Wall clock time and date at job start Sat Apr 11 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65605 * 119.99939 * 2 1 4 4 O 1.42095 * 106.40180 * 310.10850 * 3 2 1 5 5 O 1.42105 * 106.39998 * 177.19019 * 3 2 1 6 6 C 1.76196 * 107.21568 * 63.65162 * 3 2 1 7 7 C 1.38130 * 120.03603 * 244.93522 * 6 3 2 8 8 C 1.38262 * 120.07141 * 179.74961 * 7 6 3 9 9 C 1.38310 * 120.15420 * 0.25462 * 8 7 6 10 10 C 1.38081 * 120.07290 * 359.97438 * 9 8 7 11 11 C 1.38898 * 120.03985 * 65.19244 * 6 3 2 12 12 N 1.39675 * 120.07390 * 0.02562 * 11 6 3 13 13 C 1.46496 * 119.99892 * 174.39906 * 12 11 6 14 14 C 1.53036 * 109.46020 * 275.06925 * 13 12 11 15 15 C 1.53192 * 109.31430 * 178.61397 * 14 13 12 16 16 N 1.46933 * 108.77311 * 54.63504 * 15 14 13 17 17 C 1.36937 * 120.63234 * 126.37218 * 16 15 14 18 18 H 1.08003 * 119.99615 * 327.18025 * 17 16 15 19 19 C 1.38811 * 119.99956 * 147.17973 * 17 16 15 20 20 N 1.31611 * 120.00151 * 342.04335 * 19 17 16 21 21 Si 1.86802 * 119.99729 * 162.03878 * 19 17 16 22 22 H 1.48505 * 109.47117 * 60.00228 * 21 19 17 23 23 H 1.48500 * 109.47116 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47207 * 300.00199 * 21 19 17 25 25 C 1.46927 * 118.73700 * 306.38977 * 16 15 14 26 26 C 1.53036 * 109.46155 * 155.00123 * 13 12 11 27 27 H 1.09004 * 109.46717 * 59.99661 * 1 2 3 28 28 H 1.08999 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46915 * 299.99912 * 1 2 3 30 30 H 0.97002 * 119.99843 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.96018 * 0.02825 * 7 6 3 32 32 H 1.08001 * 119.92162 * 180.23812 * 8 7 6 33 33 H 1.07992 * 119.96406 * 179.97438 * 9 8 7 34 34 H 1.07994 * 120.03644 * 180.02562 * 10 9 8 35 35 H 0.97004 * 120.00021 * 354.40125 * 12 11 6 36 36 H 1.09006 * 109.45918 * 35.02786 * 13 12 11 37 37 H 1.09004 * 109.50002 * 298.56319 * 14 13 12 38 38 H 1.09000 * 109.50163 * 58.66063 * 14 13 12 39 39 H 1.08999 * 109.58761 * 294.85070 * 15 14 13 40 40 H 1.09003 * 109.70805 * 174.48819 * 15 14 13 41 41 H 0.97008 * 120.00161 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.58637 * 293.82646 * 25 16 15 43 43 H 1.09001 * 109.70041 * 173.46759 * 25 16 15 44 44 H 1.09005 * 109.49686 * 301.33707 * 26 13 12 45 45 H 1.08994 * 109.50022 * 61.42988 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7331 2.2208 -1.0426 5 8 3.6728 1.1009 0.0668 6 6 1.9069 2.2593 1.5082 7 6 1.2143 3.4542 1.4849 8 6 0.9064 4.0997 2.6682 9 6 1.2949 3.5545 3.8785 10 6 1.9916 2.3627 3.9087 11 6 2.3032 1.7117 2.7216 12 7 3.0088 0.5066 2.7485 13 6 3.5325 -0.0074 4.0164 14 6 4.8948 0.6291 4.3008 15 6 5.4235 0.1158 5.6438 16 7 5.4378 -1.3532 5.6160 17 6 6.5816 -2.0456 5.9119 18 1 7.5454 -1.6301 5.6573 19 6 6.5022 -3.2814 6.5391 20 7 5.3977 -3.6335 7.1621 21 14 7.9632 -4.4448 6.4985 22 1 9.1336 -3.7922 7.1385 23 1 7.6255 -5.6893 7.2351 24 1 8.2916 -4.7781 5.0891 25 6 4.2016 -2.0652 5.2644 26 6 3.6867 -1.5273 3.9257 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 0.9091 3.8824 0.5415 32 1 0.3614 5.0319 2.6473 33 1 1.0531 4.0615 4.8008 34 1 2.2943 1.9374 4.8541 35 1 3.1521 0.0100 1.9276 36 1 2.8410 0.2400 4.8219 37 1 5.5940 0.3616 3.5084 38 1 4.7885 1.7131 4.3421 39 1 4.7732 0.4597 6.4481 40 1 6.4349 0.4879 5.8072 41 1 5.3421 -4.4973 7.6001 42 1 3.4516 -1.8990 6.0377 43 1 4.4047 -3.1324 5.1757 44 1 2.7203 -1.9782 3.6999 45 1 4.3971 -1.7745 3.1368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603292027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:12 Heat of formation + Delta-G solvation = -23.100989 kcal Electronic energy + Delta-G solvation = -28337.318295 eV Core-core repulsion = 24482.159647 eV Total energy + Delta-G solvation = -3855.158649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.80718 -37.85712 -37.31668 -35.94650 -35.37971 -34.96200 -32.55061 -31.31532 -30.59655 -29.79486 -28.27013 -26.25068 -24.99531 -23.55941 -22.67016 -22.19428 -21.13055 -19.88742 -19.29398 -18.23175 -17.67086 -17.15814 -16.70201 -16.53986 -15.64146 -15.03561 -14.91973 -14.64046 -14.32930 -14.21993 -14.10503 -13.86906 -13.66820 -13.55104 -13.06601 -13.03915 -12.72703 -12.51495 -12.37381 -12.16743 -12.08338 -11.81123 -11.69749 -11.49514 -11.19710 -10.98484 -10.86652 -10.76279 -10.66026 -10.41294 -10.22197 -9.98962 -9.85963 -9.67281 -9.63123 -9.40270 -8.53318 -7.62933 -6.70336 -5.87238 -3.32876 0.30816 0.89007 1.48733 2.84624 3.27716 3.35430 3.40653 3.42810 3.49340 3.72025 4.27690 4.44604 4.74205 4.79625 4.86568 5.10868 5.18232 5.20867 5.25741 5.28243 5.39669 5.45470 5.46832 5.52467 5.55146 5.65950 5.74791 5.95402 5.97460 6.14089 6.17773 6.28341 6.39407 6.40290 6.41684 6.50106 6.64445 6.71659 6.74046 6.90484 7.13679 7.20036 7.42478 7.56060 7.76346 8.40361 9.13774 9.75844 10.35341 11.21592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.003176 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.123890 B = 8815.001763 C = 9561.301297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.126 6.126 3 S 2.696 3.304 4 O -0.964 6.964 5 O -0.958 6.958 6 C -0.760 4.760 7 C 0.019 3.981 8 C -0.206 4.206 9 C -0.019 4.019 10 C -0.213 4.213 11 C 0.321 3.679 12 N -0.728 5.728 13 C 0.152 3.848 14 C -0.147 4.147 15 C 0.148 3.852 16 N -0.589 5.589 17 C -0.261 4.261 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.899 5.899 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.179 3.821 26 C -0.150 4.150 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.418 0.582 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.394 0.606 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.023 0.977 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.479 10.527 -10.994 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.886 5.886 3 S 2.786 3.214 4 O -0.954 6.954 5 O -0.948 6.948 6 C -0.855 4.855 7 C -0.001 4.001 8 C -0.227 4.227 9 C -0.039 4.039 10 C -0.235 4.235 11 C 0.209 3.791 12 N -0.353 5.353 13 C 0.048 3.952 14 C -0.187 4.187 15 C 0.021 3.979 16 N -0.312 5.312 17 C -0.390 4.390 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.542 5.542 21 Si 0.730 3.270 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.053 3.947 26 C -0.189 4.189 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.252 0.748 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.231 0.769 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.983 10.695 -11.356 20.295 hybrid contribution 0.603 -1.097 0.470 1.337 sum -12.380 9.598 -10.886 19.076 Atomic orbital electron populations 1.21449 0.78301 1.04151 1.01988 1.55404 1.16464 1.24380 1.92314 1.01701 0.72974 0.72631 0.74045 1.93540 1.79460 1.69143 1.53295 1.93629 1.30612 1.83227 1.87338 1.29949 1.25475 1.13137 1.16920 1.20622 0.89721 0.90545 0.99192 1.20945 1.07108 1.02329 0.92339 1.21202 0.91454 0.93125 0.98072 1.20895 1.06999 0.98567 0.97074 1.17295 0.84857 0.84421 0.92528 1.45733 1.56842 1.21032 1.11667 1.21180 0.95068 0.94967 0.83942 1.22519 0.96338 0.98797 1.01084 1.20896 0.98732 0.85996 0.92290 1.43999 1.08848 0.99223 1.79146 1.19085 0.85903 1.01236 1.32824 0.91896 1.25137 0.97092 1.00249 0.96485 1.70031 1.27415 1.21567 1.35167 0.86404 0.82387 0.80403 0.77761 1.20737 1.21610 1.20896 1.20633 0.87457 0.97596 0.89061 1.22560 1.00496 0.92703 1.03185 0.91481 0.89937 0.92049 0.74837 0.84544 0.85772 0.85551 0.84806 0.76913 0.90226 0.91557 0.92711 0.96366 0.92342 0.93510 0.95897 0.90010 0.92602 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.13 59.85 0.67 1.29 16 2 N -1.13 -10.22 5.72 -16.63 -0.10 -10.32 16 3 S 2.70 33.67 4.99 -107.50 -0.54 33.13 16 4 O -0.96 -13.73 16.74 -57.17 -0.96 -14.68 16 5 O -0.96 -14.96 16.39 -57.17 -0.94 -15.90 16 6 C -0.76 -9.60 5.87 -39.38 -0.23 -9.83 16 7 C 0.02 0.22 9.54 -39.61 -0.38 -0.16 16 8 C -0.21 -2.10 10.04 -39.55 -0.40 -2.50 16 9 C -0.02 -0.20 10.04 -39.61 -0.40 -0.60 16 10 C -0.21 -2.66 9.25 -39.38 -0.36 -3.03 16 11 C 0.32 4.34 6.59 -83.78 -0.55 3.79 16 12 N -0.73 -10.35 4.99 -52.13 -0.26 -10.61 16 13 C 0.15 2.41 2.23 -67.90 -0.15 2.26 16 14 C -0.15 -2.56 5.67 -26.61 -0.15 -2.71 16 15 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 16 N -0.59 -14.19 2.96 -172.31 -0.51 -14.70 16 17 C -0.26 -7.00 9.52 -15.06 -0.14 -7.14 16 18 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 19 C 0.01 0.27 4.85 -17.43 -0.08 0.19 16 20 N -0.90 -25.30 11.63 55.49 0.65 -24.66 16 21 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.18 3.98 5.28 -3.71 -0.02 3.96 16 26 C -0.15 -2.61 5.55 -26.62 -0.15 -2.76 16 27 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.42 3.16 8.96 -34.48 -0.31 2.85 16 31 H 0.14 1.35 7.33 -52.49 -0.38 0.97 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.65 6.14 -52.49 -0.32 1.33 16 35 H 0.39 5.40 5.75 -40.82 -0.23 5.17 16 36 H 0.08 1.23 6.25 -51.93 -0.32 0.90 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 2.04 6.47 -51.93 -0.34 1.70 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -32.88 370.81 -10.99 -43.87 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.52 Total: 6.34 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.38 Total: -14.26 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.22 Total: -60.29 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.89 Total: -30.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 33.67 SS G_CDS: -0.54 Total: 33.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.88 -10.99 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603292027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.766 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds