Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99972 * 2 1 4 4 C 1.50694 * 109.47115 * 84.99899 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 S 1.65601 * 119.99689 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.40327 * 23.54214 * 12 2 1 14 14 O 1.42104 * 106.39941 * 156.46006 * 12 2 1 15 15 N 1.65595 * 107.21482 * 269.99791 * 12 2 1 16 16 C 1.46927 * 120.62774 * 90.00730 * 15 12 2 17 17 C 1.53197 * 108.77851 * 126.36674 * 16 15 12 18 18 C 1.53043 * 109.31139 * 54.62797 * 17 16 15 19 19 C 1.53035 * 109.54021 * 298.64005 * 18 17 16 20 20 H 1.08998 * 109.49686 * 301.40901 * 19 18 17 21 21 C 1.50705 * 109.49634 * 181.34803 * 19 18 17 22 22 C 1.38645 * 120.78978 * 299.71992 * 21 19 18 23 23 C 1.38203 * 119.16132 * 179.79974 * 22 21 19 24 24 N 1.31870 * 120.76643 * 0.48098 * 23 22 21 25 25 C 1.31868 * 121.72291 * 359.74792 * 24 23 22 26 26 C 1.38209 * 120.76647 * 0.02562 * 25 24 23 27 27 C 1.46921 * 120.63403 * 269.71979 * 15 12 2 28 28 H 1.09004 * 109.47130 * 89.99941 * 1 2 3 29 29 H 1.09000 * 109.47503 * 209.99870 * 1 2 3 30 30 H 1.09000 * 109.47371 * 330.00386 * 1 2 3 31 31 H 1.09007 * 109.47078 * 324.99538 * 3 2 1 32 32 H 1.09003 * 109.46733 * 205.00261 * 3 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.58622 * 246.14830 * 16 15 12 35 35 H 1.08997 * 109.59179 * 6.57834 * 16 15 12 36 36 H 1.08994 * 109.49908 * 174.58301 * 17 16 15 37 37 H 1.08997 * 109.49399 * 294.68200 * 17 16 15 38 38 H 1.09001 * 109.45682 * 58.66438 * 18 17 16 39 39 H 1.09000 * 109.45521 * 178.61268 * 18 17 16 40 40 H 1.08003 * 120.41806 * 0.02562 * 22 21 19 41 41 H 1.08002 * 119.62051 * 180.20693 * 23 22 21 42 42 H 1.08004 * 119.61969 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.41970 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.58671 * 353.42124 * 27 15 12 45 45 H 1.09000 * 109.58819 * 113.84496 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4153 5 1 1.9282 1.1939 2.2331 6 6 2.9997 2.9509 1.6663 7 7 3.5025 3.6475 0.6704 8 14 3.1775 3.5672 3.4207 9 1 3.9201 4.8533 3.4207 10 1 1.8309 3.7727 4.0120 11 1 3.9233 2.5655 4.2241 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8579 1.5826 16 6 1.5539 -2.6817 2.2980 17 6 2.2705 -3.8947 2.8997 18 6 3.4372 -3.4148 3.7661 19 6 4.4359 -2.6450 2.8990 20 1 4.7945 -3.2902 2.0971 21 6 5.6005 -2.2015 3.7464 22 6 5.4084 -1.3631 4.8338 23 6 6.4999 -0.9806 5.5904 24 7 7.7130 -1.3960 5.2826 25 6 7.9336 -2.1900 4.2531 26 6 6.8904 -2.6175 3.4536 27 6 3.7466 -1.4226 2.2956 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6501 2.0043 -0.5896 32 1 3.1858 1.1176 -0.4344 33 1 3.9653 4.4815 0.8470 34 1 1.0967 -2.0951 3.0948 35 1 0.7854 -3.0192 1.6027 36 1 1.5713 -4.4628 3.5132 37 1 2.6494 -4.5281 2.0977 38 1 3.0604 -2.7616 4.5531 39 1 3.9337 -4.2750 4.2153 40 1 4.4178 -1.0162 5.0886 41 1 6.3583 -0.3304 6.4411 42 1 8.9412 -2.5100 4.0321 43 1 7.0775 -3.2673 2.6116 44 1 4.4244 -0.9295 1.5987 45 1 3.4718 -0.7311 3.0922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601450225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -45.958539 kcal Electronic energy + Delta-G solvation = -28992.762645 eV Core-core repulsion = 25136.612819 eV Total energy + Delta-G solvation = -3856.149826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36760 -38.30485 -36.77069 -35.50772 -35.26339 -33.96950 -32.52044 -31.89741 -31.19122 -29.77386 -27.82164 -25.13588 -24.55089 -24.19023 -23.46324 -22.29744 -21.84016 -20.11374 -18.38939 -17.46970 -16.81327 -16.63316 -16.42897 -16.19939 -15.70198 -15.52252 -14.85127 -14.52183 -14.31498 -14.05692 -13.92456 -13.68797 -13.52794 -13.37530 -13.29756 -13.18243 -12.42114 -12.38366 -12.19846 -11.86034 -11.75159 -11.68239 -11.47171 -11.24528 -11.19377 -11.16258 -10.94601 -10.83472 -10.69812 -10.58983 -10.50601 -10.11432 -9.83576 -9.54262 -9.42215 -9.11903 -8.71792 -8.52527 -8.06893 -6.14657 -4.21711 1.14583 1.17382 1.31587 3.21743 3.27321 3.29057 3.40195 3.83541 4.04555 4.32317 4.44204 4.48914 4.65537 4.78216 4.89741 5.00295 5.02511 5.14513 5.17787 5.19520 5.26252 5.37307 5.43176 5.51918 5.56355 5.67209 5.78477 5.80437 5.83919 5.90427 6.01651 6.03035 6.05561 6.11456 6.19887 6.25546 6.40431 6.46851 6.54405 6.72019 6.85018 7.29958 7.39544 7.59505 7.81815 7.99109 8.11174 8.82749 9.44372 10.93347 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.005987 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.319139 B = 4675.437779 C = 6747.646039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.244 3.756 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.274 1.274 12 S 2.786 3.214 13 O -0.998 6.998 14 O -0.976 6.976 15 N -1.002 6.002 16 C 0.118 3.882 17 C -0.130 4.130 18 C -0.106 4.106 19 C -0.065 4.065 20 H 0.085 0.915 21 C -0.025 4.025 22 C -0.163 4.163 23 C 0.098 3.902 24 N -0.492 5.492 25 C 0.096 3.904 26 C -0.168 4.168 27 C 0.137 3.863 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.265 0.735 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 -13.429 7.364 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.839 5.839 3 C 0.122 3.878 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.199 1.199 12 S 2.795 3.205 13 O -0.982 6.982 14 O -0.960 6.960 15 N -0.840 5.840 16 C -0.008 4.008 17 C -0.169 4.169 18 C -0.143 4.143 19 C -0.086 4.086 20 H 0.104 0.896 21 C -0.034 4.034 22 C -0.182 4.182 23 C -0.058 4.058 24 N -0.201 5.201 25 C -0.060 4.060 26 C -0.188 4.188 27 C 0.011 3.989 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.152 0.848 44 H 0.117 0.883 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.492 -13.436 7.026 15.170 hybrid contribution -0.729 0.580 0.822 1.243 sum -0.238 -12.856 7.848 15.064 Atomic orbital electron populations 1.21215 0.80134 1.02028 1.00617 1.57668 1.14205 1.23494 1.88501 1.19220 0.92142 0.78874 0.97568 1.21483 1.36710 1.06861 0.92841 0.92018 1.24951 0.95199 0.96510 0.97139 1.69920 1.36611 1.15159 1.30975 0.86670 0.78232 0.78375 0.84844 1.21180 1.20240 1.19942 1.01757 0.73131 0.72687 0.72921 1.93522 1.67426 1.60400 1.76896 1.93567 1.40777 1.85275 1.76386 1.58159 1.28829 1.64958 1.32049 1.21376 0.90752 0.91380 0.97250 1.21863 0.97711 0.97670 0.99628 1.21517 0.95510 0.99633 0.97675 1.20535 0.92776 0.98298 0.96954 0.89641 1.20197 0.94628 0.94299 0.94305 1.22060 1.01064 0.98831 0.96284 1.22725 0.87694 0.96831 0.98553 1.67650 1.24341 1.10927 1.17206 1.22707 0.99234 0.93435 0.90662 1.22082 0.93025 1.02278 1.01385 1.21266 0.85423 0.94203 0.98032 0.93758 0.93003 0.90793 0.94455 0.93188 0.92488 0.91525 0.89308 0.90754 0.91437 0.91336 0.91808 0.84663 0.82927 0.82951 0.84821 0.88301 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.80 10.31 59.85 0.62 2.42 16 2 N -1.00 -20.38 3.23 -123.05 -0.40 -20.78 16 3 C 0.24 5.99 5.41 -5.20 -0.03 5.96 16 4 C -0.54 -13.72 9.38 -34.44 -0.32 -14.04 16 5 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 8 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 S 2.79 54.62 6.11 -107.50 -0.66 53.97 16 13 O -1.00 -19.90 15.80 -57.17 -0.90 -20.80 16 14 O -0.98 -22.28 15.27 -57.17 -0.87 -23.15 16 15 N -1.00 -16.15 3.35 -113.77 -0.38 -16.53 16 16 C 0.12 1.50 6.48 -3.71 -0.02 1.47 16 17 C -0.13 -1.34 6.08 -26.61 -0.16 -1.51 16 18 C -0.11 -1.10 4.97 -26.69 -0.13 -1.24 16 19 C -0.07 -0.83 2.52 -91.88 -0.23 -1.06 16 20 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 21 C -0.03 -0.33 4.80 -104.32 -0.50 -0.83 16 22 C -0.16 -2.08 8.80 -39.44 -0.35 -2.43 16 23 C 0.10 1.28 11.18 -17.55 -0.20 1.08 16 24 N -0.49 -6.87 10.36 -13.25 -0.14 -7.00 16 25 C 0.10 1.17 11.18 -17.55 -0.20 0.98 16 26 C -0.17 -2.01 9.77 -39.44 -0.39 -2.40 16 27 C 0.14 2.19 5.63 -3.94 -0.02 2.17 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 30 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.04 0.96 8.11 -51.92 -0.42 0.54 16 32 H 0.05 1.35 6.92 -51.93 -0.36 1.00 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.12 6.92 -51.93 -0.36 0.76 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.69 7.55 -51.93 -0.39 0.30 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.14 1.58 7.26 -52.48 -0.38 1.20 16 41 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.13 1.32 8.01 -52.49 -0.42 0.90 16 44 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 45 H 0.07 1.21 7.29 -51.93 -0.38 0.83 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -32.09 375.95 -10.81 -42.90 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.81 Total: 2.66 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.03 Total: -7.78 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -0.18 Total: -68.68 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.78 Total: -43.95 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.66 Total: 53.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.09 -10.81 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601450225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.058 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds