Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47191 * 2 1 4 4 C 1.34952 * 117.00010 * 179.97438 * 3 2 1 5 5 O 1.21677 * 119.99971 * 359.97438 * 4 3 2 6 6 C 1.41741 * 119.99897 * 180.02562 * 4 3 2 7 7 S 1.76190 * 126.11524 * 0.26894 * 6 4 3 8 8 C 1.70922 * 90.42148 * 180.02562 * 7 6 4 9 9 N 1.37795 * 124.74198 * 179.97438 * 8 7 6 10 10 C 1.46961 * 110.99806 * 359.69572 * 9 8 7 11 11 C 1.53059 * 109.36302 * 183.18595 * 10 9 8 12 12 N 1.46952 * 109.36370 * 301.60193 * 11 10 9 13 13 C 1.46906 * 110.99889 * 183.18679 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00017 * 13 12 11 15 15 H 1.08005 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00548 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99807 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47278 * 90.00449 * 18 16 14 20 20 H 1.48502 * 109.46981 * 210.00137 * 18 16 14 21 21 H 1.48498 * 109.47192 * 330.00330 * 18 16 14 22 22 C 1.46961 * 110.88410 * 59.32054 * 12 11 10 23 23 C 1.46955 * 111.00109 * 123.49679 * 9 8 7 24 24 N 1.30271 * 110.51488 * 359.69433 * 8 7 6 25 25 C 1.30811 * 117.27514 * 0.23769 * 24 8 7 26 26 C 1.50703 * 122.98932 * 180.02562 * 25 24 8 27 27 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47085 * 300.00451 * 1 2 3 29 29 H 1.08999 * 109.47037 * 60.00215 * 1 2 3 30 30 H 1.09000 * 109.47522 * 240.00167 * 2 1 3 31 31 H 1.08999 * 109.47037 * 119.99785 * 2 1 3 32 32 H 1.09003 * 109.48904 * 63.22227 * 10 9 8 33 33 H 1.08997 * 109.51213 * 303.16513 * 10 9 8 34 34 H 1.08999 * 109.48651 * 181.63251 * 11 10 9 35 35 H 1.08996 * 109.48556 * 61.57139 * 11 10 9 36 36 H 1.08993 * 109.47164 * 289.99960 * 13 12 11 37 37 H 1.08996 * 109.46920 * 49.99994 * 13 12 11 38 38 H 0.96999 * 120.00406 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.48904 * 60.64354 * 22 12 11 40 40 H 1.09002 * 109.49205 * 180.70887 * 22 12 11 41 41 H 1.09008 * 109.48713 * 296.78161 * 23 9 8 42 42 H 1.09002 * 109.48661 * 56.82124 * 23 9 8 43 43 H 1.08997 * 109.47342 * 89.97993 * 26 25 24 44 44 H 1.09001 * 109.47406 * 209.97923 * 26 25 24 45 45 H 1.09004 * 109.47301 * 329.97810 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 0.0005 5 8 4.0854 0.5591 0.0015 6 6 3.8860 2.8339 0.0011 7 16 2.9676 4.3375 0.0079 8 6 4.4197 5.2391 0.0033 9 7 4.4896 6.6153 0.0050 10 6 3.1461 7.2108 0.0041 11 6 3.2664 8.7346 -0.0741 12 7 4.0540 9.2204 1.0674 13 6 4.1285 10.6876 1.0693 14 6 4.7251 11.1586 2.3706 15 1 5.0191 10.4399 3.1213 16 6 4.8947 12.5069 2.6032 17 7 5.4158 12.9181 3.7385 18 14 4.3855 13.7499 1.3050 19 1 2.9704 14.1432 1.5242 20 1 5.2537 14.9508 1.4020 21 1 4.5276 13.1439 -0.0432 22 6 5.3976 8.6249 1.0683 23 6 5.2772 7.1012 1.1466 24 7 5.4512 4.4434 0.0038 25 6 5.2156 3.1566 0.0028 26 6 6.3112 2.1219 0.0038 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.6249 6.9338 0.9206 33 1 2.5865 6.8455 -0.8570 34 1 2.2719 9.1799 -0.0457 35 1 3.7633 9.0128 -1.0035 36 1 4.7541 11.0207 0.2412 37 1 3.1268 11.1024 0.9577 38 1 5.5354 13.8667 3.9020 39 1 5.9187 8.9019 0.1519 40 1 5.9568 8.9903 1.9296 41 1 4.7802 6.8229 2.0760 42 1 6.2716 6.6555 1.1183 43 1 6.5742 1.8721 1.0317 44 1 5.9650 1.2255 -0.5107 45 1 7.1871 2.5196 -0.5089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601262766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -20.022926 kcal Electronic energy + Delta-G solvation = -26818.309278 eV Core-core repulsion = 22963.284104 eV Total energy + Delta-G solvation = -3855.025174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.02092 -40.32326 -38.92861 -36.92192 -35.63281 -32.65940 -32.18328 -31.43743 -30.96012 -28.98446 -28.81552 -25.89186 -24.23077 -23.80439 -23.18175 -22.19634 -21.37574 -19.86336 -19.58357 -18.83468 -17.40630 -17.04188 -16.99068 -16.85365 -15.93841 -15.66276 -14.91993 -14.78217 -14.66088 -14.42595 -14.16469 -13.92779 -13.83355 -13.70292 -13.34283 -13.20611 -12.75488 -12.63805 -12.44365 -12.34716 -12.30563 -11.95657 -11.78010 -11.49501 -11.32676 -11.10231 -10.98796 -10.78931 -10.74622 -10.59300 -10.39753 -10.27733 -9.97444 -9.79841 -9.45128 -9.36620 -8.65445 -8.30020 -7.61987 -6.13605 -4.12360 -0.07300 0.86043 1.38059 2.04902 2.51086 2.77194 3.03051 3.22350 3.30626 3.31281 4.23759 4.34048 4.46658 4.58733 4.59006 4.68886 4.74336 4.84453 4.92978 4.99378 5.15490 5.19425 5.26240 5.37117 5.42136 5.42952 5.47231 5.49492 5.58825 5.61346 5.66400 5.76231 5.95036 5.96483 6.16880 6.24903 6.31126 6.42493 6.51832 6.71783 6.83301 7.43445 7.49030 7.52553 7.68050 7.82733 8.52804 8.93159 9.47142 10.99136 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.002294 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.868701 B =12201.114475 C =12854.101077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.557 3.443 5 O -0.508 6.508 6 C -0.354 4.354 7 S 0.172 5.828 8 C 0.270 3.730 9 N -0.437 5.437 10 C 0.043 3.957 11 C 0.056 3.944 12 N -0.530 5.530 13 C 0.163 3.837 14 C -0.514 4.514 15 H 0.081 0.919 16 C 0.070 3.930 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.063 3.937 23 C 0.067 3.933 24 N -0.515 5.515 25 C 0.217 3.783 26 C -0.094 4.094 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.040 0.960 36 H -0.008 1.008 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.037 0.963 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 -23.022 -9.437 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.404 3.596 5 O -0.399 6.399 6 C -0.477 4.477 7 S 0.427 5.573 8 C -0.095 4.095 9 N -0.156 5.156 10 C -0.084 4.084 11 C -0.073 4.073 12 N -0.255 5.255 13 C 0.037 3.963 14 C -0.552 4.552 15 H 0.099 0.901 16 C -0.132 4.132 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.066 4.066 23 C -0.060 4.060 24 N -0.235 5.235 25 C 0.073 3.927 26 C -0.153 4.153 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.010 0.990 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.676 -22.455 -9.314 25.493 hybrid contribution 0.453 0.191 -0.897 1.023 sum -7.223 -22.264 -10.211 25.537 Atomic orbital electron populations 1.21816 0.92513 1.02990 1.03639 1.22633 0.95427 0.80506 1.02529 1.86201 1.23773 1.32392 1.84753 1.17961 0.80618 0.87828 0.73234 1.90839 1.59726 1.41658 1.47697 1.23202 0.96965 0.95916 1.31580 1.84227 1.09305 0.95695 1.68045 1.25856 0.92804 0.94798 0.96088 1.58121 1.17095 0.98751 1.41588 1.22667 0.85844 0.97169 1.02740 1.22105 1.00106 0.91164 0.93972 1.62185 1.13676 1.10501 1.39139 1.20175 0.96502 0.81951 0.97627 1.20979 1.40872 0.92733 1.00623 0.90084 1.24897 0.94788 0.98275 0.95276 1.69883 1.44564 1.15457 1.23678 0.86868 0.78921 0.81364 0.82628 1.20104 1.21140 1.19268 1.22152 0.91579 0.90066 1.02757 1.22604 0.97937 0.97159 0.88278 1.66200 1.31238 1.02421 1.23668 1.20834 0.92200 0.90165 0.89507 1.20759 0.94776 0.95735 1.04043 0.90219 0.91391 0.91449 0.91430 0.91385 0.91021 0.89350 0.89428 0.94217 0.98981 0.95493 0.92539 0.94431 0.87593 0.91914 0.88503 0.89515 0.88200 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.52 6.10 37.16 0.23 0.75 16 3 O -0.35 -3.94 9.91 -41.19 -0.41 -4.35 16 4 C 0.56 7.04 7.73 32.07 0.25 7.29 16 5 O -0.51 -6.92 13.93 -19.40 -0.27 -7.19 16 6 C -0.35 -4.53 6.32 -38.76 -0.25 -4.77 16 7 S 0.17 2.00 20.87 -107.50 -2.24 -0.24 16 8 C 0.27 3.67 6.77 -87.99 -0.60 3.08 16 9 N -0.44 -6.13 4.76 -175.34 -0.83 -6.97 16 10 C 0.04 0.54 4.62 -3.76 -0.02 0.53 16 11 C 0.06 0.83 5.61 -3.77 -0.02 0.81 16 12 N -0.53 -10.03 4.70 -235.91 -1.11 -11.13 16 13 C 0.16 3.68 3.79 -4.97 -0.02 3.66 16 14 C -0.51 -13.79 9.03 -34.44 -0.31 -14.10 16 15 H 0.08 2.36 7.38 -52.48 -0.39 1.98 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 18 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 22 C 0.06 1.11 5.43 -3.77 -0.02 1.09 16 23 C 0.07 0.99 5.50 -3.77 -0.02 0.97 16 24 N -0.51 -7.35 10.17 -10.93 -0.11 -7.46 16 25 C 0.22 2.83 6.83 -83.54 -0.57 2.26 16 26 C -0.09 -1.01 9.67 36.01 0.35 -0.66 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 33 H 0.09 0.92 7.59 -51.93 -0.39 0.52 16 34 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H -0.01 -0.17 7.18 -51.93 -0.37 -0.55 16 37 H 0.03 0.60 7.45 -51.93 -0.39 0.22 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 2.06 6.79 -51.93 -0.35 1.71 16 41 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.10 1.39 7.87 -51.93 -0.41 0.98 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.10 1.09 5.99 -51.93 -0.31 0.78 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -30.87 375.57 -10.76 -41.63 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.83 Total: -2.35 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.71 Total: 2.24 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -1.28 Total: -51.37 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.68 Total: -11.54 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.24 Total: -0.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.87 -10.76 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.610 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds