Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46813 * 2 1 4 4 C 1.46498 * 120.00293 * 269.99894 * 3 2 1 5 5 C 1.50700 * 109.47105 * 270.00407 * 4 3 2 6 6 H 1.07998 * 120.00298 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00116 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99742 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47101 * 60.00539 * 9 7 5 11 11 H 1.48503 * 109.47200 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47719 * 300.00312 * 9 7 5 13 13 C 1.34779 * 119.99929 * 89.99802 * 3 2 1 14 14 O 1.21279 * 119.99995 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00043 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.47108 * 179.97438 * 15 13 3 17 17 C 1.35691 * 118.73644 * 89.99695 * 16 15 13 18 18 C 1.36204 * 122.17358 * 180.02562 * 17 16 15 19 19 C 1.43205 * 120.44718 * 180.02562 * 18 17 16 20 20 N 8.25043 * 76.76718 * 48.35031 * 2 1 3 21 21 C 1.47334 * 119.10906 * 0.27327 * 18 17 16 22 22 C 1.39220 * 121.95566 * 179.70007 * 21 18 17 23 23 C 1.37821 * 119.55401 * 180.02562 * 22 21 18 24 24 C 1.38863 * 120.68212 * 0.02562 * 23 22 21 25 25 C 1.37752 * 120.70130 * 359.42915 * 24 23 22 26 26 C 1.39461 * 119.53158 * 0.83605 * 25 24 23 27 27 C 1.34674 * 118.73128 * 270.01534 * 16 15 13 28 28 O 1.21730 * 120.20947 * 359.95832 * 27 16 15 29 29 H 1.09005 * 109.46565 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47192 * 300.00105 * 1 2 3 31 31 H 1.09004 * 109.46927 * 60.00378 * 1 2 3 32 32 H 1.08999 * 109.47276 * 240.00423 * 2 1 3 33 33 H 1.08996 * 109.47210 * 119.99459 * 2 1 3 34 34 H 1.09000 * 109.47048 * 30.00067 * 4 3 2 35 35 H 1.08997 * 109.47400 * 149.99965 * 4 3 2 36 36 H 0.97000 * 119.99558 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47331 * 59.99090 * 15 13 3 38 38 H 1.09004 * 109.46678 * 299.99350 * 15 13 3 39 39 H 1.08003 * 118.91133 * 0.04338 * 17 16 15 40 40 H 1.07998 * 120.22384 * 0.02562 * 22 21 18 41 41 H 1.07992 * 119.66083 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.64934 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.23278 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3429 1.2310 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9135 2.0969 -3.4168 10 1 6.1416 0.6402 -3.5937 11 1 6.1610 2.7969 -4.7029 12 1 6.8407 2.6211 -2.3820 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3099 2.2034 3.5859 17 6 1.3297 2.9996 4.0822 18 6 1.5477 3.8601 5.1153 19 6 0.4857 4.6833 5.6104 20 7 -0.3586 5.3374 6.0012 21 6 2.8922 3.9365 5.7129 22 6 3.1823 4.7991 6.7664 23 6 4.4578 4.8305 7.2877 24 6 5.4542 4.0119 6.7726 25 6 5.1857 3.1432 5.7379 26 6 3.9030 3.0997 5.1921 27 6 3.5638 2.2066 4.0772 28 8 4.4107 1.4740 3.5997 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.5817 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1384 36 1 3.6752 3.5164 -4.4438 37 1 2.6227 0.4188 2.5299 38 1 0.9443 1.0115 2.5302 39 1 0.3439 2.9492 3.6437 40 1 2.4132 5.4393 7.1725 41 1 4.6848 5.4993 8.1047 42 1 6.4480 4.0505 7.1935 43 1 5.9662 2.5097 5.3433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603359166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = 11.111260 kcal Electronic energy + Delta-G solvation = -28709.340272 eV Core-core repulsion = 24720.221226 eV Total energy + Delta-G solvation = -3989.119046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65110 -39.39111 -38.38906 -37.47306 -36.35953 -35.45384 -33.35252 -32.78611 -31.54429 -30.26113 -29.93238 -28.90045 -26.70502 -24.75489 -23.99468 -23.15330 -22.69502 -22.44425 -19.62600 -18.60523 -18.58859 -18.00878 -17.12200 -16.62409 -16.44879 -15.78019 -15.42283 -15.17915 -14.89785 -14.65921 -14.54114 -14.18314 -14.05503 -13.85091 -13.77222 -13.59331 -13.30968 -13.06410 -12.80149 -12.73119 -12.62497 -12.15781 -12.00763 -11.90817 -11.86228 -11.60775 -11.41225 -11.26979 -10.99316 -10.83357 -10.59686 -10.27912 -10.18323 -9.89629 -9.71095 -9.28910 -9.11300 -8.46723 -7.98606 -7.83656 -6.08467 -4.13215 0.44614 0.57847 1.45086 2.10571 2.56217 2.66632 3.09679 3.14171 3.31187 3.35494 3.40081 3.67638 3.69198 3.86348 4.12073 4.26845 4.42336 4.51927 4.65324 4.74001 4.79732 4.83352 5.04154 5.07505 5.11543 5.25404 5.26736 5.34950 5.45951 5.48102 5.60265 5.71090 5.85074 5.92418 6.05850 6.10979 6.13286 6.19217 6.34066 6.58326 6.76746 6.91295 7.32451 7.38436 7.40645 7.65506 7.87358 8.16807 8.20950 8.74636 8.93267 9.52168 10.99690 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.003360 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.646953 B = 8331.101823 C = 9411.671771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.491 3.509 14 O -0.527 6.527 15 C 0.067 3.933 16 N -0.494 5.494 17 C 0.218 3.782 18 C -0.134 4.134 19 C 0.279 3.721 20 N -0.427 5.427 21 C 0.033 3.967 22 C -0.129 4.129 23 C -0.077 4.077 24 C -0.139 4.139 25 C -0.040 4.040 26 C -0.142 4.142 27 C 0.555 3.445 28 O -0.498 6.498 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.170 0.830 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.996 -4.763 19.812 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.275 3.725 14 O -0.403 6.403 15 C -0.058 4.058 16 N -0.204 5.204 17 C 0.088 3.912 18 C -0.144 4.144 19 C -0.036 4.036 20 N -0.104 5.104 21 C 0.031 3.969 22 C -0.148 4.148 23 C -0.095 4.095 24 C -0.157 4.157 25 C -0.059 4.059 26 C -0.146 4.146 27 C 0.349 3.651 28 O -0.373 6.373 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.187 0.813 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.498 -3.560 19.851 20.663 hybrid contribution 1.213 -0.334 -0.739 1.459 sum -3.285 -3.894 19.112 19.779 Atomic orbital electron populations 1.22238 0.96482 1.01733 1.02366 1.21519 0.93629 0.83976 1.03208 1.48253 1.63164 1.13284 1.07448 1.19314 0.96498 0.93575 0.77667 1.21387 0.96837 1.32238 1.06336 0.92398 1.24917 0.97899 0.94806 0.96334 1.69917 1.35779 1.33286 1.14381 0.86558 0.84755 0.78325 0.77825 1.20164 1.21151 1.20117 1.20278 0.79738 0.87377 0.85105 1.90742 1.45115 1.17768 1.86701 1.22137 1.04506 0.94112 0.85054 1.44554 1.10026 1.35745 1.30106 1.21493 0.93512 0.86396 0.89790 1.15563 0.90237 1.04533 1.04078 1.24865 0.92410 0.92888 0.93398 1.81332 1.09682 1.10076 1.09273 1.18526 0.90180 0.94227 0.94014 1.20979 0.97540 0.99499 0.96734 1.21303 0.92519 0.97245 0.98458 1.21163 0.99868 0.97017 0.97659 1.21093 0.94640 0.96436 0.93746 1.19569 0.95471 1.00716 0.98835 1.18186 0.80780 0.83116 0.83003 1.90903 1.45861 1.40713 1.59811 0.91832 0.93218 0.91773 0.89396 0.91640 0.94729 0.93852 0.92620 0.85340 0.86286 0.81325 0.85384 0.85258 0.85044 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 37.16 0.38 -1.47 16 2 C 0.10 1.40 5.93 -4.04 -0.02 1.38 16 3 N -0.59 -11.39 2.46 -175.06 -0.43 -11.82 16 4 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.49 9.29 7.73 -10.98 -0.08 9.21 16 14 O -0.53 -12.56 16.01 5.56 0.09 -12.47 16 15 C 0.07 0.85 4.29 -5.19 -0.02 0.83 16 16 N -0.49 -6.49 2.07 -118.73 -0.25 -6.74 16 17 C 0.22 2.32 9.86 -16.58 -0.16 2.16 16 18 C -0.13 -1.49 5.87 -105.00 -0.62 -2.10 16 19 C 0.28 3.23 14.26 -22.43 -0.32 2.91 16 20 N -0.43 -5.68 18.55 41.89 0.78 -4.90 16 21 C 0.03 0.39 5.90 -104.72 -0.62 -0.23 16 22 C -0.13 -1.29 9.50 -39.37 -0.37 -1.66 16 23 C -0.08 -0.65 10.02 -39.50 -0.40 -1.05 16 24 C -0.14 -1.24 10.01 -39.53 -0.40 -1.64 16 25 C -0.04 -0.46 9.65 -39.30 -0.38 -0.84 16 26 C -0.14 -1.87 5.89 -104.86 -0.62 -2.49 16 27 C 0.55 8.46 7.60 -12.84 -0.10 8.36 16 28 O -0.50 -9.04 15.99 5.16 0.08 -8.96 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.46 7.22 -51.93 -0.38 0.09 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.07 0.72 6.44 -51.93 -0.33 0.38 16 34 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.13 1.57 6.59 -51.93 -0.34 1.23 16 38 H 0.12 0.95 7.00 -51.93 -0.36 0.58 16 39 H 0.17 1.23 7.96 -52.48 -0.42 0.81 16 40 H 0.13 1.15 7.35 -52.49 -0.39 0.76 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 1.57 7.78 -52.49 -0.41 1.16 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -36.46 378.39 -7.57 -44.03 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.09 Total: -2.32 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -4.18 Total: 6.12 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.84 Total: -48.99 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.17 Total: -21.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.46 -7.57 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603359166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.145 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds