Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99663 * 2 1 4 4 C 1.53246 * 109.33986 * 172.74640 * 3 2 1 5 5 N 1.47147 * 108.67134 * 53.71668 * 4 3 2 6 6 S 1.65604 * 120.92315 * 128.91824 * 5 4 3 7 7 O 1.42097 * 106.39972 * 217.48009 * 6 5 4 8 8 O 1.42100 * 106.39947 * 350.39918 * 6 5 4 9 9 C 1.76201 * 107.21583 * 103.93718 * 6 5 4 10 10 C 1.37641 * 120.12284 * 115.45239 * 9 6 5 11 11 C 1.38613 * 120.24574 * 179.97438 * 10 9 6 12 12 C 1.38660 * 120.50222 * 0.02562 * 11 10 9 13 13 C 1.37597 * 120.24606 * 0.03030 * 12 11 10 14 14 C 1.40693 * 120.13174 * 295.18097 * 9 6 5 15 15 C 1.41402 * 120.24122 * 359.97438 * 14 9 6 16 16 H 1.08003 * 119.99756 * 325.83368 * 15 14 9 17 17 C 1.39945 * 119.99986 * 145.84179 * 15 14 9 18 18 N 1.30822 * 119.99962 * 358.36270 * 17 15 14 19 19 Si 1.86802 * 120.00098 * 178.36804 * 17 15 14 20 20 H 1.48500 * 109.46959 * 89.99446 * 19 17 15 21 21 H 1.48493 * 109.47063 * 209.99495 * 19 17 15 22 22 H 1.48504 * 109.46857 * 330.00224 * 19 17 15 23 23 C 1.47080 * 118.19632 * 309.16085 * 5 4 3 24 24 H 1.09000 * 109.62393 * 291.03900 * 23 5 4 25 25 C 1.52995 * 109.62976 * 170.65467 * 23 5 4 26 26 N 1.46901 * 109.47134 * 173.94006 * 25 23 5 27 27 C 1.46896 * 111.00292 * 235.69720 * 2 1 3 28 28 H 1.09006 * 109.46917 * 184.30079 * 1 2 3 29 29 H 1.08996 * 109.47305 * 304.30002 * 1 2 3 30 30 H 1.08991 * 109.47399 * 64.30346 * 1 2 3 31 31 H 1.08997 * 109.49472 * 292.70426 * 3 2 1 32 32 H 1.08996 * 109.49653 * 52.76266 * 3 2 1 33 33 H 1.08999 * 109.62976 * 173.53985 * 4 3 2 34 34 H 1.09000 * 109.62742 * 294.12108 * 4 3 2 35 35 H 1.07995 * 119.87764 * 0.02562 * 10 9 6 36 36 H 1.07994 * 119.74796 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.87628 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.12424 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00071 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.47075 * 293.94141 * 25 23 5 41 41 H 1.08995 * 109.47646 * 53.93406 * 25 23 5 42 42 H 1.00904 * 110.99887 * 184.71736 * 26 25 23 43 43 H 1.00898 * 111.00316 * 308.67402 * 26 25 23 44 44 H 1.09004 * 109.49172 * 67.28824 * 27 2 1 45 45 H 1.08999 * 109.51808 * 307.22648 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.5163 1.3313 0.1826 5 7 4.0905 0.4443 -0.8415 6 16 5.3449 0.9486 -1.7978 7 8 5.1085 0.4052 -3.0893 8 8 5.4990 2.3404 -1.5565 9 6 6.8068 0.1737 -1.1919 10 6 7.4862 -0.7296 -1.9774 11 6 8.6368 -1.3402 -1.5035 12 6 9.1163 -1.0500 -0.2352 13 6 8.4527 -0.1510 0.5678 14 6 7.2873 0.4802 0.0944 15 6 6.6011 1.4113 0.9079 16 1 6.1041 2.2580 0.4580 17 6 6.5663 1.2356 2.2958 18 7 7.1411 0.1930 2.8379 19 14 5.6987 2.4899 3.3745 20 1 4.2750 2.1010 3.5389 21 1 6.3558 2.5371 4.7053 22 1 5.7755 3.8288 2.7366 23 6 3.5164 -0.9009 -0.9968 24 1 3.7561 -1.5045 -0.1214 25 6 4.0907 -1.5633 -2.2506 26 7 3.6286 -2.9558 -2.3242 27 6 1.9955 -0.7729 -1.1328 28 1 -0.3633 -1.0248 0.0771 29 1 -0.3634 0.5791 0.8489 30 1 -0.3634 0.4456 -0.9259 31 1 1.7554 1.8532 -0.9479 32 1 1.5452 1.9339 0.8180 33 1 3.9254 2.3352 0.0690 34 1 3.7561 0.9451 1.1733 35 1 7.1219 -0.9628 -2.9670 36 1 9.1637 -2.0474 -2.1268 37 1 10.0135 -1.5320 0.1240 38 1 8.8277 0.0732 1.5555 39 1 7.1173 0.0714 3.7999 40 1 3.7538 -1.0215 -3.1345 41 1 5.1795 -1.5436 -2.2057 42 1 4.0552 -3.4377 -3.1013 43 1 3.8041 -3.4413 -1.4573 44 1 1.7554 -0.2613 -2.0650 45 1 1.5458 -1.7657 -1.1367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601338110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -31.793179 kcal Electronic energy + Delta-G solvation = -30069.709116 eV Core-core repulsion = 26214.173545 eV Total energy + Delta-G solvation = -3855.535570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.92005 -37.65123 -36.75730 -35.13689 -34.88741 -33.92926 -33.45261 -30.30720 -30.26681 -29.62481 -27.72471 -25.59162 -25.12154 -23.58106 -21.72785 -21.54961 -21.18526 -20.31611 -18.16573 -17.72295 -16.87608 -16.25165 -15.83084 -15.49336 -15.27995 -14.88924 -14.70906 -14.42909 -14.39152 -14.05531 -14.00649 -13.62122 -13.33335 -13.12190 -12.77413 -12.55782 -12.11472 -12.10620 -11.95514 -11.71176 -11.62440 -11.42449 -11.28343 -11.22342 -11.18407 -11.03305 -10.76833 -10.69445 -10.56680 -10.48638 -10.01806 -9.94631 -9.51147 -9.27127 -8.56431 -8.47210 -8.10273 -7.99132 -7.57922 -7.00087 -4.82404 1.42278 2.27841 2.68506 2.95543 3.01687 3.05632 3.69706 3.76449 4.07406 4.38628 4.66542 4.74094 5.09357 5.13699 5.14954 5.29049 5.36100 5.45914 5.48011 5.62464 5.67610 5.78157 5.87918 5.92951 5.95251 6.01110 6.05138 6.17056 6.21965 6.32966 6.44696 6.50050 6.62069 6.76807 6.94280 7.00470 7.15588 7.20877 7.22182 7.28738 7.34410 7.45600 7.63400 7.68904 7.75269 7.90635 8.33073 8.52107 8.61917 9.91559 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009847 B = 0.007393 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.724974 B = 3786.616411 C = 5390.559913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.543 5.543 3 C 0.041 3.959 4 C 0.130 3.870 5 N -0.988 5.988 6 S 2.703 3.297 7 O -0.994 6.994 8 O -0.975 6.975 9 C -0.771 4.771 10 C -0.010 4.010 11 C -0.243 4.243 12 C -0.080 4.080 13 C -0.150 4.150 14 C 0.192 3.808 15 C -0.475 4.475 16 H 0.111 0.889 17 C 0.081 3.919 18 N -0.786 5.786 19 Si 0.904 3.096 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.252 1.252 23 C 0.168 3.832 24 H 0.077 0.923 25 C 0.029 3.971 26 N -0.845 5.845 27 C 0.061 3.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.285 0.715 40 H 0.110 0.890 41 H 0.048 0.952 42 H 0.344 0.656 43 H 0.337 0.663 44 H 0.036 0.964 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 -2.418 -1.513 8.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.267 5.267 3 C -0.088 4.088 4 C 0.004 3.996 5 N -0.825 5.825 6 S 2.803 3.197 7 O -0.985 6.985 8 O -0.966 6.966 9 C -0.866 4.866 10 C -0.030 4.030 11 C -0.264 4.264 12 C -0.099 4.099 13 C -0.170 4.170 14 C 0.188 3.812 15 C -0.504 4.504 16 H 0.129 0.871 17 C -0.139 4.139 18 N -0.410 5.410 19 Si 0.727 3.273 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.176 1.176 23 C 0.061 3.939 24 H 0.095 0.905 25 C -0.103 4.103 26 N -0.375 5.375 27 C -0.068 4.068 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.066 0.934 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.054 0.946 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.990 -1.804 -1.676 9.321 hybrid contribution 1.005 -0.037 0.614 1.179 sum -7.984 -1.841 -1.061 8.262 Atomic orbital electron populations 1.22329 0.87627 1.02008 1.00093 1.61858 1.07171 1.13756 1.43923 1.22550 0.96376 0.89301 1.00620 1.21547 0.90863 0.94732 0.92414 1.57603 1.49999 1.22235 1.52649 1.01017 0.73147 0.73217 0.72270 1.93467 1.85619 1.80205 1.39168 1.93448 1.86307 1.31211 1.85632 1.29911 1.23805 1.22990 1.09891 1.20215 0.93927 0.92341 0.96485 1.20516 1.00975 1.07197 0.97671 1.20948 0.97927 0.96907 0.94139 1.21652 0.95726 0.99537 1.00100 1.17048 0.88675 0.87851 0.87643 1.20399 1.29097 1.09212 0.91658 0.87113 1.25958 0.93923 0.95345 0.98651 1.69752 1.32847 1.24726 1.13719 0.86344 0.80381 0.81698 0.78920 1.18262 1.19894 1.17574 1.20864 0.92259 0.82962 0.97833 0.90496 1.22817 0.98560 0.89983 0.98899 1.58806 1.66400 1.03249 1.09037 1.22381 0.94838 0.98598 0.90989 0.91463 0.91613 0.95992 0.94665 0.89962 0.88301 0.90261 0.87574 0.88755 0.88784 0.85384 0.90351 0.87227 0.93416 0.84423 0.85155 0.94614 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.58 60.06 0.58 0.89 16 2 N -0.54 -7.83 4.88 -242.62 -1.18 -9.02 16 3 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 4 C 0.13 2.33 5.33 -3.56 -0.02 2.31 16 5 N -0.99 -18.78 3.25 -106.15 -0.35 -19.13 16 6 S 2.70 58.78 4.53 -107.50 -0.49 58.30 16 7 O -0.99 -21.51 12.56 -57.17 -0.72 -22.23 16 8 O -0.98 -23.36 14.11 -57.17 -0.81 -24.17 16 9 C -0.77 -18.10 5.54 -38.87 -0.22 -18.32 16 10 C -0.01 -0.22 8.26 -39.66 -0.33 -0.54 16 11 C -0.24 -5.20 10.05 -39.29 -0.39 -5.59 16 12 C -0.08 -1.77 10.02 -39.66 -0.40 -2.17 16 13 C -0.15 -3.67 8.64 -38.88 -0.34 -4.01 16 14 C 0.19 4.82 5.53 -106.83 -0.59 4.23 16 15 C -0.47 -11.61 7.03 -37.74 -0.27 -11.88 16 16 H 0.11 2.73 4.75 -52.48 -0.25 2.48 16 17 C 0.08 1.86 5.37 -17.34 -0.09 1.77 16 18 N -0.79 -18.44 10.76 55.55 0.60 -17.84 16 19 Si 0.90 17.34 29.56 -169.99 -5.02 12.32 16 20 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.25 -4.87 7.11 56.52 0.40 -4.47 16 23 C 0.17 2.85 3.23 -67.49 -0.22 2.63 16 24 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 25 C 0.03 0.48 4.58 -3.83 -0.02 0.47 16 26 N -0.84 -11.20 9.32 -10.37 -0.10 -11.29 16 27 C 0.06 0.91 4.75 -3.70 -0.02 0.89 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.10 1.81 6.19 -51.93 -0.32 1.49 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.11 2.16 6.98 -52.49 -0.37 1.79 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.13 3.18 6.29 -52.48 -0.33 2.84 16 39 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 40 H 0.11 1.97 6.45 -51.93 -0.34 1.63 16 41 H 0.05 0.88 4.42 -51.93 -0.23 0.65 16 42 H 0.34 4.02 9.08 -39.29 -0.36 3.66 16 43 H 0.34 4.15 8.90 -39.29 -0.35 3.80 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.23 7.96 -51.93 -0.41 0.82 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -27.79 354.23 -11.37 -39.16 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -6.30 Total: 17.30 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -2.34 Total: -28.73 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -1.03 Total: -57.28 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.53 Total: -46.40 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.02 Total: 12.32 kcal Atomic # 16 Polarization: 58.78 SS G_CDS: -0.49 Total: 58.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.79 -11.37 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601338110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.362 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds