Wall clock time and date at job start Sat Apr 11 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.03595 * 2 1 4 4 C 1.35318 * 107.74241 * 180.14662 * 3 2 1 5 5 C 1.50703 * 126.03941 * 179.87057 * 4 3 2 6 6 C 1.53000 * 109.47356 * 269.72110 * 5 4 3 7 7 O 1.45204 * 109.47088 * 180.02562 * 6 5 4 8 8 C 1.34865 * 116.99909 * 175.28263 * 7 6 5 9 9 O 1.21589 * 119.99962 * 4.18199 * 8 7 6 10 10 C 1.46715 * 119.99690 * 184.18804 * 8 7 6 11 11 C 1.36213 * 125.44428 * 185.29691 * 10 8 7 12 12 C 1.41659 * 107.74150 * 180.02562 * 11 10 8 13 13 C 1.40041 * 133.33740 * 179.97438 * 12 11 10 14 14 C 1.36563 * 119.83291 * 180.02562 * 13 12 11 15 15 C 1.38864 * 120.60036 * 359.97438 * 14 13 12 16 16 C 1.37843 * 120.63817 * 0.27555 * 15 14 13 17 17 C 1.39089 * 119.81206 * 359.50130 * 16 15 14 18 18 N 1.37831 * 133.15275 * 180.15263 * 17 16 15 19 19 C 1.36872 * 125.61921 * 0.29139 * 18 17 16 20 20 H 1.07998 * 120.00024 * 218.38398 * 19 18 17 21 21 C 1.39027 * 119.99959 * 38.37785 * 19 18 17 22 22 N 1.31344 * 120.00023 * 17.62777 * 21 19 18 23 23 Si 1.86802 * 119.99900 * 197.62373 * 21 19 18 24 24 H 1.48492 * 109.46980 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46971 * 120.00514 * 23 21 19 26 26 H 1.48504 * 109.46950 * 240.00344 * 23 21 19 27 27 C 1.39868 * 107.92255 * 359.61206 * 4 3 2 28 28 N 1.30838 * 108.20080 * 0.24204 * 27 4 3 29 29 H 1.08997 * 109.47175 * 270.26331 * 1 2 3 30 30 H 1.09000 * 109.46955 * 30.25821 * 1 2 3 31 31 H 1.08998 * 109.47055 * 150.26074 * 1 2 3 32 32 H 1.07998 * 126.13000 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47357 * 149.71339 * 5 4 3 34 34 H 1.09002 * 109.46945 * 29.71991 * 5 4 3 35 35 H 1.08991 * 109.47324 * 59.99603 * 6 5 4 36 36 H 1.08999 * 109.46715 * 299.99412 * 6 5 4 37 37 H 1.07997 * 126.13150 * 0.02562 * 11 10 8 38 38 H 1.08002 * 120.08871 * 0.02562 * 13 12 11 39 39 H 1.07996 * 119.70166 * 180.02562 * 14 13 12 40 40 H 1.08004 * 119.68583 * 180.02562 * 15 14 13 41 41 H 1.08004 * 120.09661 * 179.70531 * 16 15 14 42 42 H 0.96999 * 120.00260 * 184.93955 * 22 21 19 43 43 H 1.08001 * 125.89968 * 180.26247 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0073 6 6 5.1825 1.8360 -1.4511 7 8 6.3625 2.6821 -1.4548 8 6 6.9176 2.9533 -2.6536 9 8 6.3857 2.5584 -3.6732 10 6 8.1635 3.7246 -2.7274 11 6 8.7637 4.1479 -3.8746 12 6 9.9374 4.8537 -3.5126 13 6 10.9351 5.5022 -4.2509 14 6 11.9724 6.1103 -3.6036 15 6 12.0481 6.0928 -2.2171 16 6 11.0809 5.4566 -1.4688 17 6 10.0123 4.8342 -2.1054 18 7 8.9161 4.1377 -1.6439 19 6 8.6214 3.8949 -0.3295 20 1 8.2053 2.9424 -0.0364 21 6 8.8579 4.8744 0.6283 22 7 9.0279 6.1241 0.2615 23 14 8.9339 4.4133 2.4369 24 1 8.7125 2.9524 2.5849 25 1 10.2682 4.7691 2.9828 26 1 7.8818 5.1517 3.1806 27 6 3.5346 -0.7321 0.0036 28 7 2.2891 -1.1328 0.0056 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5098 32 1 1.9281 2.1193 -0.0004 33 1 5.5821 1.0365 0.5091 34 1 4.5442 2.4825 0.5023 35 1 4.3685 2.3447 -1.9673 36 1 5.4063 0.8987 -1.9605 37 1 8.4085 3.9762 -4.8799 38 1 10.8844 5.5214 -5.3296 39 1 12.7405 6.6101 -4.1750 40 1 12.8748 6.5788 -1.7204 41 1 11.1510 5.4443 -0.3911 42 1 9.2637 6.7954 0.9209 43 1 4.4054 -1.3711 0.0071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734286378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:45 Heat of formation + Delta-G solvation = 51.686390 kcal Electronic energy + Delta-G solvation = -28170.780912 eV Core-core repulsion = 24183.421336 eV Total energy + Delta-G solvation = -3987.359576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.33322 -40.49039 -39.21505 -36.09904 -35.86196 -34.04078 -33.62049 -32.31059 -30.71595 -29.30456 -28.93592 -28.13856 -26.59061 -24.93397 -24.00450 -22.47321 -21.24339 -21.02224 -20.38328 -20.19183 -19.21807 -18.00960 -17.15955 -16.77293 -16.02268 -15.87308 -15.55657 -15.35262 -14.82641 -14.67530 -14.59738 -14.00868 -13.66834 -13.52520 -13.23590 -13.08486 -12.96197 -12.85096 -12.83043 -12.52432 -12.36242 -11.96171 -11.78341 -11.51648 -11.43598 -11.28733 -11.11742 -10.77324 -10.69671 -10.57538 -10.27266 -9.99491 -9.95324 -9.81820 -9.57007 -9.15890 -8.67213 -8.51888 -7.23071 -6.91880 -6.57433 -4.47887 1.67497 1.72175 2.34481 2.61141 2.74538 2.93409 2.99623 3.02528 3.07905 3.38459 3.77902 4.10704 4.32158 4.53274 4.68586 4.70114 4.84203 4.95133 5.06999 5.09432 5.14069 5.30682 5.36171 5.56216 5.60102 5.71786 5.80240 5.89096 5.95242 6.11284 6.21121 6.25245 6.39617 6.52228 6.53401 6.64729 6.82862 6.85332 6.99472 7.03635 7.08005 7.13864 7.48113 7.53580 7.57052 7.65051 7.89644 8.00913 8.35522 8.48827 8.80786 9.26612 10.17375 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002965 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.472131 B = 9439.995439 C =10956.780042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.061 3.939 4 C -0.231 4.231 5 C -0.039 4.039 6 C 0.071 3.929 7 O -0.334 6.334 8 C 0.546 3.454 9 O -0.529 6.529 10 C -0.020 4.020 11 C -0.162 4.162 12 C -0.132 4.132 13 C -0.085 4.085 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.051 4.051 17 C 0.092 3.908 18 N -0.237 5.237 19 C -0.339 4.339 20 H 0.118 0.882 21 C 0.054 3.946 22 N -0.817 5.817 23 Si 0.926 3.074 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.274 1.274 27 C 0.057 3.943 28 N -0.301 5.301 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.281 0.719 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -5.736 2.361 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.085 4.085 4 C -0.242 4.242 5 C -0.078 4.078 6 C -0.004 4.004 7 O -0.250 6.250 8 C 0.394 3.606 9 O -0.419 6.419 10 C -0.133 4.133 11 C -0.190 4.190 12 C -0.136 4.136 13 C -0.104 4.104 14 C -0.177 4.177 15 C -0.169 4.169 16 C -0.071 4.071 17 C -0.024 4.024 18 N 0.101 4.899 19 C -0.467 4.467 20 H 0.136 0.864 21 C -0.159 4.159 22 N -0.446 5.446 23 Si 0.750 3.250 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.129 4.129 28 N -0.122 5.122 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.192 0.808 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.092 0.908 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.499 -6.746 2.556 12.739 hybrid contribution 0.267 0.767 0.803 1.142 sum -10.232 -5.979 3.359 12.318 Atomic orbital electron populations 1.21836 0.74294 1.04481 1.03263 1.48450 1.06606 1.03922 1.57244 1.22405 0.90882 0.93453 1.01795 1.19911 0.94115 0.93902 1.16290 1.19738 0.93953 0.98916 0.95161 1.22948 0.86043 0.93805 0.97574 1.86837 1.41826 1.63477 1.32815 1.20043 0.83005 0.76501 0.81067 1.90785 1.62963 1.52095 1.36098 1.19068 0.94026 1.11316 0.88923 1.20296 0.97236 1.05463 0.95977 1.17934 0.97728 1.05134 0.92803 1.20048 0.93861 0.98623 0.97879 1.20276 0.99170 1.03824 0.94385 1.20575 0.99534 1.03055 0.93755 1.20108 0.91727 0.96190 0.99047 1.18131 0.90371 1.02253 0.91662 1.40131 1.12301 1.33086 1.04379 1.20022 1.45327 1.01709 0.79626 0.86442 1.25633 0.94882 0.93814 1.01598 1.70024 1.36999 1.00460 1.37109 0.85879 0.78620 0.79897 0.80636 1.18267 1.19747 1.19964 1.23874 0.95201 0.94623 0.99218 1.77343 1.01733 1.08278 1.24864 0.90847 0.89465 0.89360 0.80759 0.89811 0.90038 0.91932 0.91712 0.84906 0.87696 0.87860 0.87626 0.86800 0.90777 0.79846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.47 59.85 0.69 1.33 16 2 N -0.38 -4.11 4.01 -68.16 -0.27 -4.38 16 3 C 0.06 0.65 11.40 -17.22 -0.20 0.45 16 4 C -0.23 -2.81 5.35 -105.05 -0.56 -3.37 16 5 C -0.04 -0.51 6.08 -27.88 -0.17 -0.68 16 6 C 0.07 1.13 5.49 37.16 0.20 1.34 16 7 O -0.33 -6.84 8.03 -40.95 -0.33 -7.17 16 8 C 0.55 12.43 7.90 34.15 0.27 12.70 16 9 O -0.53 -12.25 16.62 -19.33 -0.32 -12.57 16 10 C -0.02 -0.49 6.76 -82.28 -0.56 -1.05 16 11 C -0.16 -3.78 10.55 -39.01 -0.41 -4.19 16 12 C -0.13 -3.09 6.16 -106.90 -0.66 -3.75 16 13 C -0.09 -1.73 10.06 -39.51 -0.40 -2.13 16 14 C -0.16 -3.00 9.97 -39.95 -0.40 -3.40 16 15 C -0.15 -2.99 10.02 -39.49 -0.40 -3.38 16 16 C -0.05 -1.19 8.55 -39.41 -0.34 -1.52 16 17 C 0.09 2.30 6.08 -83.83 -0.51 1.79 16 18 N -0.24 -6.07 2.83 -56.10 -0.16 -6.23 16 19 C -0.34 -8.42 8.73 -15.01 -0.13 -8.55 16 20 H 0.12 2.82 6.88 -52.49 -0.36 2.46 16 21 C 0.05 1.28 4.44 -17.47 -0.08 1.20 16 22 N -0.82 -20.50 10.89 55.50 0.60 -19.89 16 23 Si 0.93 18.07 29.59 -169.99 -5.03 13.04 16 24 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 C 0.06 0.70 11.96 -17.37 -0.21 0.49 16 28 N -0.30 -3.93 12.58 30.62 0.39 -3.55 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 37 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 38 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.11 2.68 6.44 -52.48 -0.34 2.34 16 42 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -31.39 373.75 -8.67 -40.06 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.33 Total: 7.78 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -3.85 Total: -12.72 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.56 Total: -34.05 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.65 Total: -19.74 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.39 -8.67 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734286378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.742 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds