Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47129 * 2 1 4 4 C 1.34949 * 116.99755 * 180.02562 * 3 2 1 5 5 O 1.21676 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.41739 * 119.99367 * 179.97438 * 4 3 2 7 7 C 1.36837 * 126.11296 * 179.97438 * 6 4 3 8 8 N 1.30815 * 114.01308 * 179.97438 * 7 6 4 9 9 C 1.30271 * 117.27681 * 0.02562 * 8 7 6 10 10 N 1.37800 * 124.74028 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99843 * 0.02562 * 10 9 8 12 12 C 1.53000 * 109.46918 * 180.02562 * 11 10 9 13 13 C 1.53045 * 109.45879 * 175.00225 * 12 11 10 14 14 C 1.53184 * 109.31045 * 181.38455 * 13 12 11 15 15 N 1.46928 * 108.89946 * 305.29664 * 14 13 12 16 16 C 1.36937 * 120.62751 * 233.68087 * 15 14 13 17 17 H 1.07999 * 120.00448 * 27.38666 * 16 15 14 18 18 C 1.38820 * 119.99269 * 207.39032 * 16 15 14 19 19 N 1.31613 * 120.00097 * 17.25596 * 18 16 15 20 20 Si 1.86807 * 119.99669 * 197.25602 * 18 16 15 21 21 H 1.48497 * 109.46957 * 60.00245 * 20 18 16 22 22 H 1.48494 * 109.47182 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47157 * 300.00224 * 20 18 16 24 24 C 1.47200 * 118.55359 * 53.53256 * 15 14 13 25 25 C 1.53036 * 109.46048 * 295.07033 * 12 11 10 26 26 S 1.70918 * 110.51816 * 0.24172 * 9 8 7 27 27 H 1.09005 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47075 * 299.99909 * 1 2 3 29 29 H 1.09002 * 109.47036 * 60.00258 * 1 2 3 30 30 H 1.08998 * 109.47275 * 239.99576 * 2 1 3 31 31 H 1.09002 * 109.47036 * 119.99742 * 2 1 3 32 32 H 1.07999 * 122.99247 * 0.02701 * 7 6 4 33 33 H 0.97002 * 120.00145 * 180.02562 * 10 9 8 34 34 H 1.08998 * 109.47080 * 60.00754 * 11 10 9 35 35 H 1.08996 * 109.47459 * 300.00549 * 11 10 9 36 36 H 1.08993 * 109.44999 * 55.03856 * 12 11 10 37 37 H 1.09004 * 109.49609 * 61.43751 * 13 12 11 38 38 H 1.09000 * 109.49498 * 301.33584 * 13 12 11 39 39 H 1.09005 * 109.58718 * 65.15681 * 14 13 12 40 40 H 1.09001 * 109.58894 * 185.43430 * 14 13 12 41 41 H 0.97008 * 119.99917 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.53557 * 186.67857 * 24 15 14 43 43 H 1.09002 * 109.67524 * 66.37760 * 24 15 14 44 44 H 1.09007 * 109.49849 * 298.56719 * 25 12 11 45 45 H 1.09003 * 109.49941 * 58.63212 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 -0.0005 5 8 4.0854 0.5591 -0.0005 6 6 3.8859 2.8339 -0.0011 7 6 5.2156 3.1567 -0.0012 8 7 5.4510 4.4435 -0.0023 9 6 4.4195 5.2391 -0.0027 10 7 4.4893 6.6153 -0.0033 11 6 5.7936 7.2826 -0.0042 12 6 5.5906 8.7991 -0.0041 13 6 6.9479 9.4952 0.1206 14 6 6.7379 11.0122 0.1552 15 7 5.9640 11.4126 -1.0279 16 6 6.4277 12.3908 -1.8665 17 1 7.4895 12.5672 -1.9555 18 6 5.5328 13.1556 -2.6022 19 7 4.2620 13.1908 -2.2616 20 14 6.1325 14.1350 -4.0756 21 1 6.7226 13.2110 -5.0772 22 1 4.9897 14.8610 -4.6857 23 1 7.1616 15.1109 -3.6357 24 6 4.6831 10.7372 -1.2924 25 6 4.9161 9.2232 -1.3107 26 16 2.9675 4.3375 0.0052 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 6.0008 2.4152 -0.0012 33 1 3.6749 7.1423 -0.0032 34 1 6.3506 6.9904 -0.8944 35 1 6.3516 6.9910 0.8855 36 1 4.9593 9.0807 0.8385 37 1 7.5709 9.2335 -0.7347 38 1 7.4379 9.1747 1.0400 39 1 6.1920 11.2850 1.0584 40 1 7.7048 11.5152 0.1467 41 1 3.6368 13.7256 -2.7755 42 1 4.2942 11.0588 -2.2585 43 1 3.9677 10.9874 -0.5090 44 1 5.5583 8.9641 -2.1525 45 1 3.9603 8.7088 -1.4105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596157628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -43.936114 kcal Electronic energy + Delta-G solvation = -26132.576122 eV Core-core repulsion = 22276.513994 eV Total energy + Delta-G solvation = -3856.062127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70137 -40.77072 -39.58286 -37.80861 -37.08717 -34.90224 -32.90867 -32.54270 -31.50495 -30.88605 -28.66299 -26.52600 -25.69887 -24.43092 -23.76369 -23.20509 -22.57884 -20.90033 -20.51915 -20.28669 -18.77767 -18.46863 -17.78544 -17.74522 -17.03633 -16.73946 -16.39375 -15.99084 -15.71041 -15.32524 -15.30026 -15.19354 -14.93979 -14.69664 -14.43461 -13.95292 -13.88899 -13.62138 -13.57107 -13.06936 -12.97041 -12.84028 -12.64031 -12.54674 -12.43124 -12.32842 -12.01890 -11.85067 -11.81618 -11.61687 -11.50701 -11.43084 -11.18415 -11.05482 -10.78175 -10.52161 -10.47369 -8.88551 -8.66590 -7.87249 -5.30633 -0.74499 -0.11868 0.56230 1.27151 1.46490 1.48618 1.54971 1.76101 2.02458 2.04825 2.51482 3.26955 3.37652 3.71219 3.82814 3.94481 3.95858 4.02609 4.06508 4.10542 4.21809 4.37243 4.53425 4.54465 4.65473 4.70713 4.74293 4.85601 4.86912 4.93538 4.94328 5.04586 5.14640 5.17424 5.27212 5.30650 5.42345 5.43410 5.52662 5.62042 5.68890 5.80673 5.92610 6.40150 6.67156 6.75005 7.16439 7.88981 8.39228 9.18725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.001923 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.246897 B =14555.271429 C =15151.072447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.558 3.442 5 O -0.542 6.542 6 C -0.386 4.386 7 C 0.214 3.786 8 N -0.577 5.577 9 C 0.330 3.670 10 N -0.660 5.660 11 C 0.145 3.855 12 C -0.081 4.081 13 C -0.113 4.113 14 C 0.139 3.861 15 N -0.612 5.612 16 C -0.261 4.261 17 H 0.064 0.936 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.276 1.276 24 C 0.173 3.827 25 C -0.122 4.122 26 S 0.206 5.794 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.200 0.800 33 H 0.428 0.572 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.016 0.984 40 H 0.051 0.949 41 H 0.249 0.751 42 H 0.049 0.951 43 H 0.000 1.000 44 H 0.047 0.953 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 -23.428 6.902 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.406 3.594 5 O -0.435 6.435 6 C -0.510 4.510 7 C 0.050 3.950 8 N -0.303 5.303 9 C -0.038 4.038 10 N -0.296 5.296 11 C 0.020 3.980 12 C -0.100 4.100 13 C -0.153 4.153 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.392 4.392 17 H 0.082 0.918 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.791 3.209 21 H -0.206 1.206 22 H -0.221 1.221 23 H -0.202 1.202 24 C 0.048 3.952 25 C -0.161 4.161 26 S 0.457 5.543 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.217 0.783 33 H 0.268 0.732 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.018 0.982 44 H 0.066 0.934 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.056 -22.904 6.845 24.660 hybrid contribution 0.595 0.361 -0.907 1.143 sum -5.461 -22.543 5.938 23.943 Atomic orbital electron populations 1.21834 0.90403 1.04426 1.03642 1.22908 0.97052 0.79484 1.02551 1.86193 1.23084 1.33837 1.84457 1.18115 0.80894 0.87847 0.72507 1.90870 1.60708 1.42433 1.49518 1.23273 0.97515 0.95613 1.34634 1.22439 0.94061 0.90942 0.87569 1.66381 1.31456 1.03387 1.29042 1.24284 0.94365 0.91349 0.93814 1.44333 1.11221 0.99410 1.74644 1.21540 0.83005 0.90665 1.02776 1.21200 0.98104 0.92493 0.98218 1.21833 0.95886 0.95335 1.02199 1.21062 0.94923 0.94153 0.88491 1.44381 1.22106 1.41159 1.25934 1.19467 0.91594 1.10020 1.18093 0.91804 1.25729 0.96247 0.99365 1.03286 1.70160 1.03542 1.43793 1.40485 0.85410 0.76932 0.78473 0.80066 1.20636 1.22084 1.20199 1.20654 0.86400 0.89274 0.98883 1.22049 0.99913 0.96959 0.97143 1.83996 1.04598 0.94400 1.71302 0.88096 0.91312 0.91421 0.91518 0.91392 0.78312 0.73220 0.91574 0.90083 0.90308 0.92500 0.89478 0.96596 0.93055 0.94173 0.93208 0.98197 0.93444 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16 2 C 0.05 0.83 6.10 71.98 0.44 1.27 16 3 O -0.36 -7.46 9.91 -58.66 -0.58 -8.04 16 4 C 0.56 13.39 7.73 68.69 0.53 13.92 16 5 O -0.54 -15.18 16.55 19.26 0.32 -14.86 16 6 C -0.39 -8.55 6.32 22.81 0.14 -8.40 16 7 C 0.21 4.66 11.08 84.52 0.94 5.60 16 8 N -0.58 -13.43 10.06 -200.59 -2.02 -15.45 16 9 C 0.33 6.85 8.05 179.43 1.44 8.30 16 10 N -0.66 -12.58 5.40 -351.34 -1.90 -14.47 16 11 C 0.15 3.07 5.31 86.38 0.46 3.53 16 12 C -0.08 -2.08 2.19 -10.77 -0.02 -2.10 16 13 C -0.11 -3.21 5.36 30.67 0.16 -3.05 16 14 C 0.14 5.32 6.50 86.36 0.56 5.88 16 15 N -0.61 -29.34 3.01 -698.39 -2.10 -31.44 16 16 C -0.26 -14.09 9.59 84.04 0.81 -13.29 16 17 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 18 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 19 N -0.93 -54.14 11.18 21.65 0.24 -53.89 16 20 Si 0.96 44.35 29.59 68.60 2.03 46.37 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 C 0.17 7.78 5.33 86.31 0.46 8.24 16 25 C -0.12 -3.91 5.25 30.67 0.16 -3.75 16 26 S 0.21 3.78 22.99 -56.49 -1.30 2.48 16 27 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 31 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.20 3.69 8.04 -2.91 -0.02 3.67 16 33 H 0.43 6.83 7.77 -92.71 -0.72 6.11 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 41 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 42 H 0.05 2.61 6.04 -2.39 -0.01 2.59 16 43 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.07 1.88 7.15 -2.39 -0.02 1.87 16 Total: -1.00 -67.34 382.94 2.22 -65.12 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.28 Total: 11.07 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 7.24 Total: 13.11 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -5.77 Total: -115.26 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.26 Total: -22.90 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.30 Total: 2.48 kcal Total: -67.34 2.22 -65.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596157628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.182 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds