Wall clock time and date at job start Sat Apr 11 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99907 * 2 1 4 4 C 1.50703 * 109.47465 * 275.00632 * 3 2 1 5 5 H 1.08008 * 119.99477 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00106 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00341 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00044 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47108 * 120.00024 * 8 6 4 11 11 H 1.48495 * 109.47292 * 240.00384 * 8 6 4 12 12 S 1.65601 * 120.00222 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40166 * 156.45607 * 12 2 1 14 14 O 1.42102 * 106.39928 * 23.53621 * 12 2 1 15 15 N 1.65591 * 107.21750 * 269.99625 * 12 2 1 16 16 C 1.46503 * 120.00089 * 65.00294 * 15 12 2 17 17 C 1.50700 * 109.47367 * 164.99936 * 16 15 12 18 18 C 1.38075 * 119.82358 * 259.99993 * 17 16 15 19 19 C 1.38220 * 119.82191 * 179.97438 * 18 17 16 20 20 C 1.38056 * 119.87644 * 0.06557 * 19 18 17 21 21 C 1.38688 * 120.37526 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.72366 * 359.90783 * 21 20 19 23 23 C 1.50722 * 121.66066 * 180.20422 * 22 21 20 24 24 C 1.52896 * 109.94779 * 343.19821 * 23 22 21 25 25 N 1.47158 * 108.49549 * 50.40350 * 24 23 22 26 26 C 1.46642 * 110.25008 * 288.68243 * 25 24 23 27 27 H 1.09005 * 109.46865 * 269.99682 * 1 2 3 28 28 H 1.08999 * 109.47625 * 29.99099 * 1 2 3 29 29 H 1.08999 * 109.47436 * 150.00402 * 1 2 3 30 30 H 1.09006 * 109.47168 * 35.00560 * 3 2 1 31 31 H 1.08998 * 109.47031 * 155.00038 * 3 2 1 32 32 H 0.96999 * 120.00351 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00270 * 244.99509 * 15 12 2 34 34 H 1.08999 * 109.47172 * 44.99703 * 16 15 12 35 35 H 1.09004 * 109.46891 * 284.99572 * 16 15 12 36 36 H 1.07999 * 120.08978 * 0.02562 * 18 17 16 37 37 H 1.08004 * 120.05962 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.81492 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.39244 * 223.04930 * 23 22 21 40 40 H 1.09007 * 109.38856 * 103.34470 * 23 22 21 41 41 H 1.09003 * 109.62956 * 170.10440 * 24 23 22 42 42 H 1.08994 * 109.63472 * 290.69835 * 24 23 22 43 43 H 1.00905 * 111.00266 * 165.26808 * 25 24 23 44 44 H 1.08993 * 109.27232 * 172.75579 * 26 25 24 45 45 H 1.08994 * 109.27069 * 292.23674 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7659 -1.4154 5 1 1.9287 1.1936 -2.2332 6 6 2.9995 2.9510 -1.6663 7 7 3.5024 3.6475 -0.6705 8 14 3.1784 3.5668 -3.4207 9 1 2.5308 2.6070 -4.3507 10 1 2.5266 4.8951 -3.5480 11 1 4.6194 3.6881 -3.7583 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5382 -1.8592 1.5809 16 6 1.3948 -2.1789 2.4392 17 6 1.8804 -2.8758 3.6840 18 6 1.7922 -4.2504 3.7801 19 6 2.2380 -4.8896 4.9217 20 6 2.7681 -4.1513 5.9608 21 6 2.8566 -2.7705 5.8662 22 6 2.4140 -2.1335 4.7263 23 6 2.4936 -0.6360 4.5752 24 6 2.7066 0.0156 5.9419 25 7 3.8315 -0.6581 6.6100 26 6 3.4392 -2.0080 7.0273 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6501 2.0043 0.5896 31 1 3.1857 1.1177 0.4343 32 1 3.9651 4.4815 -0.8470 33 1 3.4389 -1.8968 1.9390 34 1 0.7081 -2.8325 1.9013 35 1 0.8795 -1.2589 2.7155 36 1 1.3767 -4.8246 2.9653 37 1 2.1713 -5.9647 5.0008 38 1 3.1158 -4.6517 6.8524 39 1 1.5657 -0.2665 4.1387 40 1 3.3266 -0.3823 3.9194 41 1 2.9381 1.0727 5.8114 42 1 1.8047 -0.0932 6.5441 43 1 4.1611 -0.1182 7.3961 44 1 4.3150 -2.5375 7.4022 45 1 2.6953 -1.9373 7.8207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601345340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:46 Heat of formation + Delta-G solvation = -49.308302 kcal Electronic energy + Delta-G solvation = -28079.025625 eV Core-core repulsion = 24222.730542 eV Total energy + Delta-G solvation = -3856.295083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38487 -36.93638 -36.56146 -35.52382 -35.32392 -35.13147 -32.42228 -32.29196 -31.12536 -29.49231 -27.76328 -25.66261 -25.02363 -24.72542 -23.46879 -22.27546 -21.07927 -19.72286 -18.89976 -17.34331 -17.11008 -16.58046 -16.48532 -16.11465 -15.81375 -15.55076 -15.10205 -14.98339 -14.53153 -14.30305 -13.94070 -13.57167 -13.45635 -13.27481 -13.18564 -12.91820 -12.67755 -12.29068 -12.17230 -12.11378 -12.09048 -11.69153 -11.59758 -11.45502 -11.35062 -11.13464 -11.06267 -10.82513 -10.70549 -10.68167 -10.49591 -10.01909 -9.73794 -9.28229 -9.02104 -8.71364 -8.56891 -8.43456 -8.05047 -6.05196 -4.08887 1.01029 1.24198 1.40005 3.32121 3.39920 3.42459 3.45917 3.72646 3.95758 4.18774 4.45295 4.46336 4.51255 4.65625 4.82462 4.94877 5.05862 5.09154 5.13860 5.17561 5.24040 5.30220 5.34702 5.39304 5.46958 5.60993 5.65374 5.72517 5.86539 5.88851 5.97008 6.03822 6.09966 6.30812 6.32597 6.37183 6.52090 6.57192 6.68356 6.83297 7.10793 7.13214 7.28159 7.44052 7.63180 7.92590 8.22059 8.93793 9.56412 11.03387 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.003445 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.399077 B = 8126.929037 C = 9337.667139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.782 3.218 13 O -0.963 6.963 14 O -0.999 6.999 15 N -1.129 6.129 16 C 0.162 3.838 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.126 4.126 20 C -0.113 4.113 21 C -0.086 4.086 22 C -0.048 4.048 23 C -0.084 4.084 24 C 0.054 3.946 25 N -0.684 5.684 26 C 0.098 3.902 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.414 0.586 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.346 0.654 44 H 0.086 0.914 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 -12.215 18.001 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.136 3.864 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.789 3.211 13 O -0.946 6.946 14 O -0.982 6.982 15 N -0.888 5.888 16 C 0.035 3.965 17 C -0.097 4.097 18 C -0.120 4.120 19 C -0.144 4.144 20 C -0.132 4.132 21 C -0.086 4.086 22 C -0.049 4.049 23 C -0.121 4.121 24 C -0.075 4.075 25 N -0.315 5.315 26 C -0.031 4.031 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.164 0.836 44 H 0.104 0.896 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.198 -12.716 16.593 21.322 hybrid contribution -0.121 0.775 0.373 0.869 sum -4.319 -11.941 16.966 21.191 Atomic orbital electron populations 1.21371 0.80264 1.03544 1.00100 1.57600 1.14225 1.23322 1.88709 1.19048 0.91023 0.78704 0.97643 1.21543 1.36007 1.06240 0.93011 0.92141 1.24922 0.95115 0.96530 0.97447 1.69923 1.37417 1.15274 1.30839 0.86468 0.78004 0.78468 0.84664 1.19648 1.20997 1.20802 1.01934 0.73376 0.72947 0.72812 1.93647 1.40636 1.84818 1.75539 1.93516 1.67651 1.60209 1.76859 1.56295 1.14409 1.86135 1.31912 1.20078 0.88188 0.99240 0.88946 1.19814 1.00923 0.93764 0.95249 1.21086 0.99256 0.93704 0.97946 1.21013 0.99811 0.99757 0.93823 1.21006 1.00063 0.93092 0.99010 1.19523 0.99976 0.93609 0.95484 1.19466 0.96779 0.95839 0.92773 1.20670 1.03395 0.90468 0.97607 1.22017 0.91966 0.98541 0.94993 1.60578 1.35323 1.03115 1.32498 1.20745 0.98812 0.89877 0.93625 0.94400 0.90367 0.91579 0.94722 0.94394 0.92773 0.75334 0.89948 0.90936 0.85633 0.85957 0.86228 0.89789 0.89037 0.89805 0.94672 0.83604 0.89626 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.68 59.85 0.64 2.20 16 2 N -1.00 -20.24 3.23 -123.05 -0.40 -20.63 16 3 C 0.26 6.37 5.08 -5.19 -0.03 6.34 16 4 C -0.53 -14.83 9.38 -34.44 -0.32 -15.16 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 S 2.78 54.92 6.10 -107.50 -0.66 54.26 16 13 O -0.96 -23.21 17.11 -57.17 -0.98 -24.19 16 14 O -1.00 -20.66 16.21 -57.17 -0.93 -21.58 16 15 N -1.13 -17.02 6.05 -11.65 -0.07 -17.09 16 16 C 0.16 2.04 5.72 -5.19 -0.03 2.01 16 17 C -0.10 -1.14 5.28 -104.53 -0.55 -1.69 16 18 C -0.10 -1.10 9.66 -39.65 -0.38 -1.48 16 19 C -0.13 -1.21 10.05 -39.65 -0.40 -1.61 16 20 C -0.11 -1.07 9.65 -39.48 -0.38 -1.45 16 21 C -0.09 -0.91 5.79 -104.62 -0.61 -1.52 16 22 C -0.05 -0.56 5.77 -104.59 -0.60 -1.16 16 23 C -0.08 -0.97 5.27 -27.93 -0.15 -1.11 16 24 C 0.05 0.53 6.58 -3.74 -0.02 0.50 16 25 N -0.68 -6.46 6.88 -115.17 -0.79 -7.25 16 26 C 0.10 0.86 6.34 -5.15 -0.03 0.83 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 30 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 31 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.41 5.93 8.64 -34.46 -0.30 5.63 16 34 H 0.08 1.00 7.60 -51.93 -0.39 0.61 16 35 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 36 H 0.13 1.22 8.03 -52.49 -0.42 0.80 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.08 0.92 6.53 -51.93 -0.34 0.58 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.32 8.05 -51.93 -0.42 -0.10 16 43 H 0.35 2.49 8.90 -39.29 -0.35 2.14 16 44 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 45 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -34.57 378.39 -12.03 -46.60 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.66 Total: 4.21 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.97 Total: -11.64 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -0.52 Total: -70.25 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.90 Total: -45.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.66 Total: 54.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.57 -12.03 -46.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601345340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.706 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds