Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00232 * 2 1 4 4 C 1.50703 * 109.47067 * 274.99836 * 3 2 1 5 5 H 1.07995 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99794 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00615 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99704 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47133 * 119.99729 * 8 6 4 11 11 H 1.48497 * 109.47187 * 239.99592 * 8 6 4 12 12 S 1.65604 * 120.00064 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.39866 * 156.46479 * 12 2 1 14 14 O 1.42099 * 106.39937 * 23.54725 * 12 2 1 15 15 N 1.65594 * 107.22119 * 270.00885 * 12 2 1 16 16 C 1.46501 * 120.00276 * 65.15372 * 15 12 2 17 17 H 1.08996 * 109.38342 * 5.22535 * 16 15 12 18 18 C 1.52890 * 109.39167 * 245.42301 * 16 15 12 19 19 N 1.47161 * 108.51821 * 189.60481 * 18 16 15 20 20 C 1.46894 * 111.00369 * 307.83969 * 19 18 16 21 21 C 1.46634 * 110.24070 * 71.26049 * 19 18 16 22 22 C 1.50629 * 110.47886 * 307.39906 * 21 19 18 23 23 C 1.38723 * 118.42013 * 197.41944 * 22 21 19 24 24 C 1.38018 * 120.37530 * 180.40631 * 23 22 21 25 25 C 1.38262 * 119.86683 * 359.97438 * 24 23 22 26 26 C 1.38040 * 119.82964 * 359.90749 * 25 24 23 27 27 C 1.37837 * 121.84116 * 17.66226 * 22 21 19 28 28 H 1.08997 * 109.47169 * 270.00525 * 1 2 3 29 29 H 1.09007 * 109.46698 * 30.00417 * 1 2 3 30 30 H 1.08999 * 109.46961 * 149.99884 * 1 2 3 31 31 H 1.09006 * 109.46927 * 34.99187 * 3 2 1 32 32 H 1.09003 * 109.47514 * 154.99278 * 3 2 1 33 33 H 0.97004 * 120.00523 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99791 * 245.15649 * 15 12 2 35 35 H 1.09004 * 109.62707 * 69.89771 * 18 16 15 36 36 H 1.08998 * 109.79116 * 309.41213 * 18 16 15 37 37 H 1.09004 * 109.46893 * 59.99915 * 20 19 18 38 38 H 1.08998 * 109.47597 * 180.02562 * 20 19 18 39 39 H 1.09007 * 109.46911 * 300.00569 * 20 19 18 40 40 H 1.09000 * 109.30758 * 67.71272 * 21 19 18 41 41 H 1.09005 * 109.29766 * 187.09775 * 21 19 18 42 42 H 1.07997 * 119.81591 * 0.41731 * 23 22 21 43 43 H 1.08000 * 120.06710 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.08845 * 179.89286 * 25 24 23 45 45 H 1.07994 * 119.82564 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9290 1.1934 -2.2332 6 6 3.0008 2.9502 -1.6664 7 7 3.5036 3.6468 -0.6707 8 14 3.1799 3.5658 -3.4210 9 1 2.5323 2.6060 -4.3509 10 1 2.5292 4.8946 -3.5483 11 1 4.6209 3.6860 -3.7588 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1569 -0.5438 14 8 1.4114 -2.4067 -0.5435 15 7 2.5380 -1.8582 1.5825 16 6 1.3947 -2.1803 2.4401 17 1 0.4826 -2.1772 1.8433 18 6 1.2800 -1.1330 3.5480 19 7 0.2813 -1.5941 4.5255 20 6 -0.9797 -1.9503 3.8618 21 6 0.8087 -2.7261 5.2941 22 6 1.3154 -3.8011 4.3686 23 6 1.5074 -5.0762 4.8802 24 6 1.9782 -6.0896 4.0701 25 6 2.2599 -5.8339 2.7409 26 6 2.0670 -4.5663 2.2296 27 6 1.5935 -3.5474 3.0426 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6501 2.0043 0.5894 32 1 3.1858 1.1177 0.4344 33 1 3.9671 4.4805 -0.8473 34 1 3.4385 -1.8931 1.9414 35 1 0.9625 -0.1817 3.1211 36 1 2.2446 -1.0096 4.0404 37 1 -0.7989 -2.7498 3.1432 38 1 -1.7002 -2.2872 4.6071 39 1 -1.3760 -1.0777 3.3423 40 1 1.6259 -2.3818 5.9280 41 1 0.0172 -3.1351 5.9222 42 1 1.2871 -5.2771 5.9182 43 1 2.1262 -7.0803 4.4737 44 1 2.6300 -6.6238 2.1042 45 1 2.2867 -4.3667 1.1913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611135128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = -34.034715 kcal Electronic energy + Delta-G solvation = -28843.595739 eV Core-core repulsion = 24987.962969 eV Total energy + Delta-G solvation = -3855.632771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77292 -37.48036 -36.68264 -35.54717 -35.23959 -35.18633 -32.45377 -31.55201 -30.76479 -28.59218 -27.80840 -27.41517 -25.10543 -24.00602 -22.92588 -22.32330 -22.16435 -19.71372 -19.10361 -17.47243 -17.33535 -16.59767 -16.36252 -16.09463 -15.74567 -15.51226 -15.25543 -15.03614 -14.35726 -14.32780 -13.84930 -13.72736 -13.50349 -13.34199 -13.18806 -12.69985 -12.50768 -12.33171 -12.20664 -11.95316 -11.81455 -11.81278 -11.67323 -11.55245 -11.49695 -11.31473 -11.18038 -11.10213 -10.76993 -10.73544 -10.55239 -10.10588 -9.88276 -9.73545 -8.96986 -8.82143 -8.46344 -8.39528 -8.10856 -6.07835 -4.11869 1.01745 1.20787 1.27476 3.30261 3.36096 3.38108 3.43762 3.58196 3.82800 4.09018 4.40864 4.43694 4.54954 4.67842 4.77830 4.87125 4.92643 5.00837 5.08159 5.15633 5.25542 5.27598 5.35490 5.44536 5.52069 5.54136 5.61010 5.74213 5.77674 5.86321 5.87872 5.94224 6.01647 6.21924 6.26144 6.34815 6.44841 6.51457 6.73853 6.82605 6.83964 7.04309 7.23166 7.38595 7.57537 7.89583 8.18547 8.90775 9.53614 11.00728 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020015 B = 0.003537 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.622091 B = 7914.698835 C = 8574.594852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.994 5.994 3 C 0.258 3.742 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.777 3.223 13 O -0.961 6.961 14 O -0.997 6.997 15 N -1.123 6.123 16 C 0.165 3.835 17 H 0.100 0.900 18 C 0.039 3.961 19 N -0.524 5.524 20 C 0.010 3.990 21 C 0.088 3.912 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.096 4.096 27 C -0.090 4.090 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.414 0.586 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 -15.373 13.940 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.837 5.837 3 C 0.136 3.864 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.785 3.215 13 O -0.945 6.945 14 O -0.980 6.980 15 N -0.880 5.880 16 C 0.056 3.944 17 H 0.118 0.882 18 C -0.090 4.090 19 N -0.245 5.245 20 C -0.139 4.139 21 C -0.040 4.040 22 C -0.108 4.108 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.114 4.114 27 C -0.092 4.092 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.247 0.753 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.731 -15.249 13.459 21.424 hybrid contribution 0.685 -0.140 -1.089 1.295 sum -6.046 -15.389 12.369 20.649 Atomic orbital electron populations 1.21396 0.80249 1.03664 1.00105 1.57587 1.14217 1.23281 1.88598 1.19069 0.91011 0.78626 0.97724 1.21527 1.36102 1.06337 0.92954 0.92145 1.24927 0.95085 0.96507 0.97481 1.69923 1.37308 1.15291 1.30858 0.86466 0.78017 0.78513 0.84601 1.19649 1.20934 1.20794 1.02096 0.73507 0.73067 0.72832 1.93652 1.40599 1.84803 1.75418 1.93534 1.67608 1.60148 1.76715 1.56370 1.14159 1.85494 1.32008 1.20123 0.89403 0.91715 0.93169 0.88216 1.22747 0.96832 0.97961 0.91503 1.62692 1.04138 1.32548 1.25125 1.22560 0.91481 1.00937 0.98883 1.21213 1.00120 0.87900 0.94765 1.20422 1.00164 0.96027 0.94142 1.21018 1.00659 0.92428 0.99747 1.21108 0.99259 0.99048 0.94072 1.21145 1.00566 0.96842 0.95688 1.21188 0.97699 0.92445 1.00069 1.19805 1.00588 0.95551 0.93252 0.94394 0.90139 0.91630 0.94559 0.94413 0.92721 0.75259 0.88617 0.89493 0.94618 0.91168 0.90673 0.89070 0.89467 0.86016 0.86115 0.85960 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.65 59.85 0.64 2.16 16 2 N -0.99 -19.86 3.23 -123.05 -0.40 -20.26 16 3 C 0.26 6.29 5.08 -5.19 -0.03 6.27 16 4 C -0.53 -14.74 9.38 -34.44 -0.32 -15.06 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 S 2.78 53.60 5.99 -107.50 -0.64 52.96 16 13 O -0.96 -22.69 17.11 -57.17 -0.98 -23.67 16 14 O -1.00 -20.07 16.23 -57.17 -0.93 -21.00 16 15 N -1.12 -16.41 4.65 -5.93 -0.03 -16.44 16 16 C 0.17 2.13 2.26 -69.13 -0.16 1.97 16 17 H 0.10 1.33 6.26 -51.93 -0.33 1.01 16 18 C 0.04 0.46 5.66 -3.74 -0.02 0.44 16 19 N -0.52 -5.45 5.28 -244.49 -1.29 -6.74 16 20 C 0.01 0.09 8.82 60.06 0.53 0.62 16 21 C 0.09 0.80 5.54 -5.16 -0.03 0.77 16 22 C -0.11 -1.10 5.31 -104.62 -0.56 -1.66 16 23 C -0.12 -1.11 9.65 -39.48 -0.38 -1.49 16 24 C -0.12 -1.10 10.05 -39.65 -0.40 -1.49 16 25 C -0.12 -1.35 10.05 -39.64 -0.40 -1.74 16 26 C -0.10 -1.23 9.26 -39.49 -0.37 -1.59 16 27 C -0.09 -1.11 4.86 -104.60 -0.51 -1.62 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.36 8.07 -51.92 -0.42 0.94 16 30 H 0.07 1.03 7.02 -51.93 -0.36 0.66 16 31 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.41 5.45 8.96 -34.46 -0.31 5.14 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 37 H 0.04 0.37 5.54 -51.93 -0.29 0.09 16 38 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.65 8.00 -51.93 -0.42 0.24 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.74 7.70 -52.49 -0.40 1.33 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -33.57 374.90 -11.68 -45.25 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.68 Total: 3.43 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.09 Total: -10.78 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -0.98 Total: -68.58 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.91 Total: -44.67 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 53.60 SS G_CDS: -0.64 Total: 52.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.57 -11.68 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611135128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.214 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds