Wall clock time and date at job start Sat Apr 11 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46907 * 2 1 4 4 C 1.46497 * 120.00278 * 84.99795 * 3 2 1 5 5 C 1.50700 * 109.47128 * 84.99849 * 4 3 2 6 6 H 1.07999 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 359.72512 * 7 5 4 10 10 H 1.48498 * 109.46909 * 90.00086 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99996 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00101 * 9 7 5 13 13 S 1.65600 * 120.00164 * 264.99830 * 3 2 1 14 14 O 1.42104 * 106.40028 * 23.53860 * 13 3 2 15 15 O 1.42099 * 106.40256 * 156.45712 * 13 3 2 16 16 N 1.65598 * 107.21959 * 270.00045 * 13 3 2 17 17 C 1.47419 * 125.65063 * 269.69173 * 16 13 3 18 18 C 1.55128 * 104.72501 * 155.81279 * 17 16 13 19 19 C 1.55162 * 101.48465 * 37.29628 * 18 17 16 20 20 H 1.09002 * 110.71779 * 82.69389 * 19 18 17 21 21 C 1.50694 * 110.87229 * 205.89599 * 19 18 17 22 22 C 1.38655 * 120.78718 * 53.33003 * 21 19 18 23 23 C 1.38213 * 119.15701 * 179.75423 * 22 21 19 24 24 N 1.31861 * 120.76285 * 0.53370 * 23 22 21 25 25 C 1.31869 * 121.73246 * 359.73686 * 24 23 22 26 26 C 1.38205 * 120.76103 * 359.97438 * 25 24 23 27 27 C 1.47025 * 125.64844 * 89.99505 * 16 13 3 28 28 H 1.09002 * 109.47355 * 300.00331 * 1 2 3 29 29 H 1.09002 * 109.46738 * 60.00231 * 1 2 3 30 30 H 1.08995 * 109.46818 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47174 * 240.00405 * 2 1 3 32 32 H 1.08996 * 109.47087 * 119.99538 * 2 1 3 33 33 H 1.09004 * 109.47268 * 324.99989 * 4 3 2 34 34 H 1.08997 * 109.47471 * 205.00396 * 4 3 2 35 35 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.36620 * 274.74490 * 17 16 13 37 37 H 1.09003 * 110.36242 * 37.06450 * 17 16 13 38 38 H 1.08998 * 111.19223 * 279.19483 * 18 17 16 39 39 H 1.09003 * 110.93614 * 155.28797 * 18 17 16 40 40 H 1.07994 * 120.42089 * 359.97438 * 22 21 19 41 41 H 1.08002 * 119.61309 * 180.29503 * 23 22 21 42 42 H 1.08001 * 119.62141 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.41800 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.88119 * 300.44394 * 27 16 13 45 45 H 1.09002 * 109.87834 * 61.45190 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 1.2638 5 6 3.4947 1.7890 1.8823 6 1 4.1723 1.1118 1.3836 7 6 3.8524 2.3608 3.0849 8 7 5.0190 2.0821 3.6244 9 14 2.6835 3.5380 3.9437 10 1 1.7935 2.7748 4.8551 11 1 3.4652 4.5270 4.7286 12 1 1.8627 4.2479 2.9300 13 16 2.4122 2.1203 -1.4287 14 8 1.6869 1.4415 -2.4448 15 8 2.3056 3.5187 -1.1998 16 7 4.0144 1.8139 -1.7137 17 6 5.1420 2.6537 -1.2704 18 6 6.3544 1.6877 -1.2128 19 6 6.0863 0.7818 -2.4436 20 1 6.4437 1.2568 -3.3573 21 6 6.7246 -0.5714 -2.2635 22 6 6.4721 -1.3301 -1.1308 23 6 7.0716 -2.5689 -1.0027 24 7 7.8828 -3.0254 -1.9366 25 6 8.1501 -2.3291 -3.0241 26 6 7.5828 -1.0848 -3.2239 27 6 4.5477 0.6624 -2.4562 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.3617 1.8099 1.9453 34 1 2.0920 3.1803 1.0755 35 1 5.2705 2.4841 4.4706 36 1 5.3247 3.4532 -1.9883 37 1 4.9406 3.0684 -0.2826 38 1 6.3511 1.1058 -0.2912 39 1 7.2920 2.2323 -1.3254 40 1 5.8126 -0.9594 -0.3602 41 1 6.8763 -3.1681 -0.1256 42 1 8.8201 -2.7358 -3.7672 43 1 7.8059 -0.5190 -4.1164 44 1 4.2439 -0.2648 -1.9705 45 1 4.1805 0.6808 -3.4823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601456180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:06 Heat of formation + Delta-G solvation = -37.862681 kcal Electronic energy + Delta-G solvation = -28867.593574 eV Core-core repulsion = 25011.794810 eV Total energy + Delta-G solvation = -3855.798764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.37068 -38.15737 -36.80049 -36.20740 -35.34236 -33.43473 -32.69549 -31.21098 -30.28306 -29.89198 -28.52961 -27.18149 -23.88022 -23.36909 -22.96522 -22.10466 -21.47161 -20.40371 -18.51171 -17.45680 -17.25512 -16.88119 -16.66690 -16.22949 -15.72734 -15.48684 -15.06736 -14.42756 -14.22470 -13.89282 -13.67885 -13.52092 -13.47746 -13.37223 -12.96143 -12.74829 -12.61111 -12.41821 -12.14324 -11.93154 -11.77465 -11.68555 -11.61687 -11.50714 -11.27988 -11.19409 -11.07674 -11.03539 -10.64138 -10.54385 -10.40217 -10.17823 -9.65070 -9.49809 -9.45601 -9.15538 -8.71967 -8.68064 -8.16740 -6.21843 -4.21973 1.07882 1.13782 1.24348 3.20862 3.28812 3.35025 3.37599 3.78059 3.98838 4.30733 4.41730 4.46138 4.59010 4.64648 4.89922 5.01845 5.10767 5.12070 5.16771 5.22559 5.30643 5.48459 5.55830 5.64209 5.65820 5.69102 5.71553 5.81040 5.88260 5.97086 6.01240 6.05137 6.11185 6.20371 6.34225 6.42224 6.48583 6.50018 6.54049 6.68862 6.71363 6.81888 7.08812 7.36903 7.49715 7.96312 8.35418 8.80870 9.39593 10.89968 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.004672 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.539941 B = 5991.744040 C = 6955.765670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.129 3.871 3 N -0.986 5.986 4 C 0.213 3.787 5 C -0.540 4.540 6 H 0.082 0.918 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.865 3.135 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.261 1.261 13 S 2.800 3.200 14 O -0.992 6.992 15 O -0.976 6.976 16 N -1.014 6.014 17 C 0.124 3.876 18 C -0.117 4.117 19 C -0.063 4.063 20 H 0.093 0.907 21 C -0.025 4.025 22 C -0.160 4.160 23 C 0.100 3.900 24 N -0.492 5.492 25 C 0.094 3.906 26 C -0.171 4.171 27 C 0.135 3.865 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.265 0.735 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.132 0.868 44 H 0.064 0.936 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -5.237 -11.429 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.826 5.826 4 C 0.089 3.911 5 C -0.579 4.579 6 H 0.100 0.900 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.691 3.309 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.185 1.185 13 S 2.809 3.191 14 O -0.976 6.976 15 O -0.960 6.960 16 N -0.852 5.852 17 C -0.001 4.001 18 C -0.156 4.156 19 C -0.083 4.083 20 H 0.112 0.888 21 C -0.034 4.034 22 C -0.179 4.179 23 C -0.056 4.056 24 N -0.201 5.201 25 C -0.063 4.063 26 C -0.191 4.191 27 C 0.009 3.991 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.161 0.839 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.150 0.850 44 H 0.082 0.918 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.463 -5.472 -11.689 13.139 hybrid contribution -0.595 1.174 0.859 1.572 sum 1.868 -4.298 -10.830 11.800 Atomic orbital electron populations 1.22217 0.96855 1.01626 1.02283 1.21018 0.93622 0.82628 1.02464 1.57612 1.78439 1.23045 1.23515 1.19601 0.98063 0.92339 0.81056 1.21421 1.00957 1.29170 1.06323 0.90022 1.24824 0.94951 0.95922 0.96829 1.69876 1.20464 1.43803 1.18802 0.87012 0.81666 0.81750 0.80442 1.20049 1.20939 1.18512 1.01341 0.71727 0.73253 0.72734 1.93544 1.70156 1.76495 1.57452 1.93567 1.85650 1.30794 1.86036 1.59057 1.23885 1.34154 1.68154 1.22020 0.84534 0.92406 1.01133 1.22939 0.98040 0.97108 0.97499 1.21284 0.94350 0.92081 1.00570 0.88836 1.20138 0.94604 0.95123 0.93534 1.22217 1.01437 0.95664 0.98605 1.22785 0.92090 0.93635 0.97085 1.67658 1.14515 1.35800 1.02168 1.22691 0.97445 0.91392 0.94807 1.22035 0.99137 0.97690 1.00267 1.21628 0.92335 0.88942 0.96198 0.92240 0.92579 0.92090 0.91769 0.89905 0.95020 0.93608 0.92500 0.92108 0.88487 0.89154 0.90198 0.83935 0.82676 0.83084 0.84978 0.91754 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 10.24 37.16 0.38 -2.14 16 2 C 0.13 2.12 6.06 -4.04 -0.02 2.10 16 3 N -0.99 -19.16 2.82 -115.66 -0.33 -19.49 16 4 C 0.21 4.76 4.50 -5.20 -0.02 4.73 16 5 C -0.54 -13.41 9.94 -34.44 -0.34 -13.75 16 6 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -24.71 13.96 55.43 0.77 -23.93 16 9 Si 0.86 20.08 27.47 -169.99 -4.67 15.41 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 13 S 2.80 54.13 6.31 -107.50 -0.68 53.45 16 14 O -0.99 -19.66 16.69 -57.17 -0.95 -20.61 16 15 O -0.98 -21.72 16.27 -57.17 -0.93 -22.65 16 16 N -1.01 -16.68 3.75 -111.30 -0.42 -17.10 16 17 C 0.12 1.95 6.99 -2.41 -0.02 1.93 16 18 C -0.12 -1.56 6.49 -24.46 -0.16 -1.72 16 19 C -0.06 -0.73 3.18 -89.94 -0.29 -1.02 16 20 H 0.09 0.90 8.01 -51.93 -0.42 0.49 16 21 C -0.03 -0.30 4.94 -104.32 -0.51 -0.81 16 22 C -0.16 -2.02 8.31 -39.44 -0.33 -2.35 16 23 C 0.10 1.25 11.18 -17.55 -0.20 1.05 16 24 N -0.49 -6.36 10.36 -13.25 -0.14 -6.50 16 25 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 26 C -0.17 -1.75 9.78 -39.44 -0.39 -2.13 16 27 C 0.14 1.84 6.51 -3.06 -0.02 1.82 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.96 7.61 -51.93 -0.40 0.56 16 32 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 33 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 34 H 0.05 1.09 5.96 -51.93 -0.31 0.78 16 35 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.09 1.40 6.84 -51.93 -0.36 1.04 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.14 1.92 7.40 -52.49 -0.39 1.53 16 41 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.13 1.01 8.04 -52.49 -0.42 0.58 16 44 H 0.06 0.87 7.19 -51.93 -0.37 0.50 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -31.15 379.34 -10.70 -41.85 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.87 Total: 3.38 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.21 Total: -9.52 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -0.11 Total: -67.02 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.88 Total: -43.26 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Atomic # 16 Polarization: 54.13 SS G_CDS: -0.68 Total: 53.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.15 -10.70 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601456180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.987 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds