Wall clock time and date at job start Sat Apr 11 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99682 * 2 1 4 4 N 1.46502 * 109.46865 * 125.00365 * 3 2 1 5 5 C 1.46506 * 119.99937 * 85.00033 * 4 3 2 6 6 C 1.50703 * 109.47289 * 84.99851 * 5 4 3 7 7 H 1.07994 * 119.99399 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99789 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00144 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99733 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46632 * 90.00476 * 10 8 6 12 12 H 1.48496 * 109.46690 * 210.00029 * 10 8 6 13 13 H 1.48498 * 109.47171 * 330.00226 * 10 8 6 14 14 S 1.65596 * 120.00234 * 264.99761 * 4 3 2 15 15 O 1.42102 * 106.39988 * 23.54158 * 14 4 3 16 16 O 1.42093 * 106.40335 * 156.45809 * 14 4 3 17 17 C 1.76205 * 107.21728 * 270.00185 * 14 4 3 18 18 C 1.34570 * 126.18727 * 269.70870 * 17 14 4 19 19 C 1.40495 * 108.03164 * 179.97438 * 18 17 14 20 20 N 1.30127 * 108.22834 * 0.30722 * 19 18 17 21 21 N 1.35202 * 126.18868 * 90.02418 * 17 14 4 22 22 C 1.46494 * 126.00710 * 359.91402 * 21 17 14 23 23 C 1.50948 * 123.48209 * 179.97438 * 19 18 17 24 24 C 1.53372 * 108.20576 * 343.71649 * 23 19 18 25 25 C 1.53029 * 109.75176 * 50.64122 * 24 23 19 26 26 C 1.50884 * 128.32711 * 0.95976 * 18 17 14 27 27 H 1.07997 * 120.00285 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00146 * 359.97438 * 1 2 3 29 29 H 1.07992 * 119.99842 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47887 * 5.00340 * 3 2 1 31 31 H 1.09003 * 109.47459 * 244.99867 * 3 2 1 32 32 H 1.09001 * 109.47060 * 205.00301 * 5 4 3 33 33 H 1.09004 * 109.47073 * 324.99790 * 5 4 3 34 34 H 0.96997 * 119.99752 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.47619 * 89.99663 * 22 21 17 36 36 H 1.09000 * 109.46959 * 210.00331 * 22 21 17 37 37 H 1.09001 * 109.46873 * 329.99653 * 22 21 17 38 38 H 1.09000 * 109.71664 * 103.38769 * 23 19 18 39 39 H 1.09002 * 109.71708 * 223.99275 * 23 19 18 40 40 H 1.09002 * 109.42586 * 170.73035 * 24 23 19 41 41 H 1.09006 * 109.42430 * 290.55620 * 24 23 19 42 42 H 1.09004 * 109.42403 * 48.33749 * 25 24 23 43 43 H 1.08994 * 109.43287 * 168.18571 * 25 24 23 44 44 H 1.09009 * 109.87073 * 43.06399 * 26 18 17 45 45 H 1.08998 * 109.53711 * 282.47620 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3218 0.7268 1.0023 6 6 5.2698 1.7227 0.3855 7 1 4.9183 2.7080 0.1170 8 6 6.5860 1.3764 0.1650 9 7 7.0140 0.1767 0.4925 10 14 7.7610 2.6107 -0.6001 11 1 8.4095 3.4071 0.4724 12 1 8.7999 1.8887 -1.3776 13 1 7.0075 3.5172 -1.5032 14 16 2.5444 2.0461 2.5562 15 8 1.1237 2.0287 2.5832 16 8 3.3481 1.4590 3.5704 17 6 3.0196 3.7403 2.4631 18 6 4.1985 4.2575 2.8551 19 6 4.1700 5.6405 2.6090 20 7 3.0124 5.9386 2.0946 21 7 2.2636 4.7566 1.9903 22 6 0.9019 4.6437 1.4620 23 6 5.3210 6.5657 2.9211 24 6 6.2736 5.8394 3.8789 25 6 6.6117 4.4551 3.3210 26 6 5.3885 3.5370 3.4392 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 4.6874 0.4393 1.9880 33 1 4.2584 -0.1564 0.3665 34 1 7.9399 -0.0671 0.3370 35 1 0.1855 4.7723 2.2733 36 1 0.7396 5.4141 0.7083 37 1 0.7675 3.6604 1.0112 38 1 5.8479 6.8204 2.0015 39 1 4.9455 7.4736 3.3932 40 1 7.1897 6.4197 3.9884 41 1 5.7956 5.7310 4.8525 42 1 6.8969 4.5464 2.2729 43 1 7.4408 4.0291 3.8858 44 1 5.5682 2.6127 2.8900 45 1 5.1984 3.3103 4.4883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601420746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:53 Heat of formation + Delta-G solvation = 18.289092 kcal Electronic energy + Delta-G solvation = -29783.775090 eV Core-core repulsion = 25930.411250 eV Total energy + Delta-G solvation = -3853.363840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20728 -37.14192 -36.52116 -36.23845 -35.42469 -33.34387 -32.55772 -31.98521 -31.55421 -28.40290 -27.50225 -26.87938 -25.07861 -23.01132 -22.61425 -21.76918 -21.35103 -19.65963 -18.68898 -18.25500 -17.37396 -16.83187 -16.39130 -15.65262 -15.45005 -15.22003 -14.72932 -14.48757 -14.42450 -13.97818 -13.74582 -13.56780 -13.49473 -13.19818 -12.74612 -12.58289 -12.40796 -12.26500 -12.17303 -11.74962 -11.61424 -11.46027 -11.42776 -11.31384 -11.25215 -11.16211 -10.83444 -10.75270 -10.65914 -10.46215 -10.34600 -10.15647 -9.95038 -9.86006 -9.27490 -9.11781 -8.53911 -8.24752 -8.03795 -6.16622 -4.22579 0.79621 1.64835 2.51931 2.60286 2.85148 3.21607 3.29478 3.32275 3.57632 4.14863 4.33089 4.44513 4.78593 5.01346 5.05158 5.14953 5.18282 5.18702 5.27630 5.32653 5.34428 5.57812 5.61190 5.64601 5.69039 5.77943 5.84940 5.92903 5.99791 6.13083 6.14615 6.17860 6.28485 6.36133 6.45462 6.73792 6.76477 6.86791 7.00437 7.04876 7.06320 7.19543 7.32040 7.48483 7.77832 7.79895 8.06566 8.82040 9.43822 10.91159 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.007552 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.417476 B = 3706.757578 C = 5615.382849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.163 4.163 3 C 0.156 3.844 4 N -0.972 5.972 5 C 0.242 3.758 6 C -0.539 4.539 7 H 0.061 0.939 8 C 0.072 3.928 9 N -0.887 5.887 10 Si 0.884 3.116 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.275 1.275 14 S 2.704 3.296 15 O -0.970 6.970 16 O -0.938 6.938 17 C -0.483 4.483 18 C -0.088 4.088 19 C 0.056 3.944 20 N -0.261 5.261 21 N -0.329 5.329 22 C 0.094 3.906 23 C -0.034 4.034 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.068 4.068 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 6.876 2.210 10.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.183 4.183 3 C 0.030 3.970 4 N -0.811 5.811 5 C 0.120 3.880 6 C -0.578 4.578 7 H 0.079 0.921 8 C -0.132 4.132 9 N -0.524 5.524 10 Si 0.712 3.288 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.200 1.200 14 S 2.788 3.212 15 O -0.960 6.960 16 O -0.927 6.927 17 C -0.687 4.687 18 C -0.102 4.102 19 C -0.112 4.112 20 N -0.085 5.085 21 N -0.114 5.114 22 C -0.047 4.047 23 C -0.073 4.073 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.105 4.105 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.129 0.871 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.225 7.291 2.395 11.249 hybrid contribution 1.429 0.673 -0.694 1.725 sum -6.797 7.964 1.701 10.607 Atomic orbital electron populations 1.23777 0.95781 1.01612 1.01214 1.23419 0.96002 0.99653 0.99195 1.20263 0.90770 0.94423 0.91532 1.57455 1.25877 1.69437 1.28366 1.19367 0.75067 0.94026 0.99500 1.21468 0.94365 0.99853 1.42101 0.92106 1.24850 0.97928 0.95141 0.95288 1.69920 1.16741 1.18819 1.46969 0.86710 0.80935 0.81491 0.79680 1.19953 1.21161 1.19978 1.01868 0.73042 0.72368 0.73962 1.93521 1.28759 1.86837 1.86905 1.93588 1.70237 1.73740 1.55121 1.33397 1.02300 1.18673 1.14379 1.20083 0.94571 0.93294 1.02279 1.22475 0.94269 0.94700 0.99731 1.76762 1.04848 1.06622 1.20265 1.47927 1.12518 1.02904 1.48083 1.22134 0.77797 1.04445 1.00305 1.20115 0.91238 0.95645 1.00343 1.21618 0.98592 0.96734 0.98616 1.21571 0.97679 0.94230 1.02048 1.20499 0.89651 0.99282 1.01116 0.88671 0.88596 0.86794 0.91607 0.88775 0.92666 0.93648 0.92512 0.89991 0.89105 0.88827 0.89911 0.90305 0.91190 0.91586 0.91342 0.91175 0.87113 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 14.32 29.01 0.42 -2.01 16 2 C -0.16 -2.46 9.84 -36.03 -0.35 -2.81 16 3 C 0.16 2.57 5.78 -5.19 -0.03 2.54 16 4 N -0.97 -19.14 2.75 -116.94 -0.32 -19.46 16 5 C 0.24 5.61 5.43 -5.19 -0.03 5.58 16 6 C -0.54 -13.38 8.40 -34.44 -0.29 -13.67 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -23.95 13.29 55.43 0.74 -23.21 16 10 Si 0.88 20.16 29.54 -169.99 -5.02 15.14 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 14 S 2.70 53.45 5.57 -107.50 -0.60 52.85 16 15 O -0.97 -18.42 14.79 -57.17 -0.85 -19.27 16 16 O -0.94 -20.74 15.04 -57.17 -0.86 -21.60 16 17 C -0.48 -9.43 6.99 -17.36 -0.12 -9.55 16 18 C -0.09 -1.73 5.86 -104.98 -0.62 -2.34 16 19 C 0.06 1.00 7.10 -82.34 -0.58 0.42 16 20 N -0.26 -4.82 12.56 33.75 0.42 -4.40 16 21 N -0.33 -5.91 4.02 -67.39 -0.27 -6.18 16 22 C 0.09 1.29 10.55 59.84 0.63 1.92 16 23 C -0.03 -0.48 6.31 -27.57 -0.17 -0.65 16 24 C -0.12 -1.54 5.86 -26.52 -0.16 -1.69 16 25 C -0.12 -1.90 5.87 -26.51 -0.16 -2.05 16 26 C -0.07 -1.28 5.02 -27.59 -0.14 -1.42 16 27 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 29 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.07 0.95 5.32 -51.93 -0.28 0.67 16 31 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 32 H 0.06 1.39 6.91 -51.93 -0.36 1.03 16 33 H 0.05 1.08 8.11 -51.93 -0.42 0.66 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.23 4.75 -51.93 -0.25 0.99 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.11 2.42 6.86 -51.92 -0.36 2.06 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -30.32 375.01 -9.49 -39.80 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.68 Total: 4.69 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -1.70 Total: -24.01 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.57 Total: -53.25 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.71 Total: -40.87 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 53.45 SS G_CDS: -0.60 Total: 52.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.32 -9.49 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601420746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.093 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds