Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00035 * 2 1 4 4 C 1.52775 * 109.42455 * 187.11539 * 3 2 1 5 5 N 1.47087 * 108.76829 * 306.42419 * 4 3 2 6 6 S 1.65590 * 120.88379 * 231.12725 * 5 4 3 7 7 O 1.42103 * 106.40222 * 354.73373 * 6 5 4 8 8 O 1.42108 * 106.40285 * 221.81712 * 6 5 4 9 9 C 1.76196 * 107.22220 * 108.27408 * 6 5 4 10 10 C 1.37644 * 120.12567 * 113.54572 * 9 6 5 11 11 C 1.38620 * 120.24564 * 180.32314 * 10 9 6 12 12 C 1.38661 * 120.50041 * 359.67275 * 11 10 9 13 13 C 1.37599 * 120.24871 * 0.02562 * 12 11 10 14 14 C 1.40691 * 120.13214 * 293.24605 * 9 6 5 15 15 C 1.41406 * 120.24022 * 359.97259 * 14 9 6 16 16 H 1.07991 * 119.99767 * 331.14824 * 15 14 9 17 17 C 1.39941 * 119.99810 * 151.14987 * 15 14 9 18 18 N 1.30823 * 120.00438 * 347.72687 * 17 15 14 19 19 Si 1.86804 * 119.99949 * 167.72585 * 17 15 14 20 20 H 1.48504 * 109.46960 * 274.85939 * 19 17 15 21 21 H 1.48494 * 109.46891 * 34.85812 * 19 17 15 22 22 H 1.48498 * 109.46871 * 154.85919 * 19 17 15 23 23 C 1.47085 * 118.23117 * 50.84805 * 5 4 3 24 24 H 1.08996 * 109.62593 * 68.99765 * 23 5 4 25 25 C 1.53005 * 109.62529 * 189.38246 * 23 5 4 26 26 N 1.46895 * 109.47114 * 180.39473 * 25 23 5 27 27 C 1.46898 * 110.99958 * 124.30158 * 2 1 3 28 28 H 1.08999 * 109.47420 * 295.69728 * 1 2 3 29 29 H 1.08998 * 109.47334 * 55.69871 * 1 2 3 30 30 H 1.09002 * 109.47369 * 175.69815 * 1 2 3 31 31 H 1.09000 * 109.49132 * 307.21440 * 3 2 1 32 32 H 1.08998 * 109.49149 * 67.29197 * 3 2 1 33 33 H 1.09000 * 109.55770 * 186.61035 * 4 3 2 34 34 H 1.09003 * 109.46162 * 66.17838 * 4 3 2 35 35 H 1.07994 * 119.88090 * 0.02562 * 10 9 6 36 36 H 1.07998 * 119.74700 * 179.69192 * 11 10 9 37 37 H 1.07996 * 119.87392 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.12460 * 180.02562 * 13 12 11 39 39 H 0.96996 * 120.00670 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46547 * 300.39357 * 25 23 5 41 41 H 1.08998 * 109.47185 * 60.39046 * 25 23 5 42 42 H 1.00897 * 111.00100 * 61.41485 * 26 25 23 43 43 H 1.00897 * 111.00155 * 185.37229 * 26 25 23 44 44 H 1.09003 * 109.49054 * 52.79046 * 27 2 1 45 45 H 1.08995 * 109.51239 * 292.71621 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5122 1.3334 -0.1785 5 7 4.0869 0.4460 0.8442 6 16 5.3384 0.9526 1.8029 7 8 5.7192 2.2343 1.3217 8 8 6.2402 -0.1417 1.8970 9 6 4.6880 1.2018 3.4213 10 6 5.0911 0.3936 4.4599 11 6 4.5760 0.5832 5.7328 12 6 3.6555 1.5912 5.9765 13 6 3.2429 2.4150 4.9546 14 6 3.7593 2.2317 3.6583 15 6 3.3430 3.0727 2.6005 16 1 4.0078 3.2675 1.7720 17 6 2.0696 3.6524 2.6271 18 7 1.1797 3.2371 3.4915 19 14 1.6404 5.0194 1.4285 20 1 2.0862 6.3226 1.9836 21 1 2.3229 4.7738 0.1327 22 1 0.1709 5.0483 1.2163 23 6 3.5163 -0.9010 0.9967 24 1 3.7590 -1.5028 0.1209 25 6 4.0906 -1.5634 2.2507 26 7 3.5257 -2.9117 2.3946 27 6 1.9954 -0.7729 1.1329 28 1 -0.3634 0.4456 0.9260 29 1 -0.3634 0.5791 -0.8489 30 1 -0.3634 -1.0248 -0.0771 31 1 1.5456 1.9337 -0.8183 32 1 1.7554 1.8531 0.9479 33 1 3.9187 2.3380 -0.0617 34 1 3.7517 0.9515 -1.1709 35 1 5.8079 -0.3943 4.2816 36 1 4.8942 -0.0589 6.5408 37 1 3.2610 1.7301 6.9722 38 1 2.5262 3.1997 5.1468 39 1 0.2970 3.6387 3.5097 40 1 5.1749 -1.6312 2.1615 41 1 3.8347 -0.9669 3.1263 42 1 3.7688 -3.4917 1.6056 43 1 3.8211 -3.3370 3.2606 44 1 1.5456 -1.7657 1.1361 45 1 1.7555 -0.2617 2.0652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601338111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = -51.753408 kcal Electronic energy + Delta-G solvation = -30723.813454 eV Core-core repulsion = 26867.412343 eV Total energy + Delta-G solvation = -3856.401111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.18198 -39.34661 -38.42644 -36.75671 -36.24473 -35.71012 -34.78895 -32.02897 -31.52635 -31.38988 -28.84875 -27.32541 -26.37792 -24.77266 -23.47466 -23.01083 -22.72184 -21.46075 -19.71144 -19.53117 -18.59298 -17.71254 -17.36928 -17.09987 -16.53506 -16.17772 -16.12244 -15.85320 -15.72146 -15.43698 -15.34098 -15.14107 -14.98180 -14.61545 -14.43886 -13.86530 -13.56219 -13.44422 -13.28673 -13.14408 -13.02602 -12.99568 -12.91589 -12.86218 -12.76815 -12.48443 -12.29754 -12.15635 -11.92355 -11.87013 -11.65473 -11.59146 -11.16530 -11.00272 -9.99647 -9.72647 -9.47435 -9.40510 -9.19135 -8.80167 -6.60740 -0.23144 0.53502 0.96611 1.33799 1.43588 1.46504 2.11688 2.14332 2.60828 2.90499 3.05794 3.42008 3.54689 3.71813 3.94606 4.04252 4.14136 4.28446 4.30627 4.42554 4.43893 4.48832 4.63907 4.67022 4.71848 4.75467 4.83140 4.86317 4.96471 4.98795 5.01793 5.09763 5.16088 5.20002 5.28111 5.32194 5.54144 5.68778 5.79038 5.87577 6.00769 6.10887 6.14527 6.17631 6.19334 6.52755 6.68168 6.70703 6.84147 8.14295 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.008279 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.594827 B = 3381.065066 C = 4444.628993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.537 5.537 3 C 0.029 3.971 4 C 0.128 3.872 5 N -0.988 5.988 6 S 2.714 3.286 7 O -1.001 7.001 8 O -1.001 7.001 9 C -0.790 4.790 10 C -0.010 4.010 11 C -0.249 4.249 12 C -0.078 4.078 13 C -0.184 4.184 14 C 0.169 3.831 15 C -0.485 4.485 16 H 0.104 0.896 17 C 0.060 3.940 18 N -0.796 5.796 19 Si 0.940 3.060 20 H -0.265 1.265 21 H -0.240 1.240 22 H -0.259 1.259 23 C 0.174 3.826 24 H 0.093 0.907 25 C -0.008 4.008 26 N -0.832 5.832 27 C 0.071 3.929 28 H 0.006 0.994 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.293 0.707 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.351 0.649 43 H 0.354 0.646 44 H 0.100 0.900 45 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 -6.439 -5.449 8.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.261 5.261 3 C -0.100 4.100 4 C 0.002 3.998 5 N -0.826 5.826 6 S 2.814 3.186 7 O -0.991 6.991 8 O -0.991 6.991 9 C -0.885 4.885 10 C -0.030 4.030 11 C -0.269 4.269 12 C -0.096 4.096 13 C -0.204 4.204 14 C 0.165 3.835 15 C -0.513 4.513 16 H 0.122 0.878 17 C -0.159 4.159 18 N -0.419 5.419 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.163 1.163 22 H -0.182 1.182 23 C 0.068 3.932 24 H 0.110 0.890 25 C -0.140 4.140 26 N -0.364 5.364 27 C -0.058 4.058 28 H 0.025 0.975 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.118 0.882 45 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -2.812 -6.148 -6.146 9.137 hybrid contribution -0.186 1.012 1.461 1.787 sum -2.998 -5.135 -4.686 7.571 Atomic orbital electron populations 1.22378 0.86572 1.02940 1.00097 1.62025 1.08276 1.13126 1.42659 1.22528 0.95267 0.90208 1.02012 1.21489 0.93213 0.94017 0.91036 1.57502 1.53657 1.22209 1.49239 1.00578 0.72740 0.71659 0.73643 1.93403 1.82227 1.42135 1.81380 1.93362 1.63450 1.54259 1.88010 1.30061 1.25772 1.12271 1.20364 1.20460 0.94987 0.94802 0.92717 1.20844 1.05069 1.04011 0.96980 1.21215 0.95540 0.94662 0.98226 1.21550 1.03753 1.02057 0.93023 1.17252 0.86125 0.87050 0.93088 1.20486 1.00151 1.24064 1.06598 0.87839 1.26482 0.95217 0.97206 0.97007 1.69824 1.05246 1.35592 1.31278 0.85813 0.79001 0.78659 0.80506 1.18988 1.16251 1.18243 1.20926 0.92813 0.81331 0.98139 0.88953 1.23016 0.99796 0.93280 0.97919 1.58437 1.66736 1.02490 1.08740 1.22193 0.94440 0.98580 0.90598 0.97517 0.90090 0.89923 0.88734 0.93996 0.89680 0.89069 0.86251 0.85717 0.86409 0.87085 0.89612 0.90532 0.90898 0.83578 0.83256 0.88183 0.97460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.58 127.69 1.22 1.97 16 2 N -0.54 -16.50 4.88 -922.45 -4.51 -21.00 16 3 C 0.03 0.98 5.60 86.23 0.48 1.47 16 4 C 0.13 4.44 6.00 86.19 0.52 4.96 16 5 N -0.99 -37.27 3.33 -490.70 -1.63 -38.91 16 6 S 2.71 119.22 4.50 -56.49 -0.25 118.96 16 7 O -1.00 -48.83 14.05 -128.00 -1.80 -50.63 16 8 O -1.00 -43.73 13.65 -128.00 -1.75 -45.48 16 9 C -0.79 -37.09 4.73 22.73 0.11 -36.98 16 10 C -0.01 -0.43 7.53 22.22 0.17 -0.26 16 11 C -0.25 -10.27 10.05 22.46 0.23 -10.05 16 12 C -0.08 -3.38 10.02 22.22 0.22 -3.16 16 13 C -0.18 -9.05 8.66 22.73 0.20 -8.85 16 14 C 0.17 8.52 5.54 -21.29 -0.12 8.41 16 15 C -0.49 -23.79 6.92 23.46 0.16 -23.63 16 16 H 0.10 5.19 4.18 -2.92 -0.01 5.18 16 17 C 0.06 2.73 3.82 85.26 0.33 3.06 16 18 N -0.80 -36.89 10.91 21.83 0.24 -36.65 16 19 Si 0.94 34.71 29.34 68.60 2.01 36.72 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.24 -8.42 7.11 99.48 0.71 -7.71 16 22 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 23 C 0.17 5.79 3.31 44.96 0.15 5.94 16 24 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 25 C -0.01 -0.26 4.77 86.31 0.41 0.16 16 26 N -0.83 -20.96 9.03 -186.72 -1.69 -22.65 16 27 C 0.07 2.37 4.67 86.38 0.40 2.78 16 28 H 0.01 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 2.70 8.06 -2.39 -0.02 2.68 16 32 H 0.04 1.68 5.39 -2.39 -0.01 1.66 16 33 H 0.08 3.22 5.72 -2.39 -0.01 3.20 16 34 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.12 4.72 7.32 -2.91 -0.02 4.70 16 36 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.11 5.61 6.27 -2.91 -0.02 5.59 16 39 H 0.29 12.35 8.30 -92.71 -0.77 11.58 16 40 H 0.08 2.72 5.18 -2.38 -0.01 2.71 16 41 H 0.07 2.83 4.80 -2.39 -0.01 2.82 16 42 H 0.35 7.13 9.05 -89.70 -0.81 6.32 16 43 H 0.35 7.88 9.08 -89.70 -0.81 7.06 16 44 H 0.10 2.97 7.83 -2.39 -0.02 2.96 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -58.86 348.29 -5.47 -64.33 By element: Atomic # 1 Polarization: 50.09 SS G_CDS: -0.58 Total: 49.51 kcal Atomic # 6 Polarization: -58.69 SS G_CDS: 4.48 Total: -54.21 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -7.59 Total: -119.21 kcal Atomic # 8 Polarization: -92.56 SS G_CDS: -3.55 Total: -96.11 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.01 Total: 36.72 kcal Atomic # 16 Polarization: 119.22 SS G_CDS: -0.25 Total: 118.96 kcal Total: -58.86 -5.47 -64.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601338111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.577 kcal (2) G-P(sol) polarization free energy of solvation -58.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds