Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28093 * 119.15128 * 2 1 4 4 C 1.31198 * 122.96240 * 179.08912 * 3 2 1 5 5 C 1.39828 * 119.66395 * 359.53739 * 4 3 2 6 6 C 1.36834 * 118.75710 * 1.11309 * 5 4 3 7 7 C 1.34679 * 119.15937 * 179.73293 * 2 1 3 8 8 O 1.22059 * 120.52510 * 1.29010 * 7 2 1 9 9 C 1.50512 * 122.52277 * 181.55895 * 5 4 3 10 10 N 1.46782 * 109.46149 * 348.19258 * 9 5 4 11 11 C 1.34780 * 121.27053 * 224.55397 * 10 9 5 12 12 O 1.21610 * 120.00026 * 174.73837 * 11 10 9 13 13 C 1.47436 * 119.99554 * 354.73894 * 11 10 9 14 14 C 1.39213 * 120.28180 * 313.96110 * 13 11 10 15 15 C 1.38229 * 120.09161 * 179.79034 * 14 13 11 16 16 C 1.38825 * 120.67110 * 0.47177 * 15 14 13 17 17 C 1.37592 * 120.57506 * 359.78621 * 16 15 14 18 18 C 1.40705 * 119.88197 * 359.97438 * 17 16 15 19 19 C 1.40891 * 120.33151 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99539 * 151.94809 * 19 18 17 21 21 C 1.40264 * 119.99574 * 331.95172 * 19 18 17 22 22 N 1.30630 * 120.00526 * 349.34682 * 21 19 18 23 23 Si 1.86810 * 119.99756 * 169.35343 * 21 19 18 24 24 H 1.48500 * 109.47064 * 59.99593 * 23 21 19 25 25 H 1.48500 * 109.46955 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46961 * 299.99629 * 23 21 19 27 27 C 1.47175 * 117.46706 * 44.52842 * 10 9 5 28 28 C 1.50623 * 117.99923 * 179.18772 * 4 3 2 29 29 H 1.08997 * 109.47950 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47326 * 119.99575 * 1 2 3 31 31 H 1.09003 * 109.47113 * 239.99140 * 1 2 3 32 32 H 1.07996 * 121.02153 * 179.28821 * 6 5 4 33 33 H 1.08999 * 109.47307 * 228.19023 * 9 5 4 34 34 H 1.08997 * 109.46894 * 108.19152 * 9 5 4 35 35 H 1.07998 * 119.96140 * 0.02562 * 14 13 11 36 36 H 1.08004 * 119.66613 * 180.21188 * 15 14 13 37 37 H 1.08009 * 119.71529 * 179.76049 * 16 15 14 38 38 H 1.07998 * 120.06533 * 179.97438 * 17 16 15 39 39 H 0.97000 * 119.99995 * 180.02562 * 22 21 19 40 40 H 1.08998 * 109.72299 * 175.66013 * 27 10 9 41 41 H 1.09005 * 109.71620 * 55.01012 * 27 10 9 42 42 H 1.08995 * 109.22943 * 280.16289 * 28 4 3 43 43 H 1.09006 * 109.21997 * 39.50643 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0889 1.1187 0.0000 4 6 3.3979 1.2060 0.0175 5 6 4.1689 0.0398 0.0470 6 6 3.5318 -1.1711 0.0337 7 6 2.1212 -1.1761 0.0055 8 8 1.5053 -2.2297 -0.0133 9 6 5.6727 0.0652 0.1029 10 7 6.1491 1.4277 -0.1639 11 6 7.1840 1.6566 -0.9964 12 8 7.4988 2.7975 -1.2759 13 6 7.9346 0.5236 -1.5681 14 6 8.3372 -0.5330 -0.7561 15 6 9.0369 -1.5953 -1.2971 16 6 9.3549 -1.6192 -2.6482 17 6 8.9752 -0.5870 -3.4750 18 6 8.2578 0.5038 -2.9503 19 6 7.8647 1.5661 -3.7881 20 1 6.9830 2.1429 -3.5511 21 6 8.6186 1.8744 -4.9301 22 7 9.7894 1.3232 -5.1084 23 14 7.9483 3.0735 -6.1961 24 1 7.7143 4.3918 -5.5539 25 1 8.9299 3.2282 -7.2996 26 1 6.6682 2.5540 -6.7407 27 6 5.4532 2.5346 0.5118 28 6 4.0153 2.5797 -0.0034 29 1 -0.3635 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3633 -0.5140 0.8899 32 1 4.0915 -2.0946 0.0440 33 1 6.0757 -0.6143 -0.6481 34 1 6.0049 -0.2487 1.0924 35 1 8.0994 -0.5247 0.2974 36 1 9.3430 -2.4131 -0.6614 37 1 9.9056 -2.4551 -3.0539 38 1 9.2273 -0.6139 -4.5248 39 1 10.3108 1.5367 -5.8979 40 1 5.9542 3.4761 0.2867 41 1 5.4528 2.3659 1.5887 42 1 4.0119 2.9593 -1.0251 43 1 3.4284 3.2465 0.6283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601264764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = 5.493726 kcal Electronic energy + Delta-G solvation = -29335.159379 eV Core-core repulsion = 25345.796739 eV Total energy + Delta-G solvation = -3989.362640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.20726 -41.10070 -39.29798 -38.64986 -37.81027 -35.66723 -35.10121 -34.20354 -32.11143 -31.59568 -30.64863 -29.69185 -27.50607 -26.83016 -25.92623 -24.37617 -23.85968 -22.75747 -22.25222 -20.54552 -19.44019 -18.99014 -18.37312 -17.95595 -17.76097 -17.32090 -17.02228 -16.79482 -16.17540 -16.05922 -15.52215 -15.42981 -15.00539 -14.82684 -14.48780 -14.41875 -14.37643 -14.24450 -14.03095 -13.63007 -13.53932 -13.48252 -13.36941 -13.00758 -12.93883 -12.80645 -12.62445 -12.37176 -12.22166 -12.07010 -11.79436 -11.47941 -11.13346 -11.02013 -10.95060 -10.47630 -9.71619 -9.45122 -9.32766 -9.28052 -8.66292 -6.38439 -0.61485 0.42859 0.66144 1.04824 1.22109 1.32979 1.43567 1.51019 1.96465 2.17637 2.21656 2.24131 2.74281 2.95761 3.30196 3.44550 3.62562 3.70499 4.03655 4.18493 4.23905 4.28171 4.30790 4.37608 4.45996 4.53724 4.56680 4.58650 4.63644 4.64374 4.75566 4.85055 4.88369 5.00198 5.03152 5.09972 5.14914 5.27617 5.38079 5.58873 5.65979 5.89275 6.03464 6.15304 6.29551 6.45673 6.49128 6.67512 6.88770 6.97105 7.04711 7.48197 8.27729 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003758 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.628984 B = 7448.674448 C = 8068.468449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.344 5.344 3 N -0.228 5.228 4 C 0.076 3.924 5 C -0.029 4.029 6 C -0.200 4.200 7 C 0.466 3.534 8 O -0.575 6.575 9 C 0.146 3.854 10 N -0.619 5.619 11 C 0.586 3.414 12 O -0.574 6.574 13 C -0.273 4.273 14 C -0.055 4.055 15 C -0.236 4.236 16 C -0.094 4.094 17 C -0.185 4.185 18 C 0.115 3.885 19 C -0.463 4.463 20 H 0.061 0.939 21 C 0.037 3.963 22 N -0.817 5.817 23 Si 0.973 3.027 24 H -0.270 1.270 25 H -0.260 1.260 26 H -0.258 1.258 27 C 0.111 3.889 28 C -0.060 4.060 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.179 0.821 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.290 0.710 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 -0.549 11.186 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.163 5.163 3 N -0.053 5.053 4 C -0.093 4.093 5 C -0.036 4.036 6 C -0.230 4.230 7 C 0.267 3.733 8 O -0.458 6.458 9 C 0.023 3.977 10 N -0.353 5.353 11 C 0.378 3.622 12 O -0.454 6.454 13 C -0.278 4.278 14 C -0.073 4.073 15 C -0.254 4.254 16 C -0.112 4.112 17 C -0.205 4.205 18 C 0.111 3.889 19 C -0.492 4.492 20 H 0.080 0.920 21 C -0.179 4.179 22 N -0.443 5.443 23 Si 0.794 3.206 24 H -0.195 1.195 25 H -0.184 1.184 26 H -0.183 1.183 27 C -0.011 4.011 28 C -0.100 4.100 29 H 0.140 0.860 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.185 -0.043 10.840 17.069 hybrid contribution 0.591 -0.171 -1.031 1.201 sum -12.595 -0.214 9.809 15.965 Atomic orbital electron populations 1.22390 0.72266 1.06605 1.04859 1.46797 1.10782 1.02352 1.56361 1.70981 1.11774 1.11641 1.10866 1.21743 0.87411 0.97407 1.02769 1.21081 0.98365 0.92753 0.91385 1.22722 0.92603 1.00434 1.07254 1.18194 0.90306 0.84162 0.80600 1.90946 1.70241 1.30161 1.54423 1.20856 0.87167 0.84755 1.04953 1.48042 1.32729 1.07787 1.46713 1.18397 0.79138 0.88540 0.76079 1.90673 1.69179 1.25121 1.60398 1.19699 1.14838 0.98811 0.94436 1.21007 0.96244 0.91775 0.98302 1.20767 1.08451 1.01093 0.95139 1.21158 0.98107 0.97322 0.94660 1.21391 1.04970 0.94340 0.99751 1.17734 0.88827 0.91714 0.90586 1.19638 1.10168 1.12957 1.06477 0.92040 1.26677 0.93980 0.97819 0.99428 1.69725 1.09588 1.37905 1.27097 0.85384 0.79455 0.78449 0.77275 1.19454 1.18352 1.18264 1.21742 0.90218 0.91344 0.97772 1.20561 0.95467 0.89949 1.04026 0.85979 0.89565 0.88765 0.80332 0.87451 0.85593 0.84928 0.85153 0.86746 0.87636 0.89927 0.88985 0.87481 0.90561 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.23 127.77 1.31 2.55 16 2 N -0.34 -8.16 3.61 -494.05 -1.79 -9.95 16 3 N -0.23 -5.26 10.69 -47.30 -0.51 -5.77 16 4 C 0.08 1.77 6.73 43.01 0.29 2.06 16 5 C -0.03 -0.69 5.81 -19.87 -0.12 -0.81 16 6 C -0.20 -4.96 9.75 22.64 0.22 -4.74 16 7 C 0.47 13.14 7.48 84.96 0.64 13.78 16 8 O -0.57 -19.36 17.11 -5.51 -0.09 -19.45 16 9 C 0.15 3.53 4.78 85.52 0.41 3.94 16 10 N -0.62 -18.79 2.94 -828.29 -2.43 -21.22 16 11 C 0.59 24.92 6.64 86.67 0.58 25.49 16 12 O -0.57 -29.06 15.06 -4.06 -0.06 -29.12 16 13 C -0.27 -12.38 4.93 -19.70 -0.10 -12.47 16 14 C -0.05 -2.03 7.66 22.50 0.17 -1.86 16 15 C -0.24 -8.67 10.03 22.41 0.22 -8.44 16 16 C -0.09 -3.94 10.01 22.26 0.22 -3.72 16 17 C -0.19 -9.28 8.66 22.72 0.20 -9.08 16 18 C 0.11 6.04 5.58 -21.11 -0.12 5.92 16 19 C -0.46 -25.58 7.87 23.41 0.18 -25.39 16 20 H 0.06 3.49 6.89 -2.91 -0.02 3.47 16 21 C 0.04 1.89 5.26 85.36 0.45 2.34 16 22 N -0.82 -42.82 10.78 21.88 0.24 -42.59 16 23 Si 0.97 40.15 29.58 68.60 2.03 42.17 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 27 C 0.11 2.56 6.40 86.19 0.55 3.12 16 28 C -0.06 -1.24 6.12 29.76 0.18 -1.06 16 29 H 0.12 1.33 8.05 -2.39 -0.02 1.31 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.11 3.02 5.61 -2.39 -0.01 3.01 16 34 H 0.13 2.16 7.97 -2.39 -0.02 2.15 16 35 H 0.13 3.81 7.01 -2.91 -0.02 3.79 16 36 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 37 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.11 5.60 6.16 -2.91 -0.02 5.58 16 39 H 0.29 13.75 8.29 -92.71 -0.77 12.98 16 40 H 0.09 2.44 7.09 -2.39 -0.02 2.42 16 41 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -72.94 356.99 3.73 -69.20 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 1.06 Total: 25.09 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.29 Total: -8.38 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -4.49 Total: -79.52 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.16 Total: -48.57 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Total: -72.94 3.73 -69.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601264764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.696 kcal (2) G-P(sol) polarization free energy of solvation -72.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds