Wall clock time and date at job start Sat Apr 11 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47361 * 2 1 4 4 C 1.34818 * 116.99596 * 180.02562 * 3 2 1 5 5 O 1.21540 * 120.00408 * 359.97438 * 4 3 2 6 6 C 1.47107 * 119.99712 * 179.97438 * 4 3 2 7 7 N 1.30614 * 125.53970 * 180.27031 * 6 4 3 8 8 C 1.30648 * 115.90785 * 180.21643 * 7 6 4 9 9 C 1.50696 * 122.10981 * 179.76184 * 8 7 6 10 10 N 1.46900 * 109.47082 * 274.72032 * 9 8 7 11 11 C 1.46965 * 110.99928 * 169.99802 * 10 9 8 12 12 C 1.53051 * 109.36478 * 176.80885 * 11 10 9 13 13 N 1.46953 * 109.36263 * 58.40072 * 12 11 10 14 14 C 1.46900 * 111.00084 * 176.81102 * 13 12 11 15 15 C 1.50698 * 109.47171 * 64.48759 * 14 13 12 16 16 H 1.08004 * 119.99614 * 4.82620 * 15 14 13 17 17 C 1.37880 * 120.00350 * 184.81626 * 15 14 13 18 18 N 1.31519 * 119.99446 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00268 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47144 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47129 * 120.00241 * 19 17 15 22 22 H 1.48502 * 109.47218 * 240.00674 * 19 17 15 23 23 C 1.46957 * 110.88284 * 300.68153 * 13 12 11 24 24 C 1.46953 * 111.00102 * 46.20102 * 10 9 8 25 25 C 1.34295 * 115.78246 * 359.49688 * 8 7 6 26 26 S 1.71078 * 109.09025 * 0.26947 * 25 8 7 27 27 H 1.08993 * 109.47907 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46730 * 300.00403 * 1 2 3 29 29 H 1.09000 * 109.46954 * 59.99445 * 1 2 3 30 30 H 1.09004 * 109.46730 * 239.99597 * 2 1 3 31 31 H 1.09000 * 109.46954 * 120.00555 * 2 1 3 32 32 H 1.09000 * 109.47246 * 154.71479 * 9 8 7 33 33 H 1.09000 * 109.46810 * 34.71940 * 9 8 7 34 34 H 1.09000 * 109.48364 * 56.84383 * 11 10 9 35 35 H 1.09000 * 109.48758 * 296.77807 * 11 10 9 36 36 H 1.08998 * 109.48855 * 178.36930 * 12 11 10 37 37 H 1.08998 * 109.48710 * 298.43772 * 12 11 10 38 38 H 1.08993 * 109.47259 * 184.49509 * 14 13 12 39 39 H 1.09011 * 109.46884 * 304.49398 * 14 13 12 40 40 H 0.97001 * 119.99405 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.48521 * 299.35194 * 23 13 12 42 42 H 1.09000 * 109.48942 * 179.28974 * 23 13 12 43 43 H 1.08998 * 109.48781 * 303.15376 * 24 10 9 44 44 H 1.08998 * 109.49073 * 63.22395 * 24 10 9 45 45 H 1.07995 * 125.45964 * 180.28681 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3506 1.5454 -0.0005 5 8 4.0910 0.5815 -0.0005 6 6 3.9130 2.9048 -0.0011 7 7 5.1853 3.2000 -0.0067 8 6 5.4757 4.4738 -0.0017 9 6 6.8983 4.9710 -0.0018 10 7 7.4003 5.0191 1.3780 11 6 8.8482 5.2695 1.4032 12 6 9.3169 5.3914 2.8551 13 7 8.9862 4.1561 3.5792 14 6 9.4882 4.2042 4.9589 15 6 8.7810 5.3009 5.7128 16 1 7.9795 5.8502 5.2412 17 6 9.1571 5.6028 7.0045 18 7 10.1333 4.9340 7.5785 19 14 8.2801 6.9617 7.9392 20 1 7.2268 7.5554 7.0770 21 1 7.6572 6.3979 9.1637 22 1 9.2586 8.0117 8.3200 23 6 7.5384 3.9057 3.5539 24 6 7.0697 3.7838 2.1020 25 6 4.4266 5.3122 -0.0021 26 16 2.9803 4.3984 -0.0018 27 1 -0.3635 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 6.9341 5.9700 -0.4365 33 1 7.5191 4.2960 -0.5909 34 1 9.0663 6.1958 0.8717 35 1 9.3688 4.4420 0.9213 36 1 10.3953 5.5483 2.8771 37 1 8.8164 6.2358 3.3291 38 1 9.3005 3.2481 5.4473 39 1 10.5600 4.4030 4.9489 40 1 10.3980 5.1467 8.4871 41 1 7.0178 4.7333 4.0359 42 1 7.3202 2.9795 4.0855 43 1 5.9913 3.6269 2.0800 44 1 7.5701 2.9395 1.6281 45 1 4.4863 6.3904 -0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:28 Heat of formation + Delta-G solvation = -15.343826 kcal Electronic energy + Delta-G solvation = -27028.869954 eV Core-core repulsion = 23174.047681 eV Total energy + Delta-G solvation = -3854.822273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95357 -40.18650 -38.35428 -36.90090 -35.10294 -32.54745 -32.23350 -31.24150 -30.26818 -28.44439 -27.17213 -26.05077 -24.25629 -23.36855 -22.90349 -21.80651 -21.21978 -19.78456 -19.05006 -18.93690 -17.46597 -17.05718 -16.97261 -16.38342 -15.97643 -15.14764 -14.86356 -14.59938 -14.44076 -14.33588 -14.10150 -13.85960 -13.66904 -13.53621 -13.24728 -13.01577 -12.86418 -12.36982 -12.16491 -12.06108 -11.79579 -11.78046 -11.55512 -11.17839 -11.05215 -10.95982 -10.79309 -10.62236 -10.49466 -10.31752 -10.10665 -10.06077 -9.92777 -9.78260 -9.46924 -9.14426 -8.40160 -8.05438 -7.11080 -5.99123 -4.07863 -0.15333 0.83948 1.31504 1.80262 1.90294 2.68397 3.28322 3.36277 3.40569 3.97283 4.27719 4.43473 4.43938 4.51635 4.54675 4.75997 4.85582 4.91614 5.11724 5.22477 5.30585 5.31291 5.34953 5.43151 5.52836 5.61722 5.69247 5.74154 5.90041 5.91763 5.99665 6.11339 6.21050 6.36973 6.67191 6.82398 6.90049 7.12769 7.24651 7.27283 7.38912 7.43379 7.57173 7.94166 8.10936 8.32494 8.36019 9.03281 9.58736 11.05884 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.002648 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.131607 B =10570.131314 C =11182.104991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.353 6.353 4 C 0.548 3.452 5 O -0.466 6.466 6 C -0.013 4.013 7 N -0.377 5.377 8 C 0.064 3.936 9 C 0.126 3.874 10 N -0.532 5.532 11 C 0.060 3.940 12 C 0.066 3.934 13 N -0.543 5.543 14 C 0.186 3.814 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.065 3.935 24 C 0.065 3.935 25 C -0.238 4.238 26 S 0.230 5.770 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.027 0.973 39 H 0.034 0.966 40 H 0.261 0.739 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.802 -2.722 -19.992 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.270 6.270 4 C 0.387 3.613 5 O -0.350 6.350 6 C -0.285 4.285 7 N -0.096 5.096 8 C -0.074 4.074 9 C -0.004 4.004 10 N -0.258 5.258 11 C -0.068 4.068 12 C -0.063 4.063 13 N -0.268 5.268 14 C 0.061 3.939 15 C -0.585 4.585 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.064 4.064 24 C -0.064 4.064 25 C -0.380 4.380 26 S 0.484 5.516 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.221 -3.326 -19.832 27.818 hybrid contribution 0.520 1.012 0.789 1.384 sum -18.702 -2.314 -19.043 26.791 Atomic orbital electron populations 1.21829 0.92084 1.03309 1.03778 1.23165 0.95544 0.78840 1.03290 1.86510 1.22273 1.33587 1.84604 1.19156 0.81138 0.86797 0.74217 1.90936 1.60304 1.40589 1.43201 1.25732 0.92064 0.95907 1.14756 1.66485 1.15191 1.18798 1.09166 1.20137 0.98215 0.85874 1.03169 1.20717 0.87577 1.00447 0.91703 1.62382 1.15076 1.36749 1.11583 1.22255 0.86016 0.99926 0.98627 1.21904 0.99800 0.93411 0.91229 1.62677 1.12256 1.33379 1.18475 1.19737 0.95898 0.96385 0.81891 1.21816 1.18744 1.18953 0.98974 0.92258 1.24976 0.94962 0.96350 0.97626 1.69964 1.28357 1.40789 1.13976 0.86591 0.79705 0.82128 0.79918 1.19820 1.21008 1.20988 1.21935 0.90142 1.00928 0.93374 1.22217 0.99329 0.89764 0.95043 1.26805 0.96310 1.07046 1.07821 1.83924 1.08130 0.97198 1.62325 0.89833 0.91185 0.91318 0.90716 0.90550 0.88970 0.92862 0.91091 0.94422 0.91246 0.93379 0.95455 0.94813 0.92932 0.93514 0.91544 0.91873 0.94147 0.79211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 37.16 0.38 -0.33 16 2 C 0.07 0.48 6.20 37.16 0.23 0.71 16 3 O -0.35 -3.51 10.09 -40.81 -0.41 -3.92 16 4 C 0.55 7.02 7.95 34.33 0.27 7.30 16 5 O -0.47 -7.33 16.86 -19.29 -0.33 -7.66 16 6 C -0.01 -0.16 7.46 -14.47 -0.11 -0.27 16 7 N -0.38 -5.45 9.15 -7.72 -0.07 -5.52 16 8 C 0.06 0.81 4.76 -84.49 -0.40 0.40 16 9 C 0.13 1.60 5.70 -4.98 -0.03 1.57 16 10 N -0.53 -8.51 4.85 -235.91 -1.14 -9.66 16 11 C 0.06 0.96 5.58 -3.76 -0.02 0.94 16 12 C 0.07 1.31 5.32 -3.77 -0.02 1.29 16 13 N -0.54 -12.26 4.92 -235.91 -1.16 -13.42 16 14 C 0.19 4.95 5.14 -4.98 -0.03 4.92 16 15 C -0.55 -15.28 7.67 -34.44 -0.26 -15.54 16 16 H 0.06 1.67 5.81 -52.48 -0.31 1.36 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 C 0.07 1.38 5.24 -3.77 -0.02 1.36 16 24 C 0.06 1.17 4.86 -3.77 -0.02 1.15 16 25 C -0.24 -2.33 10.81 29.34 0.32 -2.01 16 26 S 0.23 2.05 23.06 -107.50 -2.48 -0.43 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.05 0.69 8.08 -51.93 -0.42 0.28 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 37 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.95 8.12 -51.92 -0.42 0.53 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 41 H 0.05 1.08 6.45 -51.93 -0.34 0.74 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.06 1.13 5.98 -51.93 -0.31 0.82 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -33.19 380.92 -10.72 -43.91 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -6.78 Total: -3.05 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 0.20 Total: 3.20 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.64 Total: -54.51 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.74 Total: -11.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.48 Total: -0.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.19 -10.72 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.563 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds