Wall clock time and date at job start Sat Apr 11 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.39589 * 120.00361 * 179.97438 * 2 1 3 13 13 C 1.39049 * 119.92080 * 179.72683 * 12 2 1 14 14 C 1.37788 * 120.07724 * 179.76352 * 13 12 2 15 15 C 1.39724 * 119.92061 * 0.51177 * 14 13 12 16 16 C 1.47462 * 120.08254 * 179.71919 * 15 14 13 17 17 N 1.29756 * 119.99774 * 0.02562 * 16 15 14 18 18 N 1.40107 * 119.99700 * 180.02562 * 17 16 15 19 19 C 1.46493 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47269 * 179.97438 * 19 18 17 21 21 S 1.81405 * 109.47364 * 179.97438 * 20 19 18 22 22 C 1.81399 * 101.91979 * 179.97438 * 21 20 19 23 23 O 1.42096 * 108.57675 * 294.48411 * 21 20 19 24 24 O 1.42092 * 108.57606 * 65.51356 * 21 20 19 25 25 C 1.39728 * 119.83960 * 359.73979 * 15 14 13 26 26 C 1.37783 * 119.91714 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07995 * 119.96060 * 359.97438 * 13 12 2 34 34 H 1.08006 * 120.03527 * 180.24823 * 14 13 12 35 35 H 1.08002 * 120.00345 * 180.02562 * 16 15 14 36 36 H 0.97001 * 119.99817 * 359.97438 * 18 17 16 37 37 H 1.08998 * 109.47275 * 299.99360 * 19 18 17 38 38 H 1.09005 * 109.47757 * 59.99540 * 19 18 17 39 39 H 1.08998 * 109.47202 * 299.99745 * 20 19 18 40 40 H 1.09004 * 109.47217 * 59.99652 * 20 19 18 41 41 H 1.09003 * 109.47005 * 60.00143 * 22 21 20 42 42 H 1.08998 * 109.46937 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47521 * 300.00279 * 22 21 20 44 44 H 1.08004 * 120.04600 * 179.97438 * 25 15 14 45 45 H 1.08003 * 119.96213 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1630 -1.2088 0.0005 13 6 3.5535 -1.2068 -0.0052 14 6 4.2458 -2.3982 0.0002 15 6 3.5489 -3.6092 0.0007 16 6 4.2862 -4.8863 0.0003 17 7 5.5838 -4.8862 -0.0001 18 7 6.2843 -6.0996 -0.0010 19 6 7.7492 -6.0996 -0.0020 20 6 8.2593 -7.5420 -0.0023 21 16 10.0733 -7.5420 -0.0042 22 6 10.4480 -9.3168 -0.0035 23 8 10.5247 -6.9840 -1.2306 24 8 10.5273 -6.9835 1.2210 25 6 2.1516 -3.6073 0.0012 26 6 1.4661 -2.4121 0.0006 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0915 -0.2704 -0.0105 34 1 5.3259 -2.3958 -0.0002 35 1 3.7462 -5.8216 0.0002 36 1 5.7992 -6.9396 -0.0011 37 1 8.1120 -5.5854 -0.8920 38 1 8.1132 -5.5860 0.8879 39 1 7.8966 -8.0558 0.8880 40 1 7.8953 -8.0559 -0.8920 41 1 10.0194 -9.7790 -0.8928 42 1 11.5285 -9.4600 -0.0041 43 1 10.0212 -9.7780 0.8872 44 1 1.6096 -4.5415 0.0011 45 1 0.3861 -2.4098 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733204739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:41 Heat of formation + Delta-G solvation = 13.780388 kcal Electronic energy + Delta-G solvation = -25402.440870 eV Core-core repulsion = 21548.881518 eV Total energy + Delta-G solvation = -3853.559352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.95815 -37.46392 -37.19822 -36.50518 -35.73493 -33.92955 -32.66449 -30.52383 -30.49379 -30.03842 -28.09980 -27.70281 -25.22263 -23.59673 -22.84112 -21.85928 -20.99523 -19.56310 -19.27150 -17.37866 -17.05383 -16.74610 -16.59643 -16.48873 -16.14996 -15.59164 -15.27598 -14.89954 -14.41295 -14.18485 -13.86106 -13.78771 -13.71931 -13.59818 -13.10283 -12.94713 -12.87343 -12.66105 -12.54929 -12.45786 -12.24230 -12.12416 -11.63657 -11.52154 -11.39767 -11.29964 -11.25560 -11.14187 -10.86873 -10.70043 -10.29848 -10.02991 -9.86474 -9.70725 -9.09620 -8.49907 -8.32236 -7.90136 -6.39412 -6.00021 -4.16757 -0.60968 1.59514 2.12617 2.18566 2.78021 3.05085 3.24746 3.27943 3.35198 3.39858 3.45800 3.99006 4.09770 4.10471 4.21583 4.41918 4.45870 4.62273 4.78896 5.05816 5.06558 5.22300 5.23548 5.29707 5.40183 5.53458 5.66721 5.74782 6.00034 6.07488 6.14424 6.26534 6.37733 6.44703 6.62041 6.93780 6.96927 7.06561 7.17678 7.24550 7.35000 7.54434 7.81398 8.14296 8.22208 8.42532 8.53899 8.91501 9.50099 10.96393 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.001889 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.412120 B =14820.973553 C =16365.239877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.610 5.610 3 C 0.246 3.754 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.253 3.747 13 C -0.193 4.193 14 C -0.035 4.035 15 C -0.140 4.140 16 C 0.101 3.899 17 N -0.250 5.250 18 N -0.671 5.671 19 C 0.176 3.824 20 C -0.632 4.632 21 S 2.434 3.566 22 C -0.655 4.655 23 O -0.932 6.932 24 O -0.932 6.932 25 C -0.047 4.047 26 C -0.226 4.226 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.372 0.628 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.771 -27.166 3.223 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.314 5.314 3 C 0.127 3.873 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.143 3.857 13 C -0.216 4.216 14 C -0.056 4.056 15 C -0.145 4.145 16 C -0.109 4.109 17 N -0.056 5.056 18 N -0.410 5.410 19 C 0.050 3.950 20 C -0.761 4.761 21 S 2.613 3.387 22 C -0.805 4.805 23 O -0.929 6.929 24 O -0.929 6.929 25 C -0.068 4.068 26 C -0.249 4.249 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.210 0.790 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.131 0.869 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.382 -25.481 3.271 26.729 hybrid contribution -1.266 -1.439 -1.058 2.190 sum 6.116 -26.920 2.213 27.695 Atomic orbital electron populations 1.21506 0.81335 1.01170 1.00622 1.47185 1.04576 1.04798 1.74833 1.19363 0.92214 0.78582 0.97166 1.21549 1.36502 1.06454 0.92569 0.92208 1.24960 0.95368 0.96301 0.97445 1.69921 1.38275 1.14340 1.30776 0.86513 0.77687 0.78709 0.84676 1.20671 1.21052 1.19765 1.18104 0.91576 0.85982 0.90026 1.20885 0.92518 0.99017 1.09139 1.21010 0.99448 0.90836 0.94296 1.17876 0.92154 0.90389 1.14083 1.23933 0.90124 0.96829 1.00060 1.74262 1.09587 1.08722 1.12990 1.47646 1.03314 1.02149 1.87902 1.20416 0.80851 0.90770 1.02987 1.30701 1.27171 1.06241 1.11971 1.07563 0.77462 0.78199 0.75460 1.30275 1.12647 1.25959 1.11582 1.93636 1.78373 1.75238 1.45608 1.93632 1.78306 1.75246 1.45711 1.20675 0.92441 0.96874 0.96846 1.20456 0.99119 0.91144 1.14159 0.93879 0.92638 0.91918 0.95072 0.94408 0.92609 0.84726 0.85990 0.88338 0.79046 0.90940 0.90955 0.84458 0.84458 0.85246 0.84970 0.85247 0.86936 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.23 59.85 0.61 2.26 16 2 N -0.61 -12.74 2.99 -180.93 -0.54 -13.28 16 3 C 0.25 6.10 4.94 -5.19 -0.03 6.08 16 4 C -0.53 -14.46 9.39 -34.44 -0.32 -14.79 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.25 4.99 6.56 -83.72 -0.55 4.44 16 13 C -0.19 -3.92 9.18 -39.45 -0.36 -4.28 16 14 C -0.03 -0.63 9.57 -39.19 -0.37 -1.00 16 15 C -0.14 -2.22 5.87 -105.03 -0.62 -2.84 16 16 C 0.10 1.39 10.75 -14.67 -0.16 1.23 16 17 N -0.25 -3.64 10.60 32.16 0.34 -3.30 16 18 N -0.67 -7.44 6.63 -10.62 -0.07 -7.51 16 19 C 0.18 1.65 6.68 -4.05 -0.03 1.62 16 20 C -0.63 -2.69 5.92 37.16 0.22 -2.47 16 21 S 2.43 13.07 5.36 -107.50 -0.58 12.49 16 22 C -0.65 -0.97 10.62 101.05 1.07 0.10 16 23 O -0.93 -9.07 18.10 -57.83 -1.05 -10.12 16 24 O -0.93 -8.96 18.10 -57.83 -1.05 -10.01 16 25 C -0.05 -0.69 9.78 -39.19 -0.38 -1.08 16 26 C -0.23 -3.73 9.19 -39.44 -0.36 -4.09 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.78 6.18 -51.93 -0.32 0.46 16 29 H 0.06 1.02 7.89 -51.93 -0.41 0.61 16 30 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 31 H 0.04 0.99 6.19 -51.93 -0.32 0.67 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.13 3.02 6.13 -52.49 -0.32 2.69 16 34 H 0.12 2.15 7.55 -52.48 -0.40 1.75 16 35 H 0.10 1.06 8.02 -52.49 -0.42 0.63 16 36 H 0.37 3.14 8.43 -182.59 -1.54 1.60 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.14 0.27 8.14 -51.92 -0.42 -0.15 16 41 H 0.13 -0.03 8.14 -51.92 -0.42 -0.45 16 42 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 43 H 0.13 -0.04 8.14 -51.92 -0.42 -0.46 16 44 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 45 H 0.12 1.69 6.12 -52.48 -0.32 1.37 16 LS Contribution 393.77 15.07 5.93 5.93 Total: -1.00 -37.09 393.77 -10.47 -47.57 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.81 Total: -0.11 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.37 Total: -13.20 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.47 Total: -48.98 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -2.09 Total: -20.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 13.07 SS G_CDS: -0.58 Total: 12.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.09 -10.47 -47.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733204739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.350 kcal (2) G-P(sol) polarization free energy of solvation -37.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds