Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47295 * 2 1 4 4 C 1.46504 * 120.00167 * 84.99944 * 3 2 1 5 5 C 1.50695 * 109.46845 * 85.00041 * 4 3 2 6 6 H 1.08000 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99740 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99934 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99878 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47218 * 90.00337 * 9 7 5 11 11 H 1.48499 * 109.46835 * 210.00103 * 9 7 5 12 12 H 1.48506 * 109.47112 * 329.99750 * 9 7 5 13 13 S 1.65599 * 120.00128 * 264.72679 * 3 2 1 14 14 O 1.42096 * 106.40375 * 203.53596 * 13 3 2 15 15 O 1.42104 * 106.40139 * 336.46159 * 13 3 2 16 16 N 1.65604 * 107.21819 * 89.99652 * 13 3 2 17 17 C 1.46497 * 119.99854 * 65.00668 * 16 13 3 18 18 C 1.52999 * 109.47370 * 164.46854 * 17 16 13 19 19 C 1.50703 * 115.54624 * 304.08544 * 18 17 16 20 20 C 1.38217 * 119.61819 * 314.26494 * 19 18 17 21 21 C 1.38638 * 119.16245 * 179.97438 * 20 19 18 22 22 C 1.38671 * 118.41517 * 0.02562 * 21 20 19 23 23 C 1.38179 * 119.16922 * 359.97438 * 22 21 20 24 24 N 1.31864 * 119.61628 * 133.99098 * 19 18 17 25 25 C 1.52998 * 117.50420 * 158.41647 * 18 17 16 26 26 C 1.53000 * 117.50348 * 89.75167 * 18 17 16 27 27 H 1.09001 * 109.46880 * 299.99782 * 1 2 3 28 28 H 1.09005 * 109.47165 * 59.99774 * 1 2 3 29 29 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46880 * 240.00218 * 2 1 3 31 31 H 1.09002 * 109.47388 * 119.99769 * 2 1 3 32 32 H 1.09003 * 109.47370 * 205.00636 * 4 3 2 33 33 H 1.09001 * 109.46667 * 325.00027 * 4 3 2 34 34 H 0.97002 * 120.00175 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00322 * 244.99899 * 16 13 3 36 36 H 1.09003 * 109.46691 * 284.46342 * 17 16 13 37 37 H 1.08996 * 109.47832 * 44.46181 * 17 16 13 38 38 H 1.07998 * 120.42643 * 359.95523 * 20 19 18 39 39 H 1.07995 * 120.79000 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.41519 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.61968 * 179.97438 * 23 22 21 42 42 H 1.09000 * 117.49358 * 359.97438 * 25 18 17 43 43 H 1.08994 * 117.50091 * 145.02143 * 25 18 17 44 44 H 1.08995 * 117.50221 * 214.98480 * 26 18 17 45 45 H 1.09006 * 117.49813 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.4948 1.7888 1.8823 6 1 4.1724 1.1117 1.3835 7 6 3.8526 2.3606 3.0849 8 7 5.0191 2.0818 3.6243 9 14 2.6803 3.5312 3.9479 10 1 1.7958 2.7628 4.8602 11 1 3.4592 4.5227 4.7324 12 1 1.8540 4.2389 2.9370 13 16 2.4187 2.1179 -1.4280 14 8 3.3333 3.1553 -1.1018 15 8 2.7201 1.0761 -2.3463 16 7 1.0521 2.8610 -1.9962 17 6 0.4571 3.9711 -1.2480 18 6 -0.5303 4.7198 -2.1454 19 6 0.0341 5.2355 -3.4441 20 6 1.2507 5.8915 -3.4476 21 6 1.7614 6.3615 -4.6477 22 6 1.0255 6.1537 -5.8045 23 6 -0.1834 5.4893 -5.7234 24 7 -0.6359 5.0510 -4.5648 25 6 -1.6097 5.5607 -1.4609 26 6 -1.9846 4.2445 -2.1465 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0922 3.1803 1.0756 33 1 1.3618 1.8097 1.9453 34 1 5.2710 2.4844 4.4701 35 1 0.6457 2.5614 -2.8244 36 1 -0.0682 3.5812 -0.3760 37 1 1.2428 4.6534 -0.9238 38 1 1.7966 6.0363 -2.5270 39 1 2.7096 6.8773 -4.6808 40 1 1.3930 6.5060 -6.7571 41 1 -0.7627 5.3238 -6.6198 42 1 -1.6166 5.5802 -0.3711 43 1 -1.9119 6.4867 -1.9500 44 1 -2.5332 4.3051 -3.0864 45 1 -2.2379 3.3980 -1.5082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619713176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = -11.611854 kcal Electronic energy + Delta-G solvation = -28500.005131 eV Core-core repulsion = 24645.344688 eV Total energy + Delta-G solvation = -3854.660442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60914 -37.95286 -36.67497 -36.18363 -35.20595 -34.06439 -32.59817 -32.51382 -31.15488 -30.27992 -27.14678 -26.54131 -24.03872 -23.60053 -22.92091 -22.40566 -21.56521 -20.12067 -18.81055 -17.53924 -17.24871 -16.90465 -16.57018 -16.28022 -16.17779 -15.53436 -15.08896 -14.66791 -14.51570 -14.20177 -13.93370 -13.71799 -13.49519 -13.31760 -13.23292 -12.77133 -12.63908 -12.48139 -12.11490 -11.96501 -11.90737 -11.61597 -11.47927 -11.41260 -11.30826 -11.12213 -10.97121 -10.70389 -10.57871 -10.49057 -10.32670 -10.18947 -9.98988 -9.60542 -9.55890 -9.31343 -8.99285 -8.60661 -8.15203 -6.08964 -4.08134 0.93378 1.13268 1.15945 3.23923 3.28017 3.30362 3.33602 3.55181 3.76378 3.99238 4.11148 4.36583 4.44083 4.48192 4.69903 4.83668 4.87658 4.94923 5.02145 5.08078 5.18731 5.28426 5.35079 5.41676 5.50240 5.57016 5.60522 5.65730 5.67389 5.77902 5.82409 5.90541 6.00836 6.05163 6.05908 6.11879 6.21864 6.47614 6.52583 6.54983 6.69770 7.06969 7.12353 7.44663 7.57306 7.83229 8.48401 8.96417 9.49901 11.04721 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.003997 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.951019 B = 7004.419768 C = 7234.393692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.986 5.986 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.264 1.264 13 S 2.782 3.218 14 O -0.962 6.962 15 O -0.994 6.994 16 N -1.131 6.131 17 C 0.163 3.837 18 C -0.099 4.099 19 C 0.171 3.829 20 C -0.156 4.156 21 C -0.073 4.073 22 C -0.180 4.180 23 C 0.097 3.903 24 N -0.481 5.481 25 C -0.152 4.152 26 C -0.147 4.147 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.411 0.589 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.154 6.933 -14.366 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 N -0.827 5.827 4 C 0.104 3.896 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.789 3.211 14 O -0.945 6.945 15 O -0.978 6.978 16 N -0.889 5.889 17 C 0.036 3.964 18 C -0.101 4.101 19 C 0.034 3.966 20 C -0.176 4.176 21 C -0.099 4.099 22 C -0.200 4.200 23 C -0.060 4.060 24 N -0.190 5.190 25 C -0.190 4.190 26 C -0.184 4.184 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.171 0.829 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.861 6.607 -14.412 21.730 hybrid contribution -0.070 0.977 0.326 1.033 sum -14.931 7.585 -14.086 21.883 Atomic orbital electron populations 1.22245 0.97161 1.01595 1.01897 1.21175 0.92987 0.82872 1.03933 1.57491 1.81156 1.21644 1.22370 1.19425 0.98004 0.91089 0.81081 1.21378 1.00922 1.28844 1.05850 0.90457 1.24875 0.95103 0.96054 0.96947 1.69895 1.20609 1.43980 1.18829 0.86912 0.81401 0.81552 0.80182 1.20068 1.20913 1.18891 1.01953 0.73232 0.73255 0.72617 1.93622 1.59457 1.57633 1.83816 1.93543 1.83256 1.57313 1.63707 1.56187 1.49901 1.46810 1.36049 1.20696 0.95730 0.87596 0.92379 1.20178 0.91262 1.04791 0.93880 1.20050 0.91085 0.93561 0.91936 1.22016 0.96831 0.98962 0.99754 1.21639 0.99421 0.96611 0.92258 1.22133 0.96784 1.01603 0.99458 1.22687 0.93852 0.93990 0.95479 1.67360 1.34830 1.18568 0.98230 1.23068 0.99960 0.95809 1.00189 1.23048 0.94869 0.97511 1.02988 0.92209 0.93156 0.92092 0.90354 0.89476 0.95038 0.95326 0.92539 0.75661 0.90737 0.89724 0.84291 0.84647 0.84916 0.82857 0.87657 0.88551 0.87397 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.12 1.96 6.40 -4.04 -0.03 1.94 16 3 N -0.99 -19.40 2.82 -115.66 -0.33 -19.73 16 4 C 0.23 5.14 4.16 -5.19 -0.02 5.12 16 5 C -0.53 -14.86 9.94 -34.44 -0.34 -15.20 16 6 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -27.26 13.96 55.43 0.77 -26.48 16 9 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 13 S 2.78 54.00 6.10 -107.50 -0.66 53.34 16 14 O -0.96 -22.27 16.57 -57.17 -0.95 -23.22 16 15 O -0.99 -20.93 16.69 -57.17 -0.95 -21.89 16 16 N -1.13 -16.41 5.80 -10.62 -0.06 -16.47 16 17 C 0.16 2.13 5.73 -4.04 -0.02 2.11 16 18 C -0.10 -1.11 2.01 -155.66 -0.31 -1.43 16 19 C 0.17 2.08 5.83 -82.58 -0.48 1.60 16 20 C -0.16 -1.88 9.40 -39.44 -0.37 -2.26 16 21 C -0.07 -0.76 10.18 -39.27 -0.40 -1.16 16 22 C -0.18 -1.64 10.11 -39.44 -0.40 -2.04 16 23 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 24 N -0.48 -5.71 9.36 -9.47 -0.09 -5.80 16 25 C -0.15 -1.42 9.96 -26.69 -0.27 -1.68 16 26 C -0.15 -1.43 9.71 -26.69 -0.26 -1.69 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.29 6.91 -51.93 -0.36 0.94 16 31 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 32 H 0.03 0.71 6.67 -51.93 -0.35 0.36 16 33 H 0.03 0.61 7.53 -51.93 -0.39 0.21 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.41 5.41 8.54 -34.48 -0.29 5.12 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.08 1.19 7.05 -51.93 -0.37 0.82 16 38 H 0.14 1.68 7.32 -52.49 -0.38 1.29 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.11 1.08 7.59 -51.93 -0.39 0.69 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -35.09 387.07 -10.68 -45.78 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.77 Total: 6.55 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.82 Total: -13.80 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: 0.30 Total: -68.48 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.90 Total: -45.11 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 16 Polarization: 54.00 SS G_CDS: -0.66 Total: 53.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.09 -10.68 -45.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619713176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.165 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds