Wall clock time and date at job start Sat Apr 11 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28093 * 119.15128 * 2 1 4 4 C 1.31198 * 122.96240 * 179.08912 * 3 2 1 5 5 C 1.39828 * 119.66395 * 359.53739 * 4 3 2 6 6 C 1.36834 * 118.75710 * 1.11309 * 5 4 3 7 7 C 1.34679 * 119.15937 * 179.73293 * 2 1 3 8 8 O 1.22059 * 120.52510 * 1.29010 * 7 2 1 9 9 C 1.50512 * 122.52277 * 181.55895 * 5 4 3 10 10 N 1.46782 * 109.46149 * 348.19258 * 9 5 4 11 11 C 1.34780 * 121.27053 * 224.55397 * 10 9 5 12 12 O 1.21610 * 120.00026 * 174.73837 * 11 10 9 13 13 C 1.47436 * 119.99554 * 354.73894 * 11 10 9 14 14 C 1.39213 * 120.28180 * 313.96110 * 13 11 10 15 15 C 1.38229 * 120.09161 * 179.79034 * 14 13 11 16 16 C 1.38825 * 120.67110 * 0.47177 * 15 14 13 17 17 C 1.37592 * 120.57506 * 359.78621 * 16 15 14 18 18 C 1.40705 * 119.88197 * 359.97438 * 17 16 15 19 19 C 1.40891 * 120.33151 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99539 * 151.94809 * 19 18 17 21 21 C 1.40264 * 119.99574 * 331.95172 * 19 18 17 22 22 N 1.30630 * 120.00526 * 349.34682 * 21 19 18 23 23 Si 1.86810 * 119.99756 * 169.35343 * 21 19 18 24 24 H 1.48500 * 109.47064 * 59.99593 * 23 21 19 25 25 H 1.48500 * 109.46955 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46961 * 299.99629 * 23 21 19 27 27 C 1.47175 * 117.46706 * 44.52842 * 10 9 5 28 28 C 1.50623 * 117.99923 * 179.18772 * 4 3 2 29 29 H 1.08997 * 109.47950 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47326 * 119.99575 * 1 2 3 31 31 H 1.09003 * 109.47113 * 239.99140 * 1 2 3 32 32 H 1.07996 * 121.02153 * 179.28821 * 6 5 4 33 33 H 1.08999 * 109.47307 * 228.19023 * 9 5 4 34 34 H 1.08997 * 109.46894 * 108.19152 * 9 5 4 35 35 H 1.07998 * 119.96140 * 0.02562 * 14 13 11 36 36 H 1.08004 * 119.66613 * 180.21188 * 15 14 13 37 37 H 1.08009 * 119.71529 * 179.76049 * 16 15 14 38 38 H 1.07998 * 120.06533 * 179.97438 * 17 16 15 39 39 H 0.97000 * 119.99995 * 180.02562 * 22 21 19 40 40 H 1.08998 * 109.72299 * 175.66013 * 27 10 9 41 41 H 1.09005 * 109.71620 * 55.01012 * 27 10 9 42 42 H 1.08995 * 109.22943 * 280.16289 * 28 4 3 43 43 H 1.09006 * 109.21997 * 39.50643 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0889 1.1187 0.0000 4 6 3.3979 1.2060 0.0175 5 6 4.1689 0.0398 0.0470 6 6 3.5318 -1.1711 0.0337 7 6 2.1212 -1.1761 0.0055 8 8 1.5053 -2.2297 -0.0133 9 6 5.6727 0.0652 0.1029 10 7 6.1491 1.4277 -0.1639 11 6 7.1840 1.6566 -0.9964 12 8 7.4988 2.7975 -1.2759 13 6 7.9346 0.5236 -1.5681 14 6 8.3372 -0.5330 -0.7561 15 6 9.0369 -1.5953 -1.2971 16 6 9.3549 -1.6192 -2.6482 17 6 8.9752 -0.5870 -3.4750 18 6 8.2578 0.5038 -2.9503 19 6 7.8647 1.5661 -3.7881 20 1 6.9830 2.1429 -3.5511 21 6 8.6186 1.8744 -4.9301 22 7 9.7894 1.3232 -5.1084 23 14 7.9483 3.0735 -6.1961 24 1 7.7143 4.3918 -5.5539 25 1 8.9299 3.2282 -7.2996 26 1 6.6682 2.5540 -6.7407 27 6 5.4532 2.5346 0.5118 28 6 4.0153 2.5797 -0.0034 29 1 -0.3635 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3633 -0.5140 0.8899 32 1 4.0915 -2.0946 0.0440 33 1 6.0757 -0.6143 -0.6481 34 1 6.0049 -0.2487 1.0924 35 1 8.0994 -0.5247 0.2974 36 1 9.3430 -2.4131 -0.6614 37 1 9.9056 -2.4551 -3.0539 38 1 9.2273 -0.6139 -4.5248 39 1 10.3108 1.5367 -5.8979 40 1 5.9542 3.4761 0.2867 41 1 5.4528 2.3659 1.5887 42 1 4.0119 2.9593 -1.0251 43 1 3.4284 3.2465 0.6283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601264764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:36 Heat of formation + Delta-G solvation = 24.652028 kcal Electronic energy + Delta-G solvation = -29334.328613 eV Core-core repulsion = 25345.796739 eV Total energy + Delta-G solvation = -3988.531874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16673 -39.65906 -38.01685 -37.18275 -36.41621 -34.07497 -33.75335 -33.10514 -30.72303 -29.92648 -29.25365 -28.63675 -26.06419 -25.46560 -24.79963 -23.20785 -22.52040 -21.11757 -20.87320 -19.25283 -18.07582 -17.36766 -17.30435 -16.86934 -16.45184 -15.96719 -15.53515 -15.33718 -14.95274 -14.55894 -14.33474 -14.02174 -13.68802 -13.55247 -13.37437 -13.25761 -13.05051 -12.83424 -12.75078 -12.52541 -12.38198 -12.16611 -11.94194 -11.69552 -11.38406 -11.23917 -11.15586 -10.99323 -10.90043 -10.55759 -10.04586 -9.98077 -9.86195 -9.74400 -9.33181 -8.82431 -8.49049 -8.28700 -7.62172 -7.52918 -6.87523 -4.51061 0.41867 1.50843 2.15440 2.38105 2.75430 3.02511 3.06754 3.17287 3.27378 3.32359 3.77574 3.87546 3.97673 4.38132 4.43806 4.54293 4.66926 4.95279 4.99380 5.13484 5.20414 5.29743 5.37429 5.46781 5.49028 5.51669 5.60344 5.65535 5.74541 5.86307 5.97175 6.01673 6.09733 6.12896 6.27196 6.48053 6.84929 6.90432 7.03749 7.14687 7.37431 7.55306 7.59315 7.75560 7.90267 7.98035 8.07572 8.11678 8.47478 8.70467 8.77037 9.06395 10.04411 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003758 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.628984 B = 7448.674448 C = 8068.468449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.346 5.346 3 N -0.233 5.233 4 C 0.084 3.916 5 C -0.032 4.032 6 C -0.197 4.197 7 C 0.478 3.522 8 O -0.541 6.541 9 C 0.146 3.854 10 N -0.627 5.627 11 C 0.588 3.412 12 O -0.529 6.529 13 C -0.264 4.264 14 C -0.061 4.061 15 C -0.246 4.246 16 C -0.093 4.093 17 C -0.155 4.155 18 C 0.146 3.854 19 C -0.425 4.425 20 H 0.081 0.919 21 C 0.075 3.925 22 N -0.785 5.785 23 Si 0.913 3.087 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.263 1.263 27 C 0.114 3.886 28 C -0.067 4.067 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.284 0.716 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 -0.020 8.908 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.165 5.165 3 N -0.057 5.057 4 C -0.086 4.086 5 C -0.039 4.039 6 C -0.227 4.227 7 C 0.277 3.723 8 O -0.421 6.421 9 C 0.022 3.978 10 N -0.363 5.363 11 C 0.382 3.618 12 O -0.405 6.405 13 C -0.268 4.268 14 C -0.080 4.080 15 C -0.266 4.266 16 C -0.112 4.112 17 C -0.174 4.174 18 C 0.142 3.858 19 C -0.453 4.453 20 H 0.100 0.900 21 C -0.144 4.144 22 N -0.410 5.410 23 Si 0.737 3.263 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.009 4.009 28 C -0.108 4.108 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.205 0.496 8.529 14.898 hybrid contribution 0.361 -0.232 -0.530 0.681 sum -11.844 0.264 7.999 14.295 Atomic orbital electron populations 1.22081 0.74325 1.04774 1.04205 1.46533 1.09422 1.02831 1.57751 1.70904 1.11852 1.11995 1.10976 1.21522 0.87175 0.96974 1.02886 1.21149 0.98713 0.92678 0.91321 1.22598 0.92924 0.99740 1.07429 1.17956 0.89749 0.84012 0.80535 1.90967 1.69585 1.29091 1.52451 1.20699 0.87000 0.86618 1.03500 1.48172 1.34254 1.05619 1.48297 1.18532 0.78053 0.89667 0.75540 1.90703 1.67442 1.23779 1.58545 1.19334 1.15033 0.97581 0.94887 1.20623 0.97619 0.93055 0.96719 1.20283 1.10393 1.00348 0.95549 1.20823 0.98841 0.97657 0.93904 1.21454 1.02943 0.93028 0.99966 1.17384 0.87866 0.91469 0.89049 1.19635 1.09602 1.11647 1.04398 0.90041 1.26002 0.93919 0.96356 0.98137 1.69683 1.08779 1.36290 1.26242 0.86259 0.79635 0.81139 0.79223 1.18546 1.20130 1.18755 1.21470 0.90320 0.93052 0.96071 1.20595 0.95875 0.90005 1.04275 0.88386 0.89751 0.89834 0.81608 0.85921 0.89413 0.88908 0.89042 0.89092 0.85687 0.90440 0.87628 0.91258 0.88895 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.23 59.85 0.61 1.39 16 2 N -0.35 -4.43 3.61 -70.17 -0.25 -4.68 16 3 N -0.23 -2.96 10.69 33.70 0.36 -2.60 16 4 C 0.08 1.08 6.73 -82.31 -0.55 0.53 16 5 C -0.03 -0.42 5.81 -104.63 -0.61 -1.03 16 6 C -0.20 -2.62 9.75 -39.01 -0.38 -3.00 16 7 C 0.48 7.05 7.48 -15.22 -0.11 6.94 16 8 O -0.54 -9.31 17.11 4.86 0.08 -9.22 16 9 C 0.15 1.98 4.78 -5.13 -0.02 1.95 16 10 N -0.63 -10.06 2.94 -175.78 -0.52 -10.57 16 11 C 0.59 12.49 6.64 -12.51 -0.08 12.41 16 12 O -0.53 -12.96 15.06 5.27 0.08 -12.88 16 13 C -0.26 -5.97 4.93 -104.37 -0.51 -6.49 16 14 C -0.06 -1.22 7.66 -39.22 -0.30 -1.52 16 15 C -0.25 -4.93 10.03 -39.37 -0.39 -5.32 16 16 C -0.09 -2.02 10.01 -39.60 -0.40 -2.41 16 17 C -0.15 -3.77 8.66 -38.89 -0.34 -4.10 16 18 C 0.15 3.71 5.58 -106.54 -0.59 3.11 16 19 C -0.42 -11.08 7.87 -37.82 -0.30 -11.38 16 20 H 0.08 2.16 6.89 -52.49 -0.36 1.80 16 21 C 0.08 1.86 5.26 -17.30 -0.09 1.76 16 22 N -0.79 -19.64 10.78 55.56 0.60 -19.04 16 23 Si 0.91 18.77 29.58 -169.99 -5.03 13.74 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 C 0.11 1.45 6.40 -3.77 -0.02 1.42 16 28 C -0.07 -0.77 6.12 -28.02 -0.17 -0.94 16 29 H 0.10 0.66 8.05 -51.93 -0.42 0.25 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.12 1.86 5.61 -51.93 -0.29 1.57 16 34 H 0.09 0.97 7.97 -51.93 -0.41 0.56 16 35 H 0.09 1.55 7.01 -52.49 -0.37 1.18 16 36 H 0.09 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.13 3.14 6.16 -52.49 -0.32 2.82 16 39 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 40 H 0.11 1.45 7.09 -51.93 -0.37 1.08 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -31.56 356.99 -8.63 -40.19 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.06 Total: 6.38 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -4.27 Total: -6.67 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.19 Total: -36.90 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.16 Total: -22.11 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.56 -8.63 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601264764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.838 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds