Wall clock time and date at job start Sat Apr 11 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81393 * 109.47289 * 2 1 4 4 C 1.81397 * 103.00002 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47342 * 179.97438 * 4 3 2 6 6 C 1.35314 * 126.66608 * 90.30748 * 5 4 3 7 7 C 1.42276 * 103.92323 * 180.11166 * 6 5 4 8 8 C 1.48327 * 126.93771 * 179.91057 * 7 6 5 9 9 O 1.21494 * 120.00405 * 359.71084 * 8 7 6 10 10 N 1.34775 * 120.00095 * 179.71461 * 8 7 6 11 11 C 1.46496 * 120.00195 * 180.02562 * 10 8 7 12 12 C 1.53033 * 109.46309 * 275.06146 * 11 10 8 13 13 C 1.53189 * 109.31920 * 178.61403 * 12 11 10 14 14 N 1.46933 * 108.77281 * 54.63678 * 13 12 11 15 15 C 1.36937 * 120.63020 * 126.41605 * 14 13 12 16 16 H 1.07996 * 119.99900 * 331.83017 * 15 14 13 17 17 C 1.38809 * 119.99930 * 151.82506 * 15 14 13 18 18 N 1.31618 * 119.99954 * 343.07449 * 17 15 14 19 19 Si 1.86794 * 119.99732 * 163.06796 * 17 15 14 20 20 H 1.48501 * 109.47597 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47152 * 120.00388 * 19 17 15 22 22 H 1.48506 * 109.47344 * 240.00273 * 19 17 15 23 23 C 1.46922 * 118.73915 * 306.39450 * 14 13 12 24 24 C 1.53043 * 109.46026 * 154.99385 * 11 10 8 25 25 N 1.30984 * 106.12126 * 359.65284 * 7 6 5 26 26 O 1.20911 * 111.43804 * 0.22111 * 25 7 6 27 27 H 1.08999 * 109.47263 * 300.00116 * 1 2 3 28 28 H 1.08999 * 109.47010 * 59.99875 * 1 2 3 29 29 H 1.08999 * 109.47439 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46536 * 239.99764 * 2 1 3 31 31 H 1.08999 * 109.47010 * 120.00125 * 2 1 3 32 32 H 1.08999 * 109.47084 * 60.00150 * 4 3 2 33 33 H 1.08998 * 109.47159 * 300.00107 * 4 3 2 34 34 H 1.07999 * 128.04203 * 0.02562 * 6 5 4 35 35 H 0.97005 * 119.99989 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.46353 * 35.02758 * 11 10 8 37 37 H 1.09005 * 109.49824 * 298.57196 * 12 11 10 38 38 H 1.09002 * 109.49331 * 58.66238 * 12 11 10 39 39 H 1.09006 * 109.58402 * 294.85495 * 13 12 11 40 40 H 1.08992 * 109.70768 * 174.49711 * 13 12 11 41 41 H 0.97003 * 119.99436 * 179.97438 * 18 17 15 42 42 H 1.09011 * 109.58806 * 293.82292 * 23 14 13 43 43 H 1.08994 * 109.70870 * 173.46682 * 23 14 13 44 44 H 1.09001 * 109.49898 * 301.33903 * 24 11 10 45 45 H 1.09006 * 109.49817 * 61.43377 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 -0.0008 5 6 4.5965 2.8608 -0.0015 6 6 4.9558 3.5851 1.0835 7 6 5.5245 4.7673 0.5329 8 6 6.0860 5.9184 1.2811 9 8 6.0845 5.9124 2.4960 10 7 6.5979 6.9712 0.6132 11 6 7.1530 8.1079 1.3521 12 6 6.0262 9.0753 1.7213 13 6 6.6050 10.2449 2.5236 14 7 7.6950 10.8553 1.7502 15 6 7.6950 12.1987 1.4849 16 1 6.7605 12.7356 1.4166 17 6 8.8962 12.8704 1.3039 18 7 10.0236 12.3224 1.7052 19 14 8.9125 14.5519 0.4906 20 1 7.5250 14.9432 0.1345 21 1 9.4823 15.5508 1.4303 22 1 9.7434 14.4990 -0.7391 23 6 8.7853 9.9969 1.2673 24 6 8.1820 8.8300 0.4792 25 7 5.4573 4.6314 -0.7682 26 8 4.9456 3.5803 -1.0768 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2398 0.9543 -0.8910 33 1 4.2406 0.9540 0.8890 34 1 4.8370 3.3267 2.1254 35 1 6.5995 6.9760 -0.3569 36 1 7.6359 7.7492 2.2611 37 1 5.5589 9.4536 0.8121 38 1 5.2820 8.5540 2.3235 39 1 6.9920 9.8795 3.4748 40 1 5.8270 10.9860 2.7062 41 1 10.8630 12.7917 1.5783 42 1 9.3501 9.6112 2.1161 43 1 9.4466 10.5722 0.6195 44 1 8.9722 8.1342 0.1972 45 1 7.6945 9.2107 -0.4184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613657293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:30 Heat of formation + Delta-G solvation = 21.051797 kcal Electronic energy + Delta-G solvation = -26225.781836 eV Core-core repulsion = 22372.537796 eV Total energy + Delta-G solvation = -3853.244040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.30017 -41.09963 -39.04369 -36.17471 -35.36223 -34.68544 -33.83222 -33.61074 -31.86965 -31.23782 -29.18026 -27.39252 -25.78505 -24.45413 -24.06679 -23.87264 -23.26026 -21.42233 -20.85604 -19.15150 -19.07651 -18.63662 -17.93534 -17.34437 -17.06471 -16.77824 -16.14261 -15.85702 -15.81066 -15.54346 -15.42499 -15.36586 -15.02911 -14.98368 -14.75666 -14.38176 -14.16562 -13.98906 -13.26985 -13.19175 -13.06462 -12.76092 -12.67004 -12.64768 -12.59057 -12.30728 -12.23367 -12.04566 -11.91630 -11.70681 -11.65225 -11.53464 -11.29703 -11.06161 -10.59041 -10.48195 -10.22020 -8.73699 -8.73518 -7.89964 -5.35627 -0.24803 0.16646 1.04861 1.46351 1.48517 1.56924 1.59165 1.68141 1.86829 1.95311 2.50385 2.74848 3.23749 3.27897 3.62064 3.73721 3.78534 3.93116 3.94424 4.03475 4.11046 4.12469 4.24122 4.32972 4.39821 4.48377 4.59123 4.59295 4.69454 4.76985 4.79003 4.92375 4.92847 4.96077 4.97967 5.08623 5.23916 5.28353 5.33189 5.42618 5.62327 5.67275 6.23293 6.37125 6.80549 6.92349 7.12334 7.81271 8.34250 9.17451 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.001785 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.088679 B =15678.984809 C =15778.621791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 S -0.301 6.301 4 C 0.002 3.998 5 C -0.010 4.010 6 C -0.162 4.162 7 C -0.043 4.043 8 C 0.595 3.405 9 O -0.554 6.554 10 N -0.697 5.697 11 C 0.161 3.839 12 C -0.126 4.126 13 C 0.146 3.854 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.067 0.933 17 C -0.048 4.048 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.293 1.293 22 H -0.288 1.288 23 C 0.180 3.820 24 C -0.130 4.130 25 N -0.335 5.335 26 O 0.138 5.862 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.197 0.803 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.013 0.987 40 H 0.060 0.940 41 H 0.251 0.749 42 H -0.001 1.001 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.426 -30.018 -6.543 34.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.225 4.225 3 S -0.075 6.075 4 C -0.145 4.145 5 C -0.074 4.074 6 C -0.188 4.188 7 C -0.200 4.200 8 C 0.380 3.620 9 O -0.430 6.430 10 N -0.348 5.348 11 C 0.057 3.943 12 C -0.166 4.166 13 C 0.020 3.980 14 N -0.332 5.332 15 C -0.394 4.394 16 H 0.085 0.915 17 C -0.244 4.244 18 N -0.580 5.580 19 Si 0.797 3.203 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.215 1.215 23 C 0.054 3.946 24 C -0.170 4.170 25 N -0.033 5.033 26 O 0.058 5.942 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.214 0.786 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.469 -28.174 -6.669 32.826 hybrid contribution 0.982 -0.049 0.213 1.006 sum -14.488 -28.223 -6.456 32.375 Atomic orbital electron populations 1.21547 0.92027 1.03649 1.02612 1.23440 1.00228 0.92073 1.06732 1.87794 1.04406 1.16929 1.98355 1.21819 0.92388 0.89836 1.10475 1.23799 1.01611 0.97232 0.84790 1.22645 1.01775 0.91717 1.02616 1.23414 1.06965 0.99146 0.90481 1.17135 0.77563 0.81085 0.86220 1.90788 1.57940 1.80553 1.13762 1.46022 1.59855 1.17788 1.11104 1.20832 0.93991 0.84410 0.95028 1.22203 0.97342 0.96334 1.00716 1.20956 0.90819 0.93831 0.92429 1.44342 1.23854 1.04300 1.60723 1.19547 0.92281 0.85329 1.42258 0.91499 1.25806 0.95762 1.01401 1.01417 1.70183 0.98090 1.40312 1.49444 0.85195 0.77814 0.79648 0.77684 1.19175 1.21983 1.21463 1.20551 0.89651 0.89353 0.95077 1.22292 0.97960 0.97884 0.98845 1.74196 1.12568 1.01130 1.15445 1.84772 1.54754 1.21088 1.33603 0.92442 0.92387 0.88943 0.88186 0.88205 0.84724 0.83717 0.78629 0.75120 0.91268 0.91738 0.91882 0.96917 0.92157 0.93976 0.98258 0.91723 0.90477 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.92 71.98 0.71 -0.07 16 2 C -0.08 -0.38 6.66 71.98 0.48 0.10 16 3 S -0.30 -3.63 21.72 -56.49 -1.23 -4.86 16 4 C 0.00 0.02 6.50 71.24 0.46 0.48 16 5 C -0.01 -0.16 6.73 25.01 0.17 0.01 16 6 C -0.16 -3.20 10.92 22.60 0.25 -2.95 16 7 C -0.04 -1.10 7.19 42.96 0.31 -0.79 16 8 C 0.60 18.77 7.81 86.93 0.68 19.45 16 9 O -0.55 -20.72 16.61 -3.70 -0.06 -20.78 16 10 N -0.70 -21.13 5.07 -444.84 -2.26 -23.39 16 11 C 0.16 5.73 2.41 45.02 0.11 5.84 16 12 C -0.13 -4.66 5.65 30.67 0.17 -4.49 16 13 C 0.15 6.39 6.52 86.36 0.56 6.95 16 14 N -0.61 -31.08 2.99 -699.10 -2.09 -33.17 16 15 C -0.26 -14.65 9.58 84.03 0.81 -13.84 16 16 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 17 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 18 N -0.93 -55.31 11.19 21.65 0.24 -55.06 16 19 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 C 0.18 8.70 5.30 86.36 0.46 9.16 16 24 C -0.13 -4.83 5.55 30.67 0.17 -4.66 16 25 N -0.34 -8.14 11.84 -49.51 -0.59 -8.72 16 26 O 0.14 2.72 11.18 71.91 0.80 3.52 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.41 10.97 8.36 -92.70 -0.78 10.19 16 36 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 37 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 41 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.00 -0.04 8.14 -2.38 -0.02 -0.05 16 43 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 44 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -70.57 387.23 2.83 -67.74 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.22 Total: 14.84 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 5.76 Total: 12.90 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -4.69 Total: -120.35 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.74 Total: -17.26 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.23 Total: -4.86 kcal Total: -70.57 2.83 -67.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613657293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.791 kcal (2) G-P(sol) polarization free energy of solvation -70.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds