Wall clock time and date at job start Sat Apr 11 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.39589 * 120.00361 * 179.97438 * 2 1 3 13 13 C 1.39049 * 119.92080 * 179.72683 * 12 2 1 14 14 C 1.37788 * 120.07724 * 179.76352 * 13 12 2 15 15 C 1.39724 * 119.92061 * 0.51177 * 14 13 12 16 16 C 1.47462 * 120.08254 * 179.71919 * 15 14 13 17 17 N 1.29756 * 119.99774 * 0.02562 * 16 15 14 18 18 N 1.40107 * 119.99700 * 180.02562 * 17 16 15 19 19 C 1.46493 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47269 * 179.97438 * 19 18 17 21 21 S 1.81405 * 109.47364 * 179.97438 * 20 19 18 22 22 C 1.81399 * 101.91979 * 179.97438 * 21 20 19 23 23 O 1.42096 * 108.57675 * 294.48411 * 21 20 19 24 24 O 1.42092 * 108.57606 * 65.51356 * 21 20 19 25 25 C 1.39728 * 119.83960 * 359.73979 * 15 14 13 26 26 C 1.37783 * 119.91714 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07995 * 119.96060 * 359.97438 * 13 12 2 34 34 H 1.08006 * 120.03527 * 180.24823 * 14 13 12 35 35 H 1.08002 * 120.00345 * 180.02562 * 16 15 14 36 36 H 0.97001 * 119.99817 * 359.97438 * 18 17 16 37 37 H 1.08998 * 109.47275 * 299.99360 * 19 18 17 38 38 H 1.09005 * 109.47757 * 59.99540 * 19 18 17 39 39 H 1.08998 * 109.47202 * 299.99745 * 20 19 18 40 40 H 1.09004 * 109.47217 * 59.99652 * 20 19 18 41 41 H 1.09003 * 109.47005 * 60.00143 * 22 21 20 42 42 H 1.08998 * 109.46937 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47521 * 300.00279 * 22 21 20 44 44 H 1.08004 * 120.04600 * 179.97438 * 25 15 14 45 45 H 1.08003 * 119.96213 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1630 -1.2088 0.0005 13 6 3.5535 -1.2068 -0.0052 14 6 4.2458 -2.3982 0.0002 15 6 3.5489 -3.6092 0.0007 16 6 4.2862 -4.8863 0.0003 17 7 5.5838 -4.8862 -0.0001 18 7 6.2843 -6.0996 -0.0010 19 6 7.7492 -6.0996 -0.0020 20 6 8.2593 -7.5420 -0.0023 21 16 10.0733 -7.5420 -0.0042 22 6 10.4480 -9.3168 -0.0035 23 8 10.5247 -6.9840 -1.2306 24 8 10.5273 -6.9835 1.2210 25 6 2.1516 -3.6073 0.0012 26 6 1.4661 -2.4121 0.0006 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0915 -0.2704 -0.0105 34 1 5.3259 -2.3958 -0.0002 35 1 3.7462 -5.8216 0.0002 36 1 5.7992 -6.9396 -0.0011 37 1 8.1120 -5.5854 -0.8920 38 1 8.1132 -5.5860 0.8879 39 1 7.8966 -8.0558 0.8880 40 1 7.8953 -8.0559 -0.8920 41 1 10.0194 -9.7790 -0.8928 42 1 11.5285 -9.4600 -0.0041 43 1 10.0212 -9.7780 0.8872 44 1 1.6096 -4.5415 0.0011 45 1 0.3861 -2.4098 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733204739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:41 Heat of formation + Delta-G solvation = -14.029149 kcal Electronic energy + Delta-G solvation = -25403.646782 eV Core-core repulsion = 21548.881518 eV Total energy + Delta-G solvation = -3854.765264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35446 -38.24980 -38.03382 -37.15378 -37.01098 -35.04225 -34.50730 -31.92383 -31.48227 -30.39444 -29.68925 -28.90617 -26.76918 -25.00546 -23.87934 -23.21933 -22.35155 -20.83863 -19.79404 -18.64698 -18.25976 -18.03482 -17.51010 -17.21423 -16.99493 -16.67992 -16.42038 -15.89740 -15.86096 -15.57747 -15.30673 -14.88147 -14.42619 -14.23217 -14.08175 -13.99462 -13.91697 -13.87916 -13.37802 -13.27174 -13.16722 -13.12105 -13.05002 -13.02316 -12.73075 -12.53783 -12.52006 -12.38221 -12.15559 -12.06645 -11.73813 -11.62254 -11.45563 -10.84893 -10.63985 -10.57636 -9.68819 -9.02749 -8.30241 -7.65059 -6.36792 -1.00011 0.35039 0.75105 1.35999 1.38183 1.48674 1.84558 1.85299 1.99120 2.34564 2.62942 2.78474 3.06568 3.10317 3.26099 3.48225 3.83328 4.02443 4.11043 4.13897 4.25721 4.27802 4.33965 4.43404 4.46694 4.61435 4.67226 4.72666 4.80006 4.85724 4.88886 5.01133 5.01476 5.08414 5.17981 5.28402 5.38523 5.59330 5.70044 5.74125 5.90449 6.07385 6.15933 6.25217 6.49038 6.82709 6.92563 7.34695 7.62515 8.83421 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.001889 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.412120 B =14820.973553 C =16365.239877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.626 5.626 3 C 0.263 3.737 4 C -0.540 4.540 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.224 3.776 13 C -0.222 4.222 14 C -0.048 4.048 15 C -0.131 4.131 16 C 0.097 3.903 17 N -0.284 5.284 18 N -0.660 5.660 19 C 0.160 3.840 20 C -0.614 4.614 21 S 2.429 3.571 22 C -0.627 4.627 23 O -0.988 6.988 24 O -0.987 6.987 25 C -0.033 4.033 26 C -0.216 4.216 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.013 0.987 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.390 0.610 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.157 0.843 42 H 0.138 0.862 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.242 -32.096 2.531 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.333 5.333 3 C 0.141 3.859 4 C -0.579 4.579 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.117 3.883 13 C -0.245 4.245 14 C -0.069 4.069 15 C -0.136 4.136 16 C -0.114 4.114 17 N -0.090 5.090 18 N -0.402 5.402 19 C 0.034 3.966 20 C -0.743 4.743 21 S 2.615 3.385 22 C -0.780 4.780 23 O -0.985 6.985 24 O -0.985 6.985 25 C -0.054 4.054 26 C -0.238 4.238 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.158 0.842 36 H 0.230 0.770 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.189 0.811 40 H 0.187 0.813 41 H 0.176 0.824 42 H 0.156 0.844 43 H 0.176 0.824 44 H 0.181 0.819 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.847 -30.413 2.582 31.077 hybrid contribution -0.693 -0.161 -0.796 1.067 sum 5.154 -30.574 1.786 31.057 Atomic orbital electron populations 1.21666 0.78958 1.02893 1.01085 1.47013 1.05912 1.03700 1.76636 1.18836 0.91231 0.80358 0.95453 1.21776 1.36316 1.06413 0.93410 0.93168 1.25786 0.95158 0.96450 1.01459 1.70030 1.39028 1.14786 1.32765 0.85511 0.77920 0.78225 0.79770 1.19365 1.20592 1.19793 1.18367 0.91344 0.86845 0.91778 1.20696 0.93454 0.98274 1.12041 1.21002 0.99200 0.91433 0.95237 1.18212 0.93213 0.90421 1.11785 1.23953 0.90031 0.97042 1.00360 1.74160 1.10801 1.11604 1.12478 1.47611 1.03705 1.01760 1.87111 1.20560 0.80219 0.94271 1.01570 1.30536 1.25287 1.03240 1.15256 1.07283 0.77682 0.80312 0.73227 1.30029 1.13559 1.19972 1.14485 1.93566 1.79683 1.78118 1.47174 1.93564 1.79592 1.78098 1.47203 1.21159 0.91834 0.98168 0.94239 1.20794 1.00497 0.90138 1.12408 0.93923 0.89134 0.92010 0.96909 0.97171 0.92432 0.88790 0.86926 0.84232 0.77011 0.92684 0.92524 0.81148 0.81255 0.82423 0.84385 0.82361 0.81878 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.20 10.23 127.77 1.31 4.51 16 2 N -0.63 -27.03 2.99 -726.34 -2.17 -29.20 16 3 C 0.26 13.92 4.94 85.63 0.42 14.34 16 4 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.61 5.46 84.65 0.46 1.07 16 7 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 8 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.22 9.01 6.56 38.30 0.25 9.26 16 13 C -0.22 -9.65 9.18 22.36 0.21 -9.45 16 14 C -0.05 -1.79 9.57 22.52 0.22 -1.58 16 15 C -0.13 -3.94 5.87 -20.13 -0.12 -4.06 16 16 C 0.10 2.37 10.75 87.43 0.94 3.31 16 17 N -0.28 -7.91 10.60 -52.18 -0.55 -8.46 16 18 N -0.66 -13.20 6.63 -187.50 -1.24 -14.45 16 19 C 0.16 2.90 6.68 86.38 0.58 3.48 16 20 C -0.61 -3.53 5.92 71.98 0.43 -3.11 16 21 S 2.43 24.13 5.36 -56.49 -0.30 23.83 16 22 C -0.63 0.65 10.62 113.37 1.20 1.85 16 23 O -0.99 -19.96 18.10 -127.37 -2.31 -22.26 16 24 O -0.99 -19.68 18.10 -127.37 -2.30 -21.98 16 25 C -0.03 -0.85 9.78 22.52 0.22 -0.63 16 26 C -0.22 -6.59 9.19 22.36 0.21 -6.38 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 2.31 6.18 -2.39 -0.01 2.30 16 29 H 0.06 2.01 7.89 -2.39 -0.02 1.99 16 30 H 0.01 0.71 7.89 -2.38 -0.02 0.69 16 31 H 0.01 0.59 6.19 -2.39 -0.01 0.58 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.09 4.75 6.13 -2.91 -0.02 4.73 16 34 H 0.11 4.30 7.55 -2.91 -0.02 4.28 16 35 H 0.14 2.23 8.02 -2.91 -0.02 2.20 16 36 H 0.39 5.04 8.43 -213.31 -1.80 3.25 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.17 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.16 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.16 -0.94 8.14 -2.39 -0.02 -0.96 16 44 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.15 3.58 6.12 -2.91 -0.02 3.56 16 Total: -1.00 -88.35 393.77 -0.81 -89.16 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -0.80 Total: 9.24 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 6.56 Total: -17.94 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -3.68 Total: -107.20 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -4.61 Total: -44.24 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 24.13 SS G_CDS: -0.30 Total: 23.83 kcal Total: -88.35 -0.81 -89.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733204739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.130 kcal (2) G-P(sol) polarization free energy of solvation -88.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds