Wall clock time and date at job start Sat Apr 11 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 120.00323 * 2 1 4 4 C 1.50701 * 109.47288 * 275.00038 * 3 2 1 5 5 H 1.08004 * 119.99704 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00377 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99856 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00106 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47277 * 59.99816 * 8 6 4 10 10 H 1.48500 * 109.47331 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46945 * 299.99938 * 8 6 4 12 12 S 1.65597 * 120.00136 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40634 * 150.68157 * 12 2 1 14 14 O 1.42100 * 106.40199 * 17.75395 * 12 2 1 15 15 N 1.65606 * 107.21718 * 264.21619 * 12 2 1 16 16 C 1.46505 * 119.99863 * 65.22429 * 15 12 2 17 17 H 1.09001 * 109.31140 * 335.62918 * 16 15 12 18 18 C 1.52902 * 109.39150 * 95.38463 * 16 15 12 19 19 N 1.47164 * 108.49835 * 170.61257 * 18 16 15 20 20 C 1.46894 * 110.99888 * 165.32989 * 19 18 16 21 21 C 1.46633 * 110.26819 * 288.76213 * 19 18 16 22 22 C 1.50618 * 110.50656 * 52.48765 * 21 19 18 23 23 C 1.38733 * 118.42414 * 162.69845 * 22 21 19 24 24 C 1.38018 * 120.37077 * 179.51984 * 23 22 21 25 25 C 1.38255 * 119.87459 * 0.30614 * 24 23 22 26 26 C 1.38041 * 119.82598 * 359.52016 * 25 24 23 27 27 C 1.37830 * 121.84631 * 342.40824 * 22 21 19 28 28 H 1.09001 * 109.47108 * 265.75165 * 1 2 3 29 29 H 1.09004 * 109.47015 * 25.74870 * 1 2 3 30 30 H 1.08997 * 109.47346 * 145.74867 * 1 2 3 31 31 H 1.09004 * 109.47250 * 34.99391 * 3 2 1 32 32 H 1.08998 * 109.47823 * 154.99716 * 3 2 1 33 33 H 0.97003 * 120.00260 * 180.02562 * 7 6 4 34 34 H 0.96998 * 120.00425 * 245.22183 * 15 12 2 35 35 H 1.09003 * 109.62819 * 290.31351 * 18 16 15 36 36 H 1.08998 * 109.62990 * 50.70782 * 18 16 15 37 37 H 1.09001 * 109.47655 * 59.99551 * 20 19 18 38 38 H 1.09003 * 109.47356 * 180.02562 * 20 19 18 39 39 H 1.09007 * 109.47106 * 299.99400 * 20 19 18 40 40 H 1.09008 * 109.26549 * 292.22548 * 21 19 18 41 41 H 1.09000 * 109.26862 * 172.76021 * 21 19 18 42 42 H 1.08001 * 119.81731 * 359.50530 * 23 22 21 43 43 H 1.08006 * 120.06059 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.09033 * 179.78332 * 25 24 23 45 45 H 1.08001 * 119.82752 * 180.29710 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 2.9998 2.9508 -1.6664 7 7 3.5017 3.6478 -0.6705 8 14 3.1789 3.5664 -3.4209 9 1 1.8327 3.7714 -4.0134 10 1 3.9213 4.8525 -3.4210 11 1 3.9255 2.5644 -4.2233 12 16 2.2930 -1.4341 0.0006 13 8 3.5229 -1.1877 -0.6670 14 8 1.3693 -2.4309 -0.4146 15 7 2.6761 -1.7782 1.5746 16 6 1.6128 -2.0556 2.5435 17 1 0.6874 -1.5884 2.2067 18 6 1.4077 -3.5668 2.6534 19 7 0.5051 -3.8345 3.7845 20 6 -0.0065 -5.2106 3.7355 21 6 1.1907 -3.5737 5.0542 22 6 1.7964 -2.1947 5.0533 23 6 2.1611 -1.6328 6.2681 24 6 2.7287 -0.3755 6.3131 25 6 2.9298 0.3316 5.1422 26 6 2.5709 -0.2276 3.9322 27 6 1.9992 -1.4902 3.8861 28 1 -0.3633 -0.0761 1.0248 29 1 -0.3633 0.9257 -0.4465 30 1 -0.3634 -0.8494 -0.5784 31 1 1.6501 2.0044 0.5894 32 1 3.1858 1.1178 0.4343 33 1 3.9646 4.4818 -0.8470 34 1 3.6045 -1.7961 1.8550 35 1 0.9628 -3.9439 1.7326 36 1 2.3673 -4.0551 2.8232 37 1 0.8279 -5.9104 3.7810 38 1 -0.6712 -5.3815 4.5823 39 1 -0.5565 -5.3608 2.8064 40 1 1.9793 -4.3129 5.1956 41 1 0.4746 -3.6516 5.8723 42 1 1.9997 -2.1821 7.1839 43 1 3.0111 0.0570 7.2617 44 1 3.3705 1.3171 5.1736 45 1 2.7324 0.3228 3.0171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611135127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:22 Heat of formation + Delta-G solvation = -36.063330 kcal Electronic energy + Delta-G solvation = -28657.145155 eV Core-core repulsion = 24801.424417 eV Total energy + Delta-G solvation = -3855.720738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.34002 -37.36050 -36.60415 -35.55671 -35.29980 -35.17556 -32.43170 -31.77740 -30.73236 -28.73491 -27.77092 -26.93464 -25.05452 -23.70920 -22.91873 -22.29852 -22.02034 -19.80950 -18.98757 -17.46913 -17.06906 -16.72165 -16.29936 -15.98439 -15.73922 -15.44451 -15.07355 -14.97325 -14.32234 -14.16914 -13.90509 -13.59466 -13.35349 -13.30250 -13.21232 -12.71623 -12.51242 -12.32757 -12.23656 -12.15054 -11.94665 -11.75886 -11.57124 -11.54775 -11.39787 -11.17936 -11.06617 -10.96172 -10.71872 -10.63188 -10.48530 -10.03854 -9.78941 -9.54650 -8.90780 -8.66950 -8.47646 -8.44172 -8.07635 -6.06438 -4.10065 1.12092 1.35085 1.39095 3.34357 3.37752 3.38996 3.43290 3.66738 3.80510 4.15674 4.45183 4.52355 4.57149 4.82903 4.88898 5.00409 5.06954 5.11198 5.15726 5.20011 5.27038 5.28929 5.34257 5.46453 5.51319 5.62571 5.68385 5.68920 5.79106 5.96506 6.00432 6.03265 6.03850 6.32009 6.38838 6.48066 6.56122 6.59374 6.77109 6.85567 6.99376 7.09448 7.23547 7.40481 7.59809 7.91245 8.20262 8.92007 9.55139 11.02072 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.003939 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.519626 B = 7106.297383 C = 8387.752148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.996 5.996 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.780 3.220 13 O -0.962 6.962 14 O -0.996 6.996 15 N -1.127 6.127 16 C 0.207 3.793 17 H 0.101 0.899 18 C 0.035 3.965 19 N -0.535 5.535 20 C 0.025 3.975 21 C 0.093 3.907 22 C -0.072 4.072 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.098 4.098 27 C -0.081 4.081 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.413 0.587 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 -13.091 15.487 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.839 5.839 3 C 0.137 3.863 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.787 3.213 13 O -0.946 6.946 14 O -0.979 6.979 15 N -0.884 5.884 16 C 0.099 3.901 17 H 0.119 0.881 18 C -0.095 4.095 19 N -0.260 5.260 20 C -0.123 4.123 21 C -0.035 4.035 22 C -0.073 4.073 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.116 4.116 27 C -0.082 4.082 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.228 -13.132 14.641 20.350 hybrid contribution 1.202 0.268 -0.326 1.274 sum -4.026 -12.864 14.315 19.662 Atomic orbital electron populations 1.21381 0.79994 1.03681 1.00081 1.57593 1.14332 1.23264 1.88679 1.19036 0.90768 0.78816 0.97691 1.21456 1.36142 1.06240 0.92926 0.92193 1.24916 0.95109 0.96485 0.97455 1.69901 1.37379 1.15312 1.30964 0.86582 0.78312 0.77969 0.84743 1.20170 1.21199 1.19998 1.02039 0.73422 0.73075 0.72753 1.93655 1.44868 1.85312 1.70749 1.93526 1.65200 1.58513 1.80657 1.56446 1.14961 1.87314 1.29678 1.19325 0.90127 0.94208 0.86418 0.88083 1.22742 0.95611 0.96093 0.95024 1.62174 1.36783 1.25036 1.01965 1.22399 0.99346 0.87318 1.03284 1.20992 0.96620 0.93088 0.92769 1.19497 0.99333 0.95659 0.92858 1.20926 1.00465 0.96034 0.96719 1.21076 0.99323 0.94769 0.98311 1.21190 1.00061 1.00127 0.92392 1.21295 0.97010 0.94495 0.98810 1.19656 0.99850 0.94879 0.93845 0.94283 0.90196 0.91645 0.94622 0.94769 0.92660 0.75357 0.88602 0.93617 0.95490 0.91145 0.90686 0.93503 0.89385 0.86233 0.86126 0.85701 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.62 10.36 59.84 0.62 2.24 16 2 N -1.00 -20.19 3.23 -123.05 -0.40 -20.58 16 3 C 0.26 6.32 5.05 -5.19 -0.03 6.29 16 4 C -0.53 -14.69 9.38 -34.44 -0.32 -15.02 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 S 2.78 53.96 5.97 -107.50 -0.64 53.32 16 13 O -0.96 -22.76 17.32 -57.17 -0.99 -23.75 16 14 O -1.00 -19.88 16.21 -57.17 -0.93 -20.81 16 15 N -1.13 -16.98 4.76 -5.92 -0.03 -17.00 16 16 C 0.21 2.85 2.90 -69.12 -0.20 2.65 16 17 H 0.10 1.44 6.98 -51.93 -0.36 1.08 16 18 C 0.03 0.44 5.17 -3.73 -0.02 0.42 16 19 N -0.54 -5.88 4.94 -244.48 -1.21 -7.09 16 20 C 0.02 0.21 9.54 60.06 0.57 0.78 16 21 C 0.09 0.91 5.25 -5.16 -0.03 0.88 16 22 C -0.07 -0.84 5.79 -104.63 -0.61 -1.44 16 23 C -0.12 -1.25 9.65 -39.48 -0.38 -1.63 16 24 C -0.12 -1.22 10.05 -39.66 -0.40 -1.62 16 25 C -0.12 -1.45 10.05 -39.65 -0.40 -1.85 16 26 C -0.10 -1.34 9.20 -39.49 -0.36 -1.70 16 27 C -0.08 -1.06 5.50 -104.60 -0.58 -1.64 16 28 H 0.04 0.56 7.41 -51.93 -0.38 0.18 16 29 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 30 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 31 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 32 H 0.03 0.88 7.77 -51.93 -0.40 0.47 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.41 5.66 8.76 -34.48 -0.30 5.36 16 35 H 0.10 1.27 7.74 -51.93 -0.40 0.87 16 36 H 0.05 0.55 8.05 -51.93 -0.42 0.13 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.63 8.10 -51.92 -0.42 0.21 16 40 H 0.05 0.43 8.13 -51.92 -0.42 0.00 16 41 H 0.09 0.73 8.13 -51.93 -0.42 0.30 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 44 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 45 H 0.13 1.97 7.70 -52.49 -0.40 1.56 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -33.26 378.58 -11.81 -45.06 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.81 Total: 3.43 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.22 Total: -9.96 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.90 Total: -69.76 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.92 Total: -44.55 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 53.96 SS G_CDS: -0.64 Total: 53.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.26 -11.81 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611135127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.000 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds