Wall clock time and date at job start Sat Apr 11 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99682 * 2 1 4 4 N 1.46502 * 109.46865 * 125.00365 * 3 2 1 5 5 C 1.46506 * 119.99937 * 85.00033 * 4 3 2 6 6 C 1.50703 * 109.47289 * 84.99851 * 5 4 3 7 7 H 1.07994 * 119.99399 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99789 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00144 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99733 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46632 * 90.00476 * 10 8 6 12 12 H 1.48496 * 109.46690 * 210.00029 * 10 8 6 13 13 H 1.48498 * 109.47171 * 330.00226 * 10 8 6 14 14 S 1.65596 * 120.00234 * 264.99761 * 4 3 2 15 15 O 1.42102 * 106.39988 * 23.54158 * 14 4 3 16 16 O 1.42093 * 106.40335 * 156.45809 * 14 4 3 17 17 C 1.76205 * 107.21728 * 270.00185 * 14 4 3 18 18 C 1.34570 * 126.18727 * 269.70870 * 17 14 4 19 19 C 1.40495 * 108.03164 * 179.97438 * 18 17 14 20 20 N 1.30127 * 108.22834 * 0.30722 * 19 18 17 21 21 N 1.35202 * 126.18868 * 90.02418 * 17 14 4 22 22 C 1.46494 * 126.00710 * 359.91402 * 21 17 14 23 23 C 1.50948 * 123.48209 * 179.97438 * 19 18 17 24 24 C 1.53372 * 108.20576 * 343.71649 * 23 19 18 25 25 C 1.53029 * 109.75176 * 50.64122 * 24 23 19 26 26 C 1.50884 * 128.32711 * 0.95976 * 18 17 14 27 27 H 1.07997 * 120.00285 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00146 * 359.97438 * 1 2 3 29 29 H 1.07992 * 119.99842 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47887 * 5.00340 * 3 2 1 31 31 H 1.09003 * 109.47459 * 244.99867 * 3 2 1 32 32 H 1.09001 * 109.47060 * 205.00301 * 5 4 3 33 33 H 1.09004 * 109.47073 * 324.99790 * 5 4 3 34 34 H 0.96997 * 119.99752 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.47619 * 89.99663 * 22 21 17 36 36 H 1.09000 * 109.46959 * 210.00331 * 22 21 17 37 37 H 1.09001 * 109.46873 * 329.99653 * 22 21 17 38 38 H 1.09000 * 109.71664 * 103.38769 * 23 19 18 39 39 H 1.09002 * 109.71708 * 223.99275 * 23 19 18 40 40 H 1.09002 * 109.42586 * 170.73035 * 24 23 19 41 41 H 1.09006 * 109.42430 * 290.55620 * 24 23 19 42 42 H 1.09004 * 109.42403 * 48.33749 * 25 24 23 43 43 H 1.08994 * 109.43287 * 168.18571 * 25 24 23 44 44 H 1.09009 * 109.87073 * 43.06399 * 26 18 17 45 45 H 1.08998 * 109.53711 * 282.47620 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3218 0.7268 1.0023 6 6 5.2698 1.7227 0.3855 7 1 4.9183 2.7080 0.1170 8 6 6.5860 1.3764 0.1650 9 7 7.0140 0.1767 0.4925 10 14 7.7610 2.6107 -0.6001 11 1 8.4095 3.4071 0.4724 12 1 8.7999 1.8887 -1.3776 13 1 7.0075 3.5172 -1.5032 14 16 2.5444 2.0461 2.5562 15 8 1.1237 2.0287 2.5832 16 8 3.3481 1.4590 3.5704 17 6 3.0196 3.7403 2.4631 18 6 4.1985 4.2575 2.8551 19 6 4.1700 5.6405 2.6090 20 7 3.0124 5.9386 2.0946 21 7 2.2636 4.7566 1.9903 22 6 0.9019 4.6437 1.4620 23 6 5.3210 6.5657 2.9211 24 6 6.2736 5.8394 3.8789 25 6 6.6117 4.4551 3.3210 26 6 5.3885 3.5370 3.4392 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 4.6874 0.4393 1.9880 33 1 4.2584 -0.1564 0.3665 34 1 7.9399 -0.0671 0.3370 35 1 0.1855 4.7723 2.2733 36 1 0.7396 5.4141 0.7083 37 1 0.7675 3.6604 1.0112 38 1 5.8479 6.8204 2.0015 39 1 4.9455 7.4736 3.3932 40 1 7.1897 6.4197 3.9884 41 1 5.7956 5.7310 4.8525 42 1 6.8969 4.5464 2.2729 43 1 7.4408 4.0291 3.8858 44 1 5.5682 2.6127 2.8900 45 1 5.1984 3.3103 4.4883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601420746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:52 Heat of formation + Delta-G solvation = -0.450602 kcal Electronic energy + Delta-G solvation = -29784.587704 eV Core-core repulsion = 25930.411250 eV Total energy + Delta-G solvation = -3854.176454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57709 -38.67770 -38.02201 -37.55329 -37.05497 -35.03916 -33.86098 -33.57690 -32.82532 -29.73421 -29.26855 -28.07921 -26.60005 -24.43575 -24.21589 -23.18553 -22.69696 -20.88115 -19.96319 -19.78612 -18.88358 -18.55454 -18.07599 -17.27806 -16.80082 -16.63537 -16.36647 -15.78546 -15.70801 -15.40807 -15.24420 -14.84347 -14.77344 -14.54050 -14.23548 -13.91983 -13.82167 -13.71232 -13.51037 -13.32175 -13.15546 -13.11287 -12.90739 -12.83503 -12.73259 -12.58712 -12.40545 -12.30920 -12.08648 -11.93142 -11.76694 -11.69079 -11.60748 -11.24888 -10.63578 -10.55190 -10.28370 -9.89759 -9.43802 -8.15867 -6.26922 -0.77110 0.18863 1.30867 1.36233 1.40011 1.42303 1.47511 1.49961 2.04936 2.42669 2.58467 3.12673 3.17214 3.33929 3.77151 3.86186 3.97447 4.06626 4.07290 4.12001 4.23748 4.27392 4.35610 4.48896 4.54926 4.55381 4.64120 4.67872 4.76538 4.83783 4.96890 5.04675 5.10931 5.15588 5.22296 5.27832 5.34838 5.42625 5.46953 5.61199 5.66350 5.72235 5.75540 5.82926 5.95199 6.09651 6.39520 6.81675 7.42106 8.92102 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.007552 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.417476 B = 3706.757578 C = 5615.382849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.193 4.193 3 C 0.149 3.851 4 N -0.974 5.974 5 C 0.258 3.742 6 C -0.533 4.533 7 H 0.055 0.945 8 C 0.029 3.971 9 N -0.919 5.919 10 Si 0.935 3.065 11 H -0.262 1.262 12 H -0.284 1.284 13 H -0.275 1.275 14 S 2.714 3.286 15 O -0.963 6.963 16 O -0.968 6.968 17 C -0.498 4.498 18 C -0.111 4.111 19 C 0.049 3.951 20 N -0.269 5.269 21 N -0.329 5.329 22 C 0.078 3.922 23 C -0.036 4.036 24 C -0.109 4.109 25 C -0.118 4.118 26 C -0.069 4.069 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.028 0.972 33 H 0.033 0.967 34 H 0.266 0.734 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 9.114 1.979 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.213 4.213 3 C 0.024 3.976 4 N -0.813 5.813 5 C 0.135 3.865 6 C -0.572 4.572 7 H 0.073 0.927 8 C -0.171 4.171 9 N -0.558 5.558 10 Si 0.761 3.239 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.200 1.200 14 S 2.800 3.200 15 O -0.953 6.953 16 O -0.958 6.958 17 C -0.705 4.705 18 C -0.125 4.125 19 C -0.117 4.117 20 N -0.094 5.094 21 N -0.114 5.114 22 C -0.061 4.061 23 C -0.074 4.074 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.107 4.107 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.094 9.528 2.153 13.346 hybrid contribution 1.527 -0.046 -0.631 1.653 sum -7.567 9.482 1.522 12.227 Atomic orbital electron populations 1.24084 0.94962 1.03362 0.97483 1.23296 0.96833 0.98596 1.02585 1.20505 0.90659 0.96271 0.90118 1.57349 1.25074 1.69452 1.29459 1.18907 0.76597 0.93512 0.97455 1.21562 0.94729 0.99596 1.41300 0.92704 1.25490 0.99364 0.96489 0.95800 1.70018 1.17094 1.20381 1.48336 0.85908 0.79208 0.79693 0.79141 1.18719 1.20993 1.19952 1.01378 0.72830 0.72381 0.73428 1.93511 1.28012 1.86957 1.86781 1.93547 1.70997 1.74747 1.56468 1.33259 1.03132 1.18649 1.15444 1.20332 0.94693 0.94465 1.03010 1.23094 0.95065 0.94626 0.98945 1.76724 1.05169 1.06871 1.20596 1.48306 1.13453 1.02276 1.47402 1.22539 0.76223 1.05685 1.01659 1.20344 0.90077 0.95847 1.01175 1.21606 0.99957 0.94847 0.98308 1.21588 0.96653 0.95870 1.01408 1.20441 0.91247 0.98484 1.00561 0.86547 0.87130 0.87673 0.89335 0.89354 0.95364 0.94908 0.92475 0.88385 0.86467 0.88496 0.89114 0.87736 0.87845 0.90925 0.93141 0.90002 0.90896 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.19 -5.73 9.84 25.64 0.25 -5.48 16 3 C 0.15 4.90 5.78 85.63 0.50 5.39 16 4 N -0.97 -39.30 2.75 -523.88 -1.44 -40.74 16 5 C 0.26 12.54 5.43 85.63 0.47 13.00 16 6 C -0.53 -27.25 8.40 25.60 0.22 -27.04 16 7 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 8 C 0.03 1.53 5.46 84.65 0.46 1.99 16 9 N -0.92 -51.09 13.29 21.45 0.28 -50.81 16 10 Si 0.93 41.55 29.54 68.60 2.03 43.58 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 S 2.71 108.80 5.57 -56.49 -0.31 108.48 16 15 O -0.96 -35.77 14.79 -128.00 -1.89 -37.66 16 16 O -0.97 -44.62 15.04 -128.00 -1.93 -46.54 16 17 C -0.50 -19.41 6.99 83.33 0.58 -18.83 16 18 C -0.11 -4.32 5.86 -20.10 -0.12 -4.43 16 19 C 0.05 1.71 7.10 43.44 0.31 2.02 16 20 N -0.27 -9.49 12.56 -47.13 -0.59 -10.08 16 21 N -0.33 -11.38 4.02 -367.13 -1.48 -12.86 16 22 C 0.08 1.97 10.55 127.77 1.35 3.32 16 23 C -0.04 -0.90 6.31 30.05 0.19 -0.71 16 24 C -0.11 -2.57 5.86 30.73 0.18 -2.39 16 25 C -0.12 -3.70 5.87 30.74 0.18 -3.52 16 26 C -0.07 -2.68 5.02 30.04 0.15 -2.53 16 27 H 0.12 2.30 8.06 -2.91 -0.02 2.27 16 28 H 0.11 2.32 7.84 -2.91 -0.02 2.29 16 29 H 0.11 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.09 2.44 5.32 -2.39 -0.01 2.43 16 31 H 0.09 2.95 8.11 -2.39 -0.02 2.94 16 32 H 0.03 1.52 6.91 -2.39 -0.02 1.51 16 33 H 0.03 1.66 8.11 -2.38 -0.02 1.64 16 34 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.10 2.35 4.75 -2.39 -0.01 2.34 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.63 8.10 -2.38 -0.02 1.61 16 42 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.07 3.36 6.86 -2.38 -0.02 3.35 16 45 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -66.46 375.01 1.34 -65.13 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.99 Total: 23.57 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 5.68 Total: -42.07 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -3.23 Total: -114.48 kcal Atomic # 8 Polarization: -80.38 SS G_CDS: -3.82 Total: -84.20 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 108.80 SS G_CDS: -0.31 Total: 108.48 kcal Total: -66.46 1.34 -65.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601420746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.677 kcal (2) G-P(sol) polarization free energy of solvation -66.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds