Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46509 * 109.46710 * 2 1 4 4 C 1.46493 * 120.00256 * 274.99739 * 3 2 1 5 5 C 1.50696 * 109.47297 * 275.00202 * 4 3 2 6 6 H 1.08000 * 120.00075 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00425 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00502 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46941 * 59.99972 * 9 7 5 11 11 H 1.48498 * 109.47354 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46752 * 300.00357 * 9 7 5 13 13 S 1.65598 * 119.99628 * 94.99883 * 3 2 1 14 14 O 1.42100 * 106.40556 * 336.46127 * 13 3 2 15 15 O 1.42104 * 106.40140 * 203.53740 * 13 3 2 16 16 N 1.65600 * 107.21872 * 89.99935 * 13 3 2 17 17 C 1.47019 * 125.65047 * 90.02216 * 16 13 3 18 18 C 1.54321 * 107.27531 * 178.90679 * 17 16 13 19 19 C 1.55157 * 103.10033 * 337.71659 * 18 17 16 20 20 H 1.09001 * 111.00741 * 277.51995 * 19 18 17 21 21 C 1.50699 * 111.00343 * 153.66431 * 19 18 17 22 22 C 1.38654 * 120.78911 * 301.17124 * 21 19 18 23 23 C 1.38208 * 119.15909 * 179.75507 * 22 21 19 24 24 N 1.31866 * 120.76473 * 0.53827 * 23 22 21 25 25 C 1.31872 * 121.72611 * 359.73653 * 24 23 22 26 26 C 1.38198 * 120.76359 * 359.97438 * 25 24 23 27 27 C 1.47431 * 125.64810 * 269.98287 * 16 13 3 28 28 H 1.08992 * 109.47592 * 299.99662 * 1 2 3 29 29 H 1.09007 * 109.47013 * 59.99890 * 1 2 3 30 30 H 1.09006 * 109.46751 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47592 * 240.00338 * 2 1 3 32 32 H 1.08997 * 109.47016 * 120.00004 * 2 1 3 33 33 H 1.09003 * 109.46989 * 35.00368 * 4 3 2 34 34 H 1.08999 * 109.47294 * 155.00053 * 4 3 2 35 35 H 0.96997 * 120.00565 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.88251 * 59.48420 * 17 16 13 37 37 H 1.09004 * 109.88394 * 298.32333 * 17 16 13 38 38 H 1.09002 * 110.72109 * 96.17040 * 18 17 16 39 39 H 1.09003 * 110.72356 * 219.26865 * 18 17 16 40 40 H 1.07997 * 120.41790 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.61328 * 180.25594 * 23 22 21 42 42 H 1.07997 * 119.61382 * 180.02562 * 25 24 23 43 43 H 1.08007 * 120.41756 * 180.02562 * 26 25 24 44 44 H 1.08999 * 110.36190 * 322.99782 * 27 16 13 45 45 H 1.08998 * 110.36491 * 85.21461 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.4947 1.7890 -1.8822 6 1 4.1720 1.1113 -1.3839 7 6 3.8525 2.3608 -3.0847 8 7 3.0276 3.1857 -3.6918 9 14 5.5090 1.9639 -3.8516 10 1 5.5987 0.5039 -4.1079 11 1 5.6509 2.7014 -5.1327 12 1 6.5943 2.3712 -2.9236 13 16 2.4120 2.1203 1.4287 14 8 1.6867 1.4415 2.4448 15 8 2.3055 3.5187 1.1999 16 7 4.0142 1.8138 1.7138 17 6 5.1390 2.6483 1.2668 18 6 6.4340 1.9879 1.7848 19 6 5.9374 1.1273 2.9765 20 1 5.8353 1.7307 3.8785 21 6 6.8534 -0.0455 3.2145 22 6 7.0832 -0.9805 2.2169 23 6 7.9335 -2.0402 2.4700 24 7 8.5143 -2.1729 3.6465 25 6 8.3145 -1.3062 4.6201 26 6 7.4818 -0.2183 4.4383 27 6 4.5490 0.6594 2.4587 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3617 1.8098 -1.9452 34 1 2.0921 3.1804 -1.0755 35 1 3.2793 3.5883 -4.5376 36 1 5.0435 3.6521 1.6809 37 1 5.1565 2.6946 0.1778 38 1 6.8809 1.3590 1.0148 39 1 7.1432 2.7430 2.1237 40 1 6.6071 -0.8796 1.2527 41 1 8.1210 -2.7705 1.6968 42 1 8.8081 -1.4477 5.5702 43 1 7.3226 0.4884 5.2394 44 1 3.8959 0.4126 3.2958 45 1 4.6590 -0.2004 1.7979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601456179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = -42.483042 kcal Electronic energy + Delta-G solvation = -28551.387041 eV Core-core repulsion = 24695.387924 eV Total energy + Delta-G solvation = -3855.999118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49683 -38.22737 -36.71654 -36.04778 -35.25340 -33.54682 -32.75444 -31.37081 -30.03804 -29.95055 -28.57437 -26.64830 -24.09393 -23.44761 -23.16935 -22.09986 -21.62890 -20.56245 -18.50540 -17.37814 -17.26141 -16.80830 -16.42693 -16.25526 -15.72978 -15.60111 -15.01126 -14.61748 -14.08206 -14.05855 -13.85520 -13.59575 -13.37082 -13.31014 -13.15631 -12.91787 -12.60982 -12.11066 -12.02827 -11.88041 -11.76404 -11.71236 -11.61163 -11.38471 -11.30155 -11.17146 -11.08065 -11.01501 -10.67141 -10.53006 -10.44013 -10.10106 -9.82489 -9.63591 -9.58430 -9.31000 -8.68536 -8.53281 -8.09763 -6.15264 -4.22179 0.97899 1.04612 1.20323 3.20666 3.26832 3.27941 3.43596 3.62963 4.04291 4.30123 4.31165 4.35125 4.49738 4.56917 4.79342 4.94133 4.99495 5.04469 5.09532 5.18662 5.38149 5.40029 5.45827 5.49809 5.58369 5.67637 5.73520 5.76800 5.80210 5.87798 5.92827 6.01787 6.06546 6.24225 6.29888 6.35157 6.43558 6.53932 6.57487 6.63512 6.74981 7.32181 7.40742 7.62154 7.81239 7.81594 8.11404 8.82294 9.43584 10.92718 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.004553 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.067038 B = 6148.702728 C = 7536.116796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.245 3.755 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.798 3.202 14 O -0.995 6.995 15 O -0.973 6.973 16 N -1.015 6.015 17 C 0.118 3.882 18 C -0.117 4.117 19 C -0.065 4.065 20 H 0.096 0.904 21 C -0.022 4.022 22 C -0.166 4.166 23 C 0.100 3.900 24 N -0.492 5.492 25 C 0.097 3.903 26 C -0.170 4.170 27 C 0.130 3.870 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.954 -7.003 12.649 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 S 2.808 3.192 14 O -0.980 6.980 15 O -0.958 6.958 16 N -0.854 5.854 17 C -0.007 4.007 18 C -0.156 4.156 19 C -0.085 4.085 20 H 0.115 0.885 21 C -0.031 4.031 22 C -0.185 4.185 23 C -0.057 4.057 24 N -0.201 5.201 25 C -0.060 4.060 26 C -0.189 4.189 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.157 0.843 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.152 0.848 44 H 0.098 0.902 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.785 -7.043 13.131 16.373 hybrid contribution 0.623 0.302 -1.063 1.268 sum 7.408 -6.741 12.068 15.683 Atomic orbital electron populations 1.22206 0.96874 1.01422 1.02408 1.20970 0.93709 0.82931 1.01999 1.57805 1.78116 1.22960 1.24304 1.19191 0.97337 0.92198 0.78969 1.21493 1.02244 1.28087 1.06075 0.91991 1.24949 0.97158 0.94827 0.96854 1.69917 1.35979 1.29653 1.17086 0.86665 0.84151 0.78469 0.78752 1.20247 1.21198 1.20056 1.01388 0.71675 0.73342 0.72798 1.93532 1.69996 1.76599 1.57838 1.93575 1.85476 1.30729 1.85987 1.59114 1.23861 1.34243 1.68133 1.21754 0.84024 0.93444 1.01467 1.22739 0.97360 0.99035 0.96460 1.21487 0.93312 0.93831 0.99886 0.88547 1.20106 0.94865 0.94838 0.93289 1.22143 1.00104 0.95585 1.00714 1.22766 0.92509 0.96240 0.94151 1.67669 1.22816 1.28534 1.01110 1.22723 0.95236 0.90252 0.97815 1.22066 0.99138 0.99977 0.97757 1.22040 0.93416 0.88828 0.95384 0.92662 0.92035 0.92314 0.90224 0.92097 0.94383 0.93221 0.92497 0.91531 0.89214 0.90256 0.90157 0.84292 0.82749 0.82934 0.84807 0.90198 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 37.16 0.38 -2.28 16 2 C 0.13 2.23 6.06 -4.04 -0.02 2.21 16 3 N -0.99 -20.05 2.82 -115.67 -0.33 -20.37 16 4 C 0.25 5.92 5.43 -5.20 -0.03 5.90 16 5 C -0.54 -13.52 8.93 -34.44 -0.31 -13.82 16 6 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 9 Si 0.89 19.93 29.54 -169.99 -5.02 14.90 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 S 2.80 55.41 6.31 -107.50 -0.68 54.73 16 14 O -1.00 -20.07 16.43 -57.17 -0.94 -21.01 16 15 O -0.97 -22.54 16.27 -57.17 -0.93 -23.47 16 16 N -1.02 -16.62 3.76 -111.13 -0.42 -17.04 16 17 C 0.12 1.83 6.99 -3.07 -0.02 1.80 16 18 C -0.12 -1.37 6.36 -24.90 -0.16 -1.53 16 19 C -0.07 -0.71 3.31 -89.36 -0.30 -1.00 16 20 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 21 C -0.02 -0.23 5.02 -104.32 -0.52 -0.75 16 22 C -0.17 -1.73 8.42 -39.44 -0.33 -2.06 16 23 C 0.10 1.04 11.18 -17.55 -0.20 0.85 16 24 N -0.49 -5.63 10.36 -13.26 -0.14 -5.77 16 25 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 26 C -0.17 -1.55 9.78 -39.44 -0.39 -1.93 16 27 C 0.13 1.70 6.54 -2.26 -0.01 1.69 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 32 H 0.06 0.93 7.61 -51.93 -0.40 0.53 16 33 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.60 7.69 -51.93 -0.40 1.20 16 38 H 0.08 0.93 7.20 -51.93 -0.37 0.56 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.14 1.39 7.17 -52.49 -0.38 1.02 16 41 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.13 0.92 8.04 -52.48 -0.42 0.50 16 44 H 0.08 1.03 7.78 -51.93 -0.40 0.63 16 45 H 0.07 0.84 6.83 -51.93 -0.35 0.48 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -31.74 381.42 -11.02 -42.75 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.85 Total: 2.17 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.20 Total: -8.61 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -0.15 Total: -67.22 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.87 Total: -44.48 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 55.41 SS G_CDS: -0.68 Total: 54.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.74 -11.02 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601456179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.268 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds