Wall clock time and date at job start Sat Apr 11 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81403 * 109.46721 * 2 1 4 4 C 1.81404 * 103.00098 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47228 * 180.02562 * 4 3 2 6 6 C 1.35311 * 126.66739 * 90.00045 * 5 4 3 7 7 C 1.42280 * 103.92089 * 179.97438 * 6 5 4 8 8 C 1.48330 * 126.93894 * 179.97438 * 7 6 5 9 9 O 1.21497 * 119.99474 * 5.79240 * 8 7 6 10 10 N 1.34772 * 119.99948 * 185.79243 * 8 7 6 11 11 C 1.47085 * 120.87960 * 185.89586 * 10 8 7 12 12 C 1.53245 * 108.51943 * 128.83906 * 11 10 8 13 13 N 1.46893 * 109.33830 * 53.82722 * 12 11 10 14 14 C 1.46899 * 110.99811 * 172.74610 * 13 12 11 15 15 C 1.50698 * 109.47028 * 64.99421 * 14 13 12 16 16 H 1.08001 * 120.00108 * 354.99070 * 15 14 13 17 17 C 1.37881 * 120.00004 * 174.98826 * 15 14 13 18 18 N 1.31513 * 119.99912 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00108 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47174 * 89.99977 * 19 17 15 21 21 H 1.48502 * 109.47286 * 210.00428 * 19 17 15 22 22 H 1.48505 * 109.46983 * 330.00175 * 19 17 15 23 23 C 1.46893 * 111.27500 * 296.90033 * 13 12 11 24 24 C 1.47077 * 120.88337 * 5.92074 * 10 8 7 25 25 N 1.30978 * 106.12133 * 0.26482 * 7 6 5 26 26 O 1.20907 * 111.44360 * 359.53087 * 25 7 6 27 27 H 1.09001 * 109.47482 * 299.99717 * 1 2 3 28 28 H 1.09000 * 109.47672 * 60.00140 * 1 2 3 29 29 H 1.09006 * 109.46558 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47482 * 240.00283 * 2 1 3 31 31 H 1.09002 * 109.47158 * 119.99840 * 2 1 3 32 32 H 1.08997 * 109.46773 * 59.99946 * 4 3 2 33 33 H 1.09000 * 109.47118 * 300.00634 * 4 3 2 34 34 H 1.07997 * 128.04097 * 359.97438 * 6 5 4 35 35 H 1.09000 * 109.62704 * 9.12844 * 11 10 8 36 36 H 1.08994 * 109.62943 * 248.54882 * 11 10 8 37 37 H 1.08992 * 109.48977 * 173.79384 * 12 11 10 38 38 H 1.08998 * 109.48885 * 293.87037 * 12 11 10 39 39 H 1.09002 * 109.47125 * 184.99700 * 14 13 12 40 40 H 1.09004 * 109.47364 * 304.99385 * 14 13 12 41 41 H 0.97003 * 119.99979 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.49900 * 183.06838 * 23 13 12 43 43 H 1.09003 * 109.49099 * 303.14210 * 23 13 12 44 44 H 1.09005 * 109.62613 * 111.44985 * 24 10 8 45 45 H 1.09003 * 109.62745 * 350.87394 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 6 3.9370 1.5060 0.0008 5 6 4.5962 2.8612 0.0015 6 6 4.9491 3.5875 1.0872 7 6 5.5238 4.7673 0.5377 8 6 6.0833 5.9187 1.2870 9 8 6.1758 5.8686 2.4974 10 7 6.4891 7.0204 0.6251 11 6 7.1640 8.1198 1.3317 12 6 8.4589 8.4563 0.5845 13 7 8.1512 8.7214 -0.8271 14 6 9.3367 9.2146 -1.5407 15 6 10.3870 8.1345 -1.5763 16 1 10.2263 7.2073 -1.0464 17 6 11.5532 8.3301 -2.2854 18 7 11.7491 9.4594 -2.9303 19 14 12.8549 6.9911 -2.3302 20 1 12.5983 6.0896 -3.4820 21 1 14.1970 7.6099 -2.4752 22 1 12.8041 6.2091 -1.0687 23 6 7.5986 7.5299 -1.4850 24 6 6.2685 7.1554 -0.8227 25 7 5.4534 4.6343 -0.7634 26 8 4.9472 3.5809 -1.0732 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2405 0.9544 -0.8890 33 1 4.2398 0.9546 0.8909 34 1 4.8237 3.3312 2.1288 35 1 7.3986 7.8110 2.3504 36 1 6.5148 8.9951 1.3519 37 1 8.9163 9.3400 1.0293 38 1 9.1484 7.6151 0.6548 39 1 9.0605 9.4866 -2.5595 40 1 9.7328 10.0898 -1.0257 41 1 12.5697 9.5971 -3.4289 42 1 7.4321 7.7417 -2.5411 43 1 8.3001 6.7015 -1.3860 44 1 5.5332 7.9380 -1.0096 45 1 5.9111 6.2089 -1.2284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:09 Heat of formation + Delta-G solvation = 48.677711 kcal Electronic energy + Delta-G solvation = -26911.043838 eV Core-core repulsion = 23058.997748 eV Total energy + Delta-G solvation = -3852.046091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.32306 -39.90572 -37.56504 -34.67188 -34.44742 -33.64005 -33.30552 -32.29614 -30.68033 -28.51386 -28.31348 -25.79513 -24.56627 -24.08046 -23.05573 -22.93692 -21.96058 -20.37629 -18.89323 -18.13387 -17.67198 -17.10226 -16.51500 -16.31440 -15.85690 -15.48359 -15.13388 -15.00005 -14.84461 -14.56274 -14.44389 -14.37604 -13.88682 -13.64591 -13.48426 -13.36890 -12.84897 -12.78230 -12.42299 -12.26081 -11.94085 -11.85827 -11.60468 -11.17121 -11.04781 -10.86071 -10.65039 -10.62507 -10.61635 -10.56635 -10.29524 -10.05250 -9.86393 -9.70439 -9.62289 -8.52118 -8.47273 -8.20219 -7.27417 -6.07272 -4.16534 0.49153 1.13180 1.68140 2.03440 2.52770 2.89763 3.13814 3.24335 3.31368 3.34658 3.76756 3.99166 4.37094 4.37491 4.40323 4.43302 4.64211 4.72600 4.84297 4.85973 5.01954 5.10550 5.18372 5.23135 5.26443 5.43717 5.50969 5.57109 5.57817 5.65568 5.80972 5.88538 6.00512 6.20773 6.44289 6.60680 6.66981 6.71496 7.19106 7.40445 7.46819 7.78968 7.84482 7.95332 8.10482 8.17841 8.23055 8.92968 9.50613 10.97814 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.002360 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.501889 B =11863.386588 C =12657.172601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 S -0.235 6.235 4 C -0.009 4.009 5 C -0.027 4.027 6 C -0.154 4.154 7 C -0.014 4.014 8 C 0.593 3.407 9 O -0.533 6.533 10 N -0.587 5.587 11 C 0.116 3.884 12 C 0.049 3.951 13 N -0.541 5.541 14 C 0.187 3.813 15 C -0.551 4.551 16 H 0.055 0.945 17 C 0.066 3.934 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.055 3.945 24 C 0.080 3.920 25 N -0.313 5.313 26 O 0.124 5.876 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.184 0.816 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.555 -18.351 5.954 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.242 4.242 3 S -0.008 6.008 4 C -0.157 4.157 5 C -0.091 4.091 6 C -0.179 4.179 7 C -0.173 4.173 8 C 0.379 3.621 9 O -0.410 6.410 10 N -0.319 5.319 11 C -0.006 4.006 12 C -0.080 4.080 13 N -0.266 5.266 14 C 0.062 3.938 15 C -0.590 4.590 16 H 0.073 0.927 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.074 4.074 24 C -0.042 4.042 25 N -0.015 5.015 26 O 0.051 5.949 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.201 0.799 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.936 -16.160 5.464 27.006 hybrid contribution 2.193 -2.697 0.491 3.511 sum -18.743 -18.857 5.955 27.246 Atomic orbital electron populations 1.21515 0.91902 1.02775 1.03468 1.23390 1.00534 0.94983 1.05276 1.87471 1.02369 1.12866 1.98131 1.21638 0.94309 0.91875 1.07905 1.23258 1.03030 0.96564 0.86240 1.22398 1.01625 0.92485 1.01369 1.23560 1.05012 0.98808 0.89892 1.16939 0.78272 0.80818 0.86110 1.90764 1.56382 1.81205 1.12603 1.48071 1.56386 1.17193 1.10269 1.21959 0.94268 0.88073 0.96277 1.22265 0.94117 1.01047 0.90616 1.62504 1.33323 1.29344 1.01384 1.19776 0.84789 0.95036 0.94211 1.21718 1.03013 1.02436 1.31816 0.92704 1.24953 0.98180 0.95460 0.95117 1.69937 1.26446 1.24076 1.32277 0.86651 0.81218 0.82089 0.78418 1.20586 1.21040 1.20046 1.22165 0.93451 0.93538 0.98247 1.22818 0.99142 1.03981 0.78299 1.74015 1.12418 0.99652 1.15457 1.84853 1.55335 1.21529 1.33221 0.91528 0.91485 0.90831 0.89694 0.89743 0.87154 0.86488 0.79913 0.89299 0.90774 0.90047 0.94003 0.94497 0.95217 0.92753 0.90160 0.93893 0.91065 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 9.92 37.16 0.37 -0.19 16 2 C -0.09 -0.41 6.66 37.16 0.25 -0.16 16 3 S -0.23 -1.75 21.72 -107.50 -2.33 -4.08 16 4 C -0.01 -0.06 6.50 36.00 0.23 0.18 16 5 C -0.03 -0.26 6.73 -35.35 -0.24 -0.50 16 6 C -0.15 -1.76 10.93 -39.07 -0.43 -2.19 16 7 C -0.01 -0.21 6.94 -82.53 -0.57 -0.78 16 8 C 0.59 10.18 7.72 -12.11 -0.09 10.08 16 9 O -0.53 -10.06 16.44 5.37 0.09 -9.97 16 10 N -0.59 -10.09 3.01 -173.39 -0.52 -10.61 16 11 C 0.12 1.95 6.58 -3.60 -0.02 1.93 16 12 C 0.05 0.95 5.24 -3.70 -0.02 0.93 16 13 N -0.54 -11.50 4.83 -235.78 -1.14 -12.64 16 14 C 0.19 4.76 5.11 -4.98 -0.03 4.74 16 15 C -0.55 -15.09 7.75 -34.44 -0.27 -15.36 16 16 H 0.05 1.52 5.88 -52.49 -0.31 1.21 16 17 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 C 0.06 1.09 5.15 -3.71 -0.02 1.07 16 24 C 0.08 1.34 6.51 -3.61 -0.02 1.31 16 25 N -0.31 -4.48 8.57 33.29 0.29 -4.20 16 26 O 0.12 1.50 11.18 17.23 0.19 1.69 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.12 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.46 7.11 -51.93 -0.37 1.09 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.53 8.05 -51.93 -0.42 1.12 16 38 H 0.04 0.91 6.92 -51.93 -0.36 0.55 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 43 H 0.04 0.95 6.79 -51.93 -0.35 0.59 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.12 1.86 3.84 -69.36 -0.27 1.60 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -31.99 379.65 -9.65 -41.64 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.70 Total: -1.69 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.96 Total: 2.82 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.64 Total: -52.69 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.28 Total: -8.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.33 Total: -4.08 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.99 -9.65 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.320 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds