Wall clock time and date at job start Sat Apr 11 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29831 * 119.99815 * 2 1 4 4 N 1.40101 * 119.99627 * 0.02562 * 3 2 1 5 5 C 1.34785 * 119.99483 * 179.97438 * 4 3 2 6 6 O 1.21307 * 120.00051 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99487 * 180.02562 * 5 4 3 8 8 C 1.50703 * 109.46556 * 180.02562 * 7 5 4 9 9 C 1.38676 * 120.41597 * 270.24405 * 8 7 5 10 10 C 1.38627 * 118.41947 * 180.24193 * 9 8 7 11 11 C 1.38228 * 119.16166 * 359.76328 * 10 9 8 12 12 N 1.31855 * 120.76369 * 359.97438 * 11 10 9 13 13 C 1.31883 * 121.72719 * 0.02562 * 12 11 10 14 14 C 1.47357 * 120.00002 * 180.02562 * 2 1 3 15 15 C 1.39801 * 120.08921 * 359.72598 * 14 2 1 16 16 C 1.37725 * 119.91311 * 179.73990 * 15 14 2 17 17 C 1.39083 * 120.08401 * 0.53514 * 16 15 14 18 18 O 1.35652 * 119.91109 * 179.69472 * 17 16 15 19 19 C 1.34804 * 116.99708 * 174.47118 * 18 17 16 20 20 H 1.08008 * 120.00268 * 5.06147 * 19 18 17 21 21 C 1.38642 * 120.00044 * 185.05703 * 19 18 17 22 22 N 1.31557 * 120.00374 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99709 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47365 * 89.99538 * 23 21 19 25 25 H 1.48502 * 109.46977 * 209.99889 * 23 21 19 26 26 H 1.48503 * 109.47115 * 329.99324 * 23 21 19 27 27 C 1.39080 * 120.17481 * 359.72286 * 17 16 15 28 28 C 1.37718 * 120.08644 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.46856 * 90.00369 * 1 2 3 30 30 H 1.09008 * 109.46956 * 209.99848 * 1 2 3 31 31 H 1.08999 * 109.47675 * 329.99651 * 1 2 3 32 32 H 0.96999 * 120.00390 * 0.02562 * 4 3 2 33 33 H 1.08992 * 109.47561 * 60.00001 * 7 5 4 34 34 H 1.09006 * 109.47059 * 299.99438 * 7 5 4 35 35 H 1.08001 * 120.79113 * 359.97438 * 9 8 7 36 36 H 1.08004 * 120.42206 * 179.73164 * 10 9 8 37 37 H 1.07998 * 119.62058 * 180.02562 * 11 10 9 38 38 H 1.07996 * 119.62306 * 179.97438 * 13 12 11 39 39 H 1.07997 * 120.04689 * 359.97438 * 15 14 2 40 40 H 1.07999 * 119.95938 * 180.25473 * 16 15 14 41 41 H 0.97004 * 120.00368 * 180.02562 * 22 21 19 42 42 H 1.08003 * 119.95688 * 180.02562 * 27 17 16 43 43 H 1.08007 * 120.04009 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4555 2.3376 0.0005 5 6 2.1294 3.5049 0.0011 6 8 3.3425 3.5049 0.0015 7 6 1.3758 4.8100 0.0022 8 6 2.3551 5.9554 0.0020 9 6 2.8161 6.4852 1.1978 10 6 3.7123 7.5417 1.1493 11 6 4.1175 8.0253 -0.0806 12 7 3.6622 7.4933 -1.1978 13 6 2.8090 6.4876 -1.1897 14 6 2.2438 -1.2761 -0.0006 15 6 1.5467 -2.4879 0.0047 16 6 2.2389 -3.6786 -0.0013 17 6 3.6297 -3.6764 -0.0013 18 8 4.3080 -4.8511 -0.0009 19 6 5.6494 -4.7833 -0.1167 20 1 6.1431 -3.8227 -0.1219 21 6 6.3952 -5.9466 -0.2288 22 7 7.7043 -5.8805 -0.3413 23 14 5.5412 -7.6080 -0.2203 24 1 5.1923 -7.9924 -1.6116 25 1 6.4494 -8.6284 0.3623 26 1 4.3031 -7.5240 0.5954 27 6 4.3269 -2.4729 -0.0011 28 6 3.6419 -1.2782 -0.0003 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 0.4855 2.3376 0.0013 33 1 0.7495 4.8671 0.8924 34 1 0.7488 4.8683 -0.8876 35 1 2.4816 6.0870 2.1443 36 1 4.0888 7.9818 2.0609 37 1 4.8158 8.8479 -0.1270 38 1 2.4577 6.0781 -2.1252 39 1 0.4667 -2.4905 0.0096 40 1 1.7011 -4.6151 -0.0014 41 1 8.2261 -6.6945 -0.4201 42 1 5.4070 -2.4753 -0.0015 43 1 4.1841 -0.3441 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728784842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:38 Heat of formation + Delta-G solvation = 43.386564 kcal Electronic energy + Delta-G solvation = -26646.891670 eV Core-core repulsion = 22659.172187 eV Total energy + Delta-G solvation = -3987.719483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67963 -39.57494 -39.22888 -37.65590 -36.11116 -33.90319 -32.98781 -32.42840 -32.17049 -30.60665 -29.40142 -28.36244 -27.73095 -25.46234 -23.87718 -23.22452 -22.18926 -21.93164 -20.62074 -19.66833 -17.95740 -17.74677 -17.36470 -17.20566 -16.79926 -16.50367 -15.45408 -15.27752 -15.10143 -14.72185 -14.34978 -14.17824 -14.09809 -13.97871 -13.86180 -13.79176 -13.56305 -13.35370 -12.83725 -12.72317 -12.61314 -12.39741 -12.15252 -11.96426 -11.84070 -11.34620 -11.29622 -10.89180 -10.83367 -10.29664 -10.23077 -10.06114 -9.94436 -9.74335 -9.45390 -9.27770 -9.18926 -8.77635 -8.38995 -7.26108 -6.53461 -4.18413 0.76979 1.00283 1.25368 2.08910 2.38541 2.49767 2.95200 3.16240 3.19588 3.32542 3.54022 4.05230 4.13688 4.29837 4.41808 4.44776 4.47633 4.56610 4.64236 4.67299 4.71097 4.85747 4.93364 4.98192 5.00183 5.00724 5.27012 5.30571 5.44931 5.51006 5.62458 5.72091 5.78897 5.89476 5.95775 6.07669 6.22226 6.38551 6.41688 6.71775 6.91682 7.02686 7.06897 7.22133 7.46720 7.58683 7.69138 7.70210 7.90648 8.41582 8.79946 9.39641 10.53023 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.001865 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.735094 B =15009.930456 C =16245.566028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 N -0.263 5.263 4 N -0.587 5.587 5 C 0.526 3.474 6 O -0.498 6.498 7 C -0.092 4.092 8 C -0.120 4.120 9 C -0.059 4.059 10 C -0.172 4.172 11 C 0.098 3.902 12 N -0.484 5.484 13 C 0.116 3.884 14 C -0.157 4.157 15 C -0.045 4.045 16 C -0.198 4.198 17 C 0.174 3.826 18 O -0.205 6.205 19 C -0.390 4.390 20 H 0.111 0.889 21 C 0.065 3.935 22 N -0.869 5.869 23 Si 0.907 3.093 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.258 1.258 27 C -0.230 4.230 28 C -0.023 4.023 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.379 0.621 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.282 0.718 42 H 0.137 0.863 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.111 21.107 2.408 27.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.017 4.017 3 N -0.069 5.069 4 N -0.330 5.330 5 C 0.311 3.689 6 O -0.369 6.369 7 C -0.134 4.134 8 C -0.122 4.122 9 C -0.085 4.085 10 C -0.191 4.191 11 C -0.059 4.059 12 N -0.193 5.193 13 C -0.041 4.041 14 C -0.160 4.160 15 C -0.065 4.065 16 C -0.217 4.217 17 C 0.119 3.881 18 O -0.108 6.108 19 C -0.466 4.466 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.505 5.505 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.182 1.182 27 C -0.249 4.249 28 C -0.043 4.043 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.218 0.782 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.155 0.845 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.928 21.681 1.601 26.950 hybrid contribution -1.664 -1.290 0.865 2.276 sum -17.592 20.391 2.467 27.044 Atomic orbital electron populations 1.21341 0.92999 1.03715 1.03536 1.23328 0.93014 0.91820 0.93583 1.75315 1.22674 0.90460 1.18483 1.46925 1.08203 1.03700 1.74178 1.20338 0.88437 0.83314 0.76770 1.90772 1.13664 1.86794 1.45710 1.20557 0.97421 0.89497 1.05887 1.20227 0.99784 0.97372 0.94861 1.21449 0.94731 0.94373 0.97993 1.22124 0.99103 0.98138 0.99768 1.22796 0.97039 0.98248 0.87810 1.67699 1.10023 1.10060 1.31477 1.22610 0.92438 0.91788 0.97295 1.17692 0.92763 0.88910 1.16676 1.20699 0.98420 0.90642 0.96759 1.20082 0.91202 0.98118 1.12319 1.19335 0.91279 0.85702 0.91748 1.83525 1.22017 1.27025 1.78236 1.20863 0.77082 0.97206 1.51412 0.87196 1.24529 0.94848 0.99330 0.95301 1.69646 1.04550 1.30429 1.45899 0.86158 0.79931 0.81398 0.79309 1.19710 1.20611 1.18231 1.21257 1.01415 0.91512 1.10742 1.21060 0.92765 0.97652 0.92809 0.89748 0.89250 0.91854 0.78202 0.87464 0.87281 0.84920 0.84647 0.82722 0.82955 0.86179 0.85996 0.90757 0.84525 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.04 36.01 0.33 -1.01 16 2 C 0.17 2.33 7.10 -79.73 -0.57 1.76 16 3 N -0.26 -4.07 10.15 35.10 0.36 -3.71 16 4 N -0.59 -6.75 6.11 31.22 0.19 -6.56 16 5 C 0.53 6.38 7.94 -10.98 -0.09 6.29 16 6 O -0.50 -8.76 16.37 5.53 0.09 -8.67 16 7 C -0.09 -0.63 5.86 -29.03 -0.17 -0.80 16 8 C -0.12 -1.10 4.39 -104.48 -0.46 -1.56 16 9 C -0.06 -0.51 9.86 -39.28 -0.39 -0.90 16 10 C -0.17 -1.39 10.11 -39.44 -0.40 -1.79 16 11 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 12 N -0.48 -5.52 10.36 -13.25 -0.14 -5.65 16 13 C 0.12 1.19 10.86 -17.55 -0.19 1.00 16 14 C -0.16 -2.57 5.87 -105.01 -0.62 -3.19 16 15 C -0.04 -0.68 9.35 -39.18 -0.37 -1.05 16 16 C -0.20 -3.58 9.97 -39.46 -0.39 -3.97 16 17 C 0.17 3.84 6.65 -38.96 -0.26 3.58 16 18 O -0.21 -5.18 8.58 0.42 0.00 -5.18 16 19 C -0.39 -10.68 9.94 30.88 0.31 -10.37 16 20 H 0.11 3.10 5.42 -52.48 -0.28 2.81 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 22 N -0.87 -24.53 13.96 55.48 0.77 -23.75 16 23 Si 0.91 20.88 28.62 -169.99 -4.86 16.01 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.23 -4.93 9.15 -39.46 -0.36 -5.29 16 28 C -0.02 -0.43 9.57 -39.18 -0.37 -0.81 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.68 6.46 -51.92 -0.34 0.34 16 31 H 0.06 0.41 6.35 -51.93 -0.33 0.08 16 32 H 0.38 2.78 6.43 -182.60 -1.17 1.61 16 33 H 0.11 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.11 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.34 6.34 -52.49 -0.33 1.00 16 40 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.14 3.10 5.62 -52.48 -0.29 2.81 16 43 H 0.12 2.37 7.55 -52.48 -0.40 1.98 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -35.21 374.91 -7.89 -43.09 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.66 Total: 4.49 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -4.29 Total: -15.72 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 1.18 Total: -39.68 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.86 Total: 16.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.21 -7.89 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728784842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.481 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds