Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99907 * 2 1 4 4 C 1.50703 * 109.47465 * 275.00632 * 3 2 1 5 5 H 1.08008 * 119.99477 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00106 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00341 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00044 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47108 * 120.00024 * 8 6 4 11 11 H 1.48495 * 109.47292 * 240.00384 * 8 6 4 12 12 S 1.65601 * 120.00222 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40166 * 156.45607 * 12 2 1 14 14 O 1.42102 * 106.39928 * 23.53621 * 12 2 1 15 15 N 1.65591 * 107.21750 * 269.99625 * 12 2 1 16 16 C 1.46503 * 120.00089 * 65.00294 * 15 12 2 17 17 C 1.50700 * 109.47367 * 164.99936 * 16 15 12 18 18 C 1.38075 * 119.82358 * 259.99993 * 17 16 15 19 19 C 1.38220 * 119.82191 * 179.97438 * 18 17 16 20 20 C 1.38056 * 119.87644 * 0.06557 * 19 18 17 21 21 C 1.38688 * 120.37526 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.72366 * 359.90783 * 21 20 19 23 23 C 1.50722 * 121.66066 * 180.20422 * 22 21 20 24 24 C 1.52896 * 109.94779 * 343.19821 * 23 22 21 25 25 N 1.47158 * 108.49549 * 50.40350 * 24 23 22 26 26 C 1.46642 * 110.25008 * 288.68243 * 25 24 23 27 27 H 1.09005 * 109.46865 * 269.99682 * 1 2 3 28 28 H 1.08999 * 109.47625 * 29.99099 * 1 2 3 29 29 H 1.08999 * 109.47436 * 150.00402 * 1 2 3 30 30 H 1.09006 * 109.47168 * 35.00560 * 3 2 1 31 31 H 1.08998 * 109.47031 * 155.00038 * 3 2 1 32 32 H 0.96999 * 120.00351 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00270 * 244.99509 * 15 12 2 34 34 H 1.08999 * 109.47172 * 44.99703 * 16 15 12 35 35 H 1.09004 * 109.46891 * 284.99572 * 16 15 12 36 36 H 1.07999 * 120.08978 * 0.02562 * 18 17 16 37 37 H 1.08004 * 120.05962 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.81492 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.39244 * 223.04930 * 23 22 21 40 40 H 1.09007 * 109.38856 * 103.34470 * 23 22 21 41 41 H 1.09003 * 109.62956 * 170.10440 * 24 23 22 42 42 H 1.08994 * 109.63472 * 290.69835 * 24 23 22 43 43 H 1.00905 * 111.00266 * 165.26808 * 25 24 23 44 44 H 1.08993 * 109.27232 * 172.75579 * 26 25 24 45 45 H 1.08994 * 109.27069 * 292.23674 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7659 -1.4154 5 1 1.9287 1.1936 -2.2332 6 6 2.9995 2.9510 -1.6663 7 7 3.5024 3.6475 -0.6705 8 14 3.1784 3.5668 -3.4207 9 1 2.5308 2.6070 -4.3507 10 1 2.5266 4.8951 -3.5480 11 1 4.6194 3.6881 -3.7583 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5382 -1.8592 1.5809 16 6 1.3948 -2.1789 2.4392 17 6 1.8804 -2.8758 3.6840 18 6 1.7922 -4.2504 3.7801 19 6 2.2380 -4.8896 4.9217 20 6 2.7681 -4.1513 5.9608 21 6 2.8566 -2.7705 5.8662 22 6 2.4140 -2.1335 4.7263 23 6 2.4936 -0.6360 4.5752 24 6 2.7066 0.0156 5.9419 25 7 3.8315 -0.6581 6.6100 26 6 3.4392 -2.0080 7.0273 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6501 2.0043 0.5896 31 1 3.1857 1.1177 0.4343 32 1 3.9651 4.4815 -0.8470 33 1 3.4389 -1.8968 1.9390 34 1 0.7081 -2.8325 1.9013 35 1 0.8795 -1.2589 2.7155 36 1 1.3767 -4.8246 2.9653 37 1 2.1713 -5.9647 5.0008 38 1 3.1158 -4.6517 6.8524 39 1 1.5657 -0.2665 4.1387 40 1 3.3266 -0.3823 3.9194 41 1 2.9381 1.0727 5.8114 42 1 1.8047 -0.0932 6.5441 43 1 4.1611 -0.1182 7.3961 44 1 4.3150 -2.5375 7.4022 45 1 2.6953 -1.9373 7.8207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601345340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -75.550722 kcal Electronic energy + Delta-G solvation = -28080.163582 eV Core-core repulsion = 24222.730542 eV Total energy + Delta-G solvation = -3857.433040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17579 -38.30950 -37.67335 -37.20771 -36.85397 -36.39194 -34.49225 -33.22159 -31.90091 -30.32596 -29.65182 -26.84302 -26.54370 -25.47072 -24.24155 -24.19946 -21.94264 -20.54385 -20.34648 -18.99160 -18.40777 -18.32972 -17.71753 -17.43992 -16.89644 -16.59951 -16.35610 -15.98841 -15.91310 -15.25519 -15.10732 -14.95263 -14.77974 -14.49081 -14.07615 -14.04033 -13.93384 -13.79635 -13.50903 -13.32693 -13.15530 -13.12914 -13.02567 -12.92794 -12.89164 -12.70392 -12.46061 -12.38208 -12.34479 -11.96548 -11.72925 -11.65240 -11.48427 -10.60325 -10.49192 -9.84051 -9.73326 -9.51162 -9.28575 -8.19611 -6.31129 -0.36971 0.38876 0.45570 1.38511 1.41378 1.52722 2.07052 2.40964 2.61287 2.84675 3.11455 3.28848 3.44148 3.66040 3.71854 3.88353 4.03288 4.11294 4.16869 4.29721 4.37754 4.40619 4.47242 4.53260 4.57815 4.71269 4.74626 4.77448 4.85619 4.86634 4.98125 5.05819 5.08839 5.10658 5.21742 5.24856 5.47436 5.56231 5.59745 5.70241 5.71143 5.85651 5.97554 6.06719 6.07733 6.13523 6.51142 6.77292 7.37696 8.87952 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.003445 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.399077 B = 8126.929037 C = 9337.667139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.001 6.001 3 C 0.274 3.726 4 C -0.550 4.550 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.269 1.269 11 H -0.280 1.280 12 S 2.799 3.201 13 O -1.012 7.012 14 O -1.008 7.008 15 N -1.114 6.114 16 C 0.157 3.843 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.111 4.111 21 C -0.098 4.098 22 C -0.064 4.064 23 C -0.086 4.086 24 C 0.057 3.943 25 N -0.698 5.698 26 C 0.099 3.901 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.016 0.984 32 H 0.267 0.733 33 H 0.418 0.582 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.358 0.642 44 H 0.099 0.901 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 -13.224 19.355 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.843 5.843 3 C 0.150 3.850 4 C -0.590 4.590 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.194 1.194 11 H -0.206 1.206 12 S 2.807 3.193 13 O -0.996 6.996 14 O -0.991 6.991 15 N -0.876 5.876 16 C 0.032 3.968 17 C -0.111 4.111 18 C -0.131 4.131 19 C -0.144 4.144 20 C -0.130 4.130 21 C -0.098 4.098 22 C -0.065 4.065 23 C -0.123 4.123 24 C -0.072 4.072 25 N -0.330 5.330 26 C -0.030 4.030 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.252 0.748 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.178 0.822 44 H 0.117 0.883 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.912 -13.728 17.953 23.128 hybrid contribution 0.070 0.990 0.059 0.994 sum -4.842 -12.739 18.012 22.587 Atomic orbital electron populations 1.21624 0.78037 1.03654 1.02619 1.57458 1.15725 1.21845 1.89277 1.18595 0.90400 0.80200 0.95782 1.21884 1.36201 1.06576 0.94290 0.93104 1.25714 0.94812 0.96793 1.01334 1.70005 1.37878 1.15700 1.32625 0.85558 0.77989 0.78437 0.80029 1.19515 1.19395 1.20593 1.01168 0.72069 0.72567 0.73459 1.93574 1.43052 1.85453 1.77502 1.93495 1.67652 1.60196 1.77791 1.55875 1.15581 1.85527 1.30654 1.20289 0.87257 1.00133 0.89106 1.19760 1.02163 0.94304 0.94854 1.21298 0.99507 0.93400 0.98900 1.21343 0.98815 1.01100 0.93185 1.21353 0.99065 0.92698 0.99867 1.19856 0.99791 0.94525 0.95659 1.19571 0.97606 0.95784 0.93504 1.20645 1.02399 0.91039 0.98261 1.21958 0.92597 0.98420 0.94275 1.60545 1.35311 1.03762 1.33386 1.20815 0.99656 0.89337 0.93201 0.90687 0.91042 0.90673 0.95067 0.96649 0.92395 0.74780 0.89319 0.89907 0.84906 0.83509 0.83556 0.89840 0.91385 0.89752 0.93794 0.82233 0.88339 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.79 10.68 127.77 1.36 4.15 16 2 N -1.00 -41.00 3.23 -543.21 -1.75 -42.76 16 3 C 0.27 13.86 5.08 85.63 0.43 14.29 16 4 C -0.55 -31.41 9.38 25.60 0.24 -31.17 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.74 5.46 84.65 0.46 1.21 16 7 N -0.92 -54.14 13.29 21.44 0.28 -53.86 16 8 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 9 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 S 2.80 111.85 6.10 -56.49 -0.34 111.51 16 13 O -1.01 -50.35 17.11 -128.00 -2.19 -52.54 16 14 O -1.01 -41.35 16.21 -128.00 -2.07 -43.43 16 15 N -1.11 -33.77 6.05 -190.78 -1.15 -34.93 16 16 C 0.16 3.85 5.72 85.63 0.49 4.34 16 17 C -0.11 -2.49 5.28 -19.81 -0.10 -2.59 16 18 C -0.11 -2.26 9.66 22.23 0.21 -2.04 16 19 C -0.13 -2.10 10.05 22.22 0.22 -1.88 16 20 C -0.11 -1.80 9.65 22.33 0.22 -1.59 16 21 C -0.10 -1.90 5.79 -19.87 -0.12 -2.02 16 22 C -0.06 -1.44 5.77 -19.85 -0.11 -1.55 16 23 C -0.09 -1.98 5.27 29.82 0.16 -1.82 16 24 C 0.06 1.07 6.58 86.22 0.57 1.64 16 25 N -0.70 -12.27 6.88 -518.28 -3.56 -15.83 16 26 C 0.10 1.51 6.34 85.58 0.54 2.06 16 27 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 29 H 0.07 2.30 7.02 -2.39 -0.02 2.28 16 30 H 0.03 1.59 8.11 -2.38 -0.02 1.57 16 31 H 0.02 0.85 7.61 -2.39 -0.02 0.83 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.42 12.25 8.64 -96.75 -0.84 11.42 16 34 H 0.09 2.06 7.60 -2.39 -0.02 2.04 16 35 H 0.08 1.84 6.47 -2.38 -0.02 1.83 16 36 H 0.13 2.38 8.03 -2.91 -0.02 2.36 16 37 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.08 1.83 6.53 -2.39 -0.02 1.82 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 0.74 8.05 -2.39 -0.02 0.72 16 43 H 0.36 4.63 8.90 -89.69 -0.80 3.83 16 44 H 0.10 1.25 8.13 -2.39 -0.02 1.23 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -74.27 378.39 -4.81 -79.08 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.62 Total: 22.70 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.58 Total: -16.98 kcal Atomic # 7 Polarization: -141.19 SS G_CDS: -6.18 Total: -147.37 kcal Atomic # 8 Polarization: -91.70 SS G_CDS: -4.26 Total: -95.97 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 111.85 SS G_CDS: -0.34 Total: 111.51 kcal Total: -74.27 -4.81 -79.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601345340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.528 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds