -5.84472 -3.26052 0.13785 0.73151 1.41858 2.18132 2.55477 2.90253 2.92518 3.35073 3.41046 3.42361 4.25819 4.45350 4.60341 4.62251 4.80944 4.90418 4.93580 5.01371 5.08919 5.23270 5.35181 5.42341 5.43161 5.47210 5.58822 5.62944 5.73843 5.77866 5.88774 6.03644 6.19143 6.20111 6.34665 6.44791 6.51980 6.58605 6.64380 6.70659 6.77228 6.90094 7.27512 7.56699 7.56874 7.60733 7.74178 8.39076 9.15510 9.79138 10.35637 11.24311 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.001923 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.246897 B =14555.271429 C =15151.072447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.355 6.355 4 C 0.559 3.441 5 O -0.517 6.517 6 C -0.368 4.368 7 C 0.215 3.785 8 N -0.559 5.559 9 C 0.340 3.660 10 N -0.664 5.664 11 C 0.130 3.870 12 C -0.092 4.092 13 C -0.123 4.123 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.170 3.830 25 C -0.136 4.136 26 S 0.162 5.838 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.189 0.811 33 H 0.420 0.580 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.088 0.912 43 H 0.017 0.983 44 H 0.058 0.942 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 -21.970 6.353 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.272 6.272 4 C 0.405 3.595 5 O -0.408 6.408 6 C -0.493 4.493 7 C 0.051 3.949 8 N -0.285 5.285 9 C -0.029 4.029 10 N -0.298 5.298 11 C 0.005 3.995 12 C -0.112 4.112 13 C -0.163 4.163 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.044 3.956 25 C -0.176 4.176 26 S 0.413 5.587 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.206 0.794 33 H 0.259 0.741 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.990 -21.433 6.278 23.123 hybrid contribution 0.607 -0.070 -0.789 0.998 sum -5.383 -21.503 5.489 22.836 Atomic orbital electron populations 1.21815 0.92568 1.02954 1.03596 1.22617 0.95369 0.80621 1.02496 1.86194 1.23944 1.32266 1.84843 1.17984 0.80544 0.87864 0.73057 1.90891 1.60108 1.41621 1.48200 1.23129 0.96928 0.95006 1.34244 1.22248 0.93666 0.90931 0.88019 1.66359 1.30642 1.02978 1.28510 1.24173 0.93702 0.91244 0.93740 1.44439 1.11278 0.99519 1.74590 1.21831 0.82479 0.92602 1.02576 1.21359 0.99054 0.91019 0.99735 1.21977 0.94956 0.98642 1.00732 1.20881 0.95854 0.91172 0.90203 1.44091 1.21418 1.41249 1.24710 1.19147 0.91497 1.09822 1.17776 0.91682 1.25027 0.96009 0.97817 1.00806 1.70013 1.02637 1.42669 1.39498 0.86369 0.77619 0.79747 0.83045 1.21036 1.21636 1.20851 1.20813 0.87268 0.85864 1.01685 1.22275 0.98423 1.01007 0.95845 1.84160 1.06305 0.96002 1.72229 0.90268 0.91463 0.91427 0.91456 0.91477 0.79381 0.74106 0.90845 0.91164 0.91109 0.91921 0.92792 0.96496 0.92648 0.93574 0.89378 0.96453 0.92309 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.52 6.10 37.16 0.23 0.75 16 3 O -0.36 -3.89 9.91 -41.18 -0.41 -4.29 16 4 C 0.56 6.93 7.73 32.07 0.25 7.18 16 5 O -0.52 -7.34 16.55 -19.40 -0.32 -7.66 16 6 C -0.37 -4.33 6.32 -38.75 -0.25 -4.57 16 7 C 0.21 2.49 11.08 -18.49 -0.20 2.29 16 8 N -0.56 -7.06 10.06 -14.75 -0.15 -7.20 16 9 C 0.34 3.92 8.05 -87.99 -0.71 3.21 16 10 N -0.66 -7.22 5.40 -62.40 -0.34 -7.56 16 11 C 0.13 1.56 5.31 -4.04 -0.02 1.54 16 12 C -0.09 -1.30 2.19 -90.58 -0.20 -1.50 16 13 C -0.12 -1.89 5.36 -26.61 -0.14 -2.04 16 14 C 0.15 2.84 6.50 -3.71 -0.02 2.81 16 15 N -0.59 -14.07 3.01 -172.10 -0.52 -14.59 16 16 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16 17 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -25.50 11.18 55.49 0.62 -24.88 16 20 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.17 3.75 5.33 -3.56 -0.02 3.73 16 25 C -0.14 -2.27 5.25 -26.61 -0.14 -2.41 16 26 S 0.16 1.66 22.99 -107.50 -2.47 -0.81 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 32 H 0.19 1.84 8.04 -52.49 -0.42 1.42 16 33 H 0.42 3.97 7.77 -40.82 -0.32 3.65 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.64 7.15 -51.93 -0.37 0.27 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -30.73 382.94 -10.80 -41.53 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.88 Total: -0.14 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.08 Total: 3.61 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.38 Total: -54.23 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.73 Total: -11.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.47 Total: -0.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.73 -10.80 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596157628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.607 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds