Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00035 * 2 1 4 4 C 1.52775 * 109.42455 * 187.11539 * 3 2 1 5 5 N 1.47087 * 108.76829 * 306.42419 * 4 3 2 6 6 S 1.65590 * 120.88379 * 231.12725 * 5 4 3 7 7 O 1.42103 * 106.40222 * 354.73373 * 6 5 4 8 8 O 1.42108 * 106.40285 * 221.81712 * 6 5 4 9 9 C 1.76196 * 107.22220 * 108.27408 * 6 5 4 10 10 C 1.37644 * 120.12567 * 113.54572 * 9 6 5 11 11 C 1.38620 * 120.24564 * 180.32314 * 10 9 6 12 12 C 1.38661 * 120.50041 * 359.67275 * 11 10 9 13 13 C 1.37599 * 120.24871 * 0.02562 * 12 11 10 14 14 C 1.40691 * 120.13214 * 293.24605 * 9 6 5 15 15 C 1.41406 * 120.24022 * 359.97259 * 14 9 6 16 16 H 1.07991 * 119.99767 * 331.14824 * 15 14 9 17 17 C 1.39941 * 119.99810 * 151.14987 * 15 14 9 18 18 N 1.30823 * 120.00438 * 347.72687 * 17 15 14 19 19 Si 1.86804 * 119.99949 * 167.72585 * 17 15 14 20 20 H 1.48504 * 109.46960 * 274.85939 * 19 17 15 21 21 H 1.48494 * 109.46891 * 34.85812 * 19 17 15 22 22 H 1.48498 * 109.46871 * 154.85919 * 19 17 15 23 23 C 1.47085 * 118.23117 * 50.84805 * 5 4 3 24 24 H 1.08996 * 109.62593 * 68.99765 * 23 5 4 25 25 C 1.53005 * 109.62529 * 189.38246 * 23 5 4 26 26 N 1.46895 * 109.47114 * 180.39473 * 25 23 5 27 27 C 1.46898 * 110.99958 * 124.30158 * 2 1 3 28 28 H 1.08999 * 109.47420 * 295.69728 * 1 2 3 29 29 H 1.08998 * 109.47334 * 55.69871 * 1 2 3 30 30 H 1.09002 * 109.47369 * 175.69815 * 1 2 3 31 31 H 1.09000 * 109.49132 * 307.21440 * 3 2 1 32 32 H 1.08998 * 109.49149 * 67.29197 * 3 2 1 33 33 H 1.09000 * 109.55770 * 186.61035 * 4 3 2 34 34 H 1.09003 * 109.46162 * 66.17838 * 4 3 2 35 35 H 1.07994 * 119.88090 * 0.02562 * 10 9 6 36 36 H 1.07998 * 119.74700 * 179.69192 * 11 10 9 37 37 H 1.07996 * 119.87392 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.12460 * 180.02562 * 13 12 11 39 39 H 0.96996 * 120.00670 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46547 * 300.39357 * 25 23 5 41 41 H 1.08998 * 109.47185 * 60.39046 * 25 23 5 42 42 H 1.00897 * 111.00100 * 61.41485 * 26 25 23 43 43 H 1.00897 * 111.00155 * 185.37229 * 26 25 23 44 44 H 1.09003 * 109.49054 * 52.79046 * 27 2 1 45 45 H 1.08995 * 109.51239 * 292.71621 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5122 1.3334 -0.1785 5 7 4.0869 0.4460 0.8442 6 16 5.3384 0.9526 1.8029 7 8 5.7192 2.2343 1.3217 8 8 6.2402 -0.1417 1.8970 9 6 4.6880 1.2018 3.4213 10 6 5.0911 0.3936 4.4599 11 6 4.5760 0.5832 5.7328 12 6 3.6555 1.5912 5.9765 13 6 3.2429 2.4150 4.9546 14 6 3.7593 2.2317 3.6583 15 6 3.3430 3.0727 2.6005 16 1 4.0078 3.2675 1.7720 17 6 2.0696 3.6524 2.6271 18 7 1.1797 3.2371 3.4915 19 14 1.6404 5.0194 1.4285 20 1 2.0862 6.3226 1.9836 21 1 2.3229 4.7738 0.1327 22 1 0.1709 5.0483 1.2163 23 6 3.5163 -0.9010 0.9967 24 1 3.7590 -1.5028 0.1209 25 6 4.0906 -1.5634 2.2507 26 7 3.5257 -2.9117 2.3946 27 6 1.9954 -0.7729 1.1329 28 1 -0.3634 0.4456 0.9260 29 1 -0.3634 0.5791 -0.8489 30 1 -0.3634 -1.0248 -0.0771 31 1 1.5456 1.9337 -0.8183 32 1 1.7554 1.8531 0.9479 33 1 3.9187 2.3380 -0.0617 34 1 3.7517 0.9515 -1.1709 35 1 5.8079 -0.3943 4.2816 36 1 4.8942 -0.0589 6.5408 37 1 3.2610 1.7301 6.9722 38 1 2.5262 3.1997 5.1468 39 1 0.2970 3.6387 3.5097 40 1 5.1749 -1.6312 2.1615 41 1 3.8347 -0.9669 3.1263 42 1 3.7688 -3.4917 1.6056 43 1 3.8211 -3.3370 3.2606 44 1 1.5456 -1.7657 1.1361 45 1 1.7555 -0.2617 2.0652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601338111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -31.230309 kcal Electronic energy + Delta-G solvation = -30722.923506 eV Core-core repulsion = 26867.412343 eV Total energy + Delta-G solvation = -3855.511162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.78370 -37.64660 -36.72671 -35.03384 -34.85547 -34.01943 -33.41629 -30.30729 -30.19047 -29.66420 -27.53317 -25.58882 -25.04983 -23.43310 -21.77111 -21.47491 -21.15683 -20.00901 -18.08749 -17.80346 -17.00855 -16.11059 -15.81432 -15.48523 -15.19922 -14.75582 -14.57356 -14.45894 -14.26325 -13.98003 -13.96640 -13.53344 -13.34739 -13.12552 -12.80243 -12.32669 -12.15069 -11.91780 -11.78525 -11.66507 -11.45910 -11.41485 -11.35012 -11.24476 -11.16207 -11.04959 -10.65080 -10.59348 -10.52994 -10.43204 -10.14135 -9.95363 -9.50184 -9.27459 -8.49578 -8.27971 -8.02630 -7.81350 -7.65367 -7.12146 -4.83912 1.43603 2.27363 2.65131 2.90104 2.94289 3.03553 3.68447 3.70694 4.30837 4.33368 4.62870 4.82654 5.19723 5.21239 5.36561 5.38446 5.52077 5.56919 5.75728 5.80801 5.90135 5.92787 5.97690 6.10763 6.14770 6.16493 6.20659 6.24364 6.32258 6.39328 6.50975 6.57592 6.68985 6.74453 6.90236 7.00429 7.18998 7.27401 7.35618 7.44917 7.46342 7.46624 7.63316 7.66607 7.74942 7.88881 8.30157 8.44968 8.59452 9.80079 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.008279 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.594827 B = 3381.065066 C = 4444.628993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.543 5.543 3 C 0.029 3.971 4 C 0.134 3.866 5 N -0.990 5.990 6 S 2.703 3.297 7 O -0.974 6.974 8 O -0.995 6.995 9 C -0.777 4.777 10 C -0.005 4.005 11 C -0.246 4.246 12 C -0.078 4.078 13 C -0.155 4.155 14 C 0.193 3.807 15 C -0.469 4.469 16 H 0.114 0.886 17 C 0.083 3.917 18 N -0.776 5.776 19 Si 0.897 3.103 20 H -0.261 1.261 21 H -0.249 1.249 22 H -0.273 1.273 23 C 0.178 3.822 24 H 0.072 0.928 25 C -0.016 4.016 26 N -0.838 5.838 27 C 0.059 3.941 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.286 0.714 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.336 0.664 43 H 0.344 0.656 44 H 0.084 0.916 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -5.183 -4.269 7.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C -0.100 4.100 4 C 0.008 3.992 5 N -0.827 5.827 6 S 2.803 3.197 7 O -0.965 6.965 8 O -0.986 6.986 9 C -0.872 4.872 10 C -0.025 4.025 11 C -0.266 4.266 12 C -0.097 4.097 13 C -0.174 4.174 14 C 0.189 3.811 15 C -0.497 4.497 16 H 0.131 0.869 17 C -0.138 4.138 18 N -0.399 5.399 19 Si 0.720 3.280 20 H -0.186 1.186 21 H -0.172 1.172 22 H -0.198 1.198 23 C 0.071 3.929 24 H 0.090 0.910 25 C -0.147 4.147 26 N -0.368 5.368 27 C -0.070 4.070 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.141 0.859 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.102 0.898 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.100 -4.870 -4.983 7.278 hybrid contribution -0.398 0.718 1.057 1.339 sum -2.498 -4.152 -3.926 6.237 Atomic orbital electron populations 1.22285 0.88016 1.01466 1.00275 1.61953 1.07033 1.13993 1.43728 1.22548 0.95403 0.89509 1.02577 1.21319 0.92921 0.94632 0.90281 1.57662 1.53995 1.21323 1.49677 1.01017 0.72406 0.72282 0.73964 1.93446 1.81379 1.40628 1.81055 1.93367 1.62755 1.54504 1.87949 1.29804 1.26044 1.12288 1.19055 1.20193 0.94897 0.94786 0.92580 1.20483 1.05742 1.04063 0.96326 1.20902 0.95948 0.95253 0.97559 1.21529 1.02614 1.01054 0.92248 1.16972 0.85303 0.86265 0.92591 1.20482 0.99470 1.22955 1.06757 0.86854 1.25960 0.95896 0.96054 0.95901 1.69798 1.04829 1.34923 1.30321 0.86458 0.78350 0.81385 0.81796 1.18604 1.17215 1.19830 1.20718 0.92876 0.82101 0.97242 0.91049 1.23262 1.00537 0.91854 0.99087 1.58505 1.67200 1.03650 1.07417 1.22326 0.94347 0.98262 0.92050 0.95584 0.92028 0.91852 0.91045 0.91169 0.88241 0.91820 0.87651 0.88777 0.88895 0.85862 0.90252 0.89401 0.88349 0.85298 0.84368 0.89772 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.58 60.06 0.58 0.98 16 2 N -0.54 -8.85 4.88 -242.92 -1.19 -10.04 16 3 C 0.03 0.50 5.60 -3.94 -0.02 0.48 16 4 C 0.13 2.40 6.00 -3.84 -0.02 2.37 16 5 N -0.99 -18.88 3.33 -106.45 -0.35 -19.24 16 6 S 2.70 58.80 4.50 -107.50 -0.48 58.31 16 7 O -0.97 -23.27 14.05 -57.17 -0.80 -24.08 16 8 O -1.00 -21.86 13.65 -57.17 -0.78 -22.64 16 9 C -0.78 -17.88 4.73 -38.87 -0.18 -18.07 16 10 C 0.00 -0.10 7.53 -39.66 -0.30 -0.40 16 11 C -0.25 -5.18 10.05 -39.28 -0.39 -5.57 16 12 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 13 C -0.15 -3.70 8.66 -38.87 -0.34 -4.04 16 14 C 0.19 4.72 5.54 -106.82 -0.59 4.13 16 15 C -0.47 -11.15 6.92 -37.74 -0.26 -11.41 16 16 H 0.11 2.75 4.18 -52.49 -0.22 2.53 16 17 C 0.08 1.85 3.82 -17.34 -0.07 1.78 16 18 N -0.78 -17.54 10.91 55.55 0.61 -16.94 16 19 Si 0.90 17.06 29.34 -169.99 -4.99 12.07 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 21 H -0.25 -4.58 7.11 56.52 0.40 -4.18 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 23 C 0.18 3.06 3.31 -67.49 -0.22 2.84 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 25 C -0.02 -0.27 4.77 -3.82 -0.02 -0.29 16 26 N -0.84 -11.35 9.03 -10.37 -0.09 -11.44 16 27 C 0.06 1.02 4.67 -3.70 -0.02 1.00 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 32 H 0.07 1.40 5.39 -51.93 -0.28 1.12 16 33 H 0.10 1.87 5.72 -51.93 -0.30 1.58 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 2.11 7.32 -52.49 -0.38 1.72 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.12 2.99 6.27 -52.49 -0.33 2.66 16 39 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 40 H 0.09 1.60 5.18 -51.93 -0.27 1.33 16 41 H 0.10 1.91 4.80 -51.93 -0.25 1.66 16 42 H 0.34 3.85 9.05 -39.29 -0.36 3.49 16 43 H 0.34 4.15 9.08 -39.29 -0.36 3.79 16 44 H 0.08 1.34 7.83 -51.93 -0.41 0.93 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -26.93 348.29 -11.17 -38.10 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -6.08 Total: 18.93 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -2.26 Total: -28.29 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -1.03 Total: -57.65 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.58 Total: -46.71 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -4.99 Total: 12.07 kcal Atomic # 16 Polarization: 58.80 SS G_CDS: -0.48 Total: 58.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.93 -11.17 -38.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601338111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.870 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds