Wall clock time and date at job start Sat Apr 11 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46813 * 2 1 4 4 C 1.46498 * 120.00293 * 269.99894 * 3 2 1 5 5 C 1.50700 * 109.47105 * 270.00407 * 4 3 2 6 6 H 1.07998 * 120.00298 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00116 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99742 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47101 * 60.00539 * 9 7 5 11 11 H 1.48503 * 109.47200 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47719 * 300.00312 * 9 7 5 13 13 C 1.34779 * 119.99929 * 89.99802 * 3 2 1 14 14 O 1.21279 * 119.99995 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00043 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.47108 * 179.97438 * 15 13 3 17 17 C 1.35691 * 118.73644 * 89.99695 * 16 15 13 18 18 C 1.36204 * 122.17358 * 180.02562 * 17 16 15 19 19 C 1.43205 * 120.44718 * 180.02562 * 18 17 16 20 20 N 8.25043 * 76.76718 * 48.35031 * 2 1 3 21 21 C 1.47334 * 119.10906 * 0.27327 * 18 17 16 22 22 C 1.39220 * 121.95566 * 179.70007 * 21 18 17 23 23 C 1.37821 * 119.55401 * 180.02562 * 22 21 18 24 24 C 1.38863 * 120.68212 * 0.02562 * 23 22 21 25 25 C 1.37752 * 120.70130 * 359.42915 * 24 23 22 26 26 C 1.39461 * 119.53158 * 0.83605 * 25 24 23 27 27 C 1.34674 * 118.73128 * 270.01534 * 16 15 13 28 28 O 1.21730 * 120.20947 * 359.95832 * 27 16 15 29 29 H 1.09005 * 109.46565 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47192 * 300.00105 * 1 2 3 31 31 H 1.09004 * 109.46927 * 60.00378 * 1 2 3 32 32 H 1.08999 * 109.47276 * 240.00423 * 2 1 3 33 33 H 1.08996 * 109.47210 * 119.99459 * 2 1 3 34 34 H 1.09000 * 109.47048 * 30.00067 * 4 3 2 35 35 H 1.08997 * 109.47400 * 149.99965 * 4 3 2 36 36 H 0.97000 * 119.99558 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47331 * 59.99090 * 15 13 3 38 38 H 1.09004 * 109.46678 * 299.99350 * 15 13 3 39 39 H 1.08003 * 118.91133 * 0.04338 * 17 16 15 40 40 H 1.07998 * 120.22384 * 0.02562 * 22 21 18 41 41 H 1.07992 * 119.66083 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.64934 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.23278 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3429 1.2310 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9135 2.0969 -3.4168 10 1 6.1416 0.6402 -3.5937 11 1 6.1610 2.7969 -4.7029 12 1 6.8407 2.6211 -2.3820 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3099 2.2034 3.5859 17 6 1.3297 2.9996 4.0822 18 6 1.5477 3.8601 5.1153 19 6 0.4857 4.6833 5.6104 20 7 -0.3586 5.3374 6.0012 21 6 2.8922 3.9365 5.7129 22 6 3.1823 4.7991 6.7664 23 6 4.4578 4.8305 7.2877 24 6 5.4542 4.0119 6.7726 25 6 5.1857 3.1432 5.7379 26 6 3.9030 3.0997 5.1921 27 6 3.5638 2.2066 4.0772 28 8 4.4107 1.4740 3.5997 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.5817 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1384 36 1 3.6752 3.5164 -4.4438 37 1 2.6227 0.4188 2.5299 38 1 0.9443 1.0115 2.5302 39 1 0.3439 2.9492 3.6437 40 1 2.4132 5.4393 7.1725 41 1 4.6848 5.4993 8.1047 42 1 6.4480 4.0505 7.1935 43 1 5.9662 2.5097 5.3433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603359166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:14 Heat of formation + Delta-G solvation = -11.339974 kcal Electronic energy + Delta-G solvation = -28710.313830 eV Core-core repulsion = 24720.221226 eV Total energy + Delta-G solvation = -3990.092604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.66957 -40.69522 -39.44501 -38.47744 -37.41146 -36.96386 -34.98168 -34.16547 -32.40817 -31.64127 -30.81722 -30.16565 -28.37457 -25.71034 -25.27952 -24.50515 -23.89493 -23.42546 -20.77172 -19.83330 -19.52288 -18.87522 -18.69623 -18.29866 -17.78510 -17.04403 -16.55052 -16.51868 -16.19523 -15.91418 -15.52319 -15.43972 -15.02547 -14.86541 -14.77929 -14.64620 -14.54435 -14.44176 -13.98875 -13.66371 -13.61491 -13.52941 -13.32651 -13.20053 -13.03878 -12.91997 -12.70804 -12.63930 -12.50915 -12.19434 -12.15578 -11.85902 -11.75481 -11.36342 -10.97345 -10.66282 -10.46689 -10.09228 -9.49870 -8.90717 -8.25251 -6.39108 -0.39529 -0.31181 0.60366 1.11849 1.33556 1.37735 1.44689 1.59171 1.66680 1.72488 2.24305 2.29473 2.41672 2.74531 2.94678 3.04794 3.31846 3.40162 3.50946 3.68533 3.86381 3.93384 4.04505 4.08131 4.26357 4.29058 4.35444 4.44855 4.55791 4.65288 4.67137 4.90104 4.95868 5.02439 5.07739 5.09470 5.20877 5.21468 5.36983 5.43166 5.45285 5.54901 5.77307 5.80965 5.84909 6.04280 6.45228 6.56774 6.66338 6.73539 7.23377 7.38052 8.81351 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.003360 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.646953 B = 8331.101823 C = 9411.671771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.595 5.595 4 C 0.265 3.735 5 C -0.545 4.545 6 H 0.048 0.952 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.960 3.040 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.283 1.283 13 C 0.482 3.518 14 O -0.588 6.588 15 C 0.080 3.920 16 N -0.496 5.496 17 C 0.215 3.785 18 C -0.132 4.132 19 C 0.301 3.699 20 N -0.454 5.454 21 C 0.021 3.979 22 C -0.135 4.135 23 C -0.066 4.066 24 C -0.130 4.130 25 C -0.058 4.058 26 C -0.168 4.168 27 C 0.544 3.456 28 O -0.543 6.543 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.027 0.973 35 H -0.002 1.002 36 H 0.267 0.733 37 H 0.138 0.862 38 H 0.179 0.821 39 H 0.206 0.794 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 -5.700 22.024 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.326 5.326 4 C 0.144 3.856 5 C -0.584 4.584 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.785 3.215 10 H -0.184 1.184 11 H -0.201 1.201 12 H -0.209 1.209 13 C 0.269 3.731 14 O -0.469 6.469 15 C -0.044 4.044 16 N -0.206 5.206 17 C 0.087 3.913 18 C -0.142 4.142 19 C -0.013 4.013 20 N -0.131 5.131 21 C 0.018 3.982 22 C -0.153 4.153 23 C -0.084 4.084 24 C -0.148 4.148 25 C -0.077 4.077 26 C -0.171 4.171 27 C 0.341 3.659 28 O -0.422 6.422 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.196 0.804 39 H 0.223 0.777 40 H 0.157 0.843 41 H 0.183 0.817 42 H 0.179 0.821 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.894 -4.535 22.091 23.076 hybrid contribution 1.341 0.015 -1.350 1.902 sum -3.553 -4.519 20.741 21.523 Atomic orbital electron populations 1.22182 0.93650 1.03855 1.02294 1.21887 0.95926 0.80852 1.04292 1.48245 1.63295 1.15212 1.05894 1.18687 0.94996 0.91592 0.80333 1.21687 0.98163 1.32097 1.06451 0.93359 1.25771 1.02039 0.94508 0.96473 1.70024 1.37623 1.34054 1.14797 0.85579 0.79439 0.79148 0.77345 1.18359 1.20064 1.20880 1.21357 0.78072 0.86890 0.86797 1.90705 1.47673 1.20682 1.87820 1.22213 1.08109 0.92932 0.81118 1.44564 1.09940 1.36230 1.29891 1.22000 0.94298 0.85557 0.89479 1.15590 0.89936 1.04427 1.04228 1.24730 0.91814 0.92201 0.92553 1.81362 1.10551 1.10961 1.10274 1.18679 0.90110 0.94614 0.94761 1.21220 0.98684 0.99159 0.96258 1.21736 0.91496 0.96675 0.98464 1.21525 1.01436 0.95572 0.96270 1.21244 0.94091 0.97477 0.94892 1.19643 0.96704 1.01580 0.99207 1.18653 0.81070 0.82875 0.83318 1.90858 1.47189 1.42688 1.61461 0.88517 0.90879 0.94310 0.91080 0.87858 0.95471 0.98394 0.92378 0.84447 0.80427 0.77690 0.84343 0.81688 0.82052 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 71.98 0.74 -2.34 16 2 C 0.09 2.43 5.93 86.38 0.51 2.94 16 3 N -0.60 -23.31 2.46 -826.15 -2.03 -25.34 16 4 C 0.27 13.91 5.16 85.63 0.44 14.35 16 5 C -0.55 -31.60 9.39 25.60 0.24 -31.35 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.66 5.46 84.65 0.46 1.13 16 8 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 9 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 13 C 0.48 18.34 7.73 87.66 0.68 19.02 16 14 O -0.59 -29.24 16.01 -3.03 -0.05 -29.29 16 15 C 0.08 1.88 4.29 85.63 0.37 2.25 16 16 N -0.50 -12.58 2.07 -647.81 -1.34 -13.93 16 17 C 0.22 4.21 9.86 83.62 0.82 5.04 16 18 C -0.13 -2.76 5.87 -20.11 -0.12 -2.88 16 19 C 0.30 6.51 14.26 88.32 1.26 7.77 16 20 N -0.45 -11.46 18.55 19.02 0.35 -11.10 16 21 C 0.02 0.47 5.90 -19.93 -0.12 0.36 16 22 C -0.13 -2.42 9.50 22.41 0.21 -2.21 16 23 C -0.07 -0.92 10.02 22.32 0.22 -0.70 16 24 C -0.13 -2.05 10.01 22.30 0.22 -1.82 16 25 C -0.06 -1.33 9.65 22.45 0.22 -1.11 16 26 C -0.17 -4.44 5.89 -20.02 -0.12 -4.56 16 27 C 0.54 16.88 7.60 86.50 0.66 17.54 16 28 O -0.54 -20.47 15.99 -4.44 -0.07 -20.54 16 29 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 1.05 7.22 -2.39 -0.02 1.04 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 33 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 34 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 35 H 0.00 -0.13 7.42 -2.39 -0.02 -0.14 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.14 3.08 6.59 -2.39 -0.02 3.06 16 38 H 0.18 1.99 7.00 -2.39 -0.02 1.97 16 39 H 0.21 2.32 7.96 -2.91 -0.02 2.30 16 40 H 0.14 2.17 7.35 -2.91 -0.02 2.15 16 41 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 42 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.13 3.12 7.78 -2.91 -0.02 3.10 16 Total: -1.00 -86.46 378.39 6.93 -79.53 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.05 Total: 5.19 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 6.70 Total: 23.42 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -2.73 Total: -106.02 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.12 Total: -49.83 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -86.46 6.93 -79.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603359166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.189 kcal (2) G-P(sol) polarization free energy of solvation -86.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds