Wall clock time and date at job start Sat Apr 11 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.03595 * 2 1 4 4 C 1.35318 * 107.74241 * 180.14662 * 3 2 1 5 5 C 1.50703 * 126.03941 * 179.87057 * 4 3 2 6 6 C 1.53000 * 109.47356 * 269.72110 * 5 4 3 7 7 O 1.45204 * 109.47088 * 180.02562 * 6 5 4 8 8 C 1.34865 * 116.99909 * 175.28263 * 7 6 5 9 9 O 1.21589 * 119.99962 * 4.18199 * 8 7 6 10 10 C 1.46715 * 119.99690 * 184.18804 * 8 7 6 11 11 C 1.36213 * 125.44428 * 185.29691 * 10 8 7 12 12 C 1.41659 * 107.74150 * 180.02562 * 11 10 8 13 13 C 1.40041 * 133.33740 * 179.97438 * 12 11 10 14 14 C 1.36563 * 119.83291 * 180.02562 * 13 12 11 15 15 C 1.38864 * 120.60036 * 359.97438 * 14 13 12 16 16 C 1.37843 * 120.63817 * 0.27555 * 15 14 13 17 17 C 1.39089 * 119.81206 * 359.50130 * 16 15 14 18 18 N 1.37831 * 133.15275 * 180.15263 * 17 16 15 19 19 C 1.36872 * 125.61921 * 0.29139 * 18 17 16 20 20 H 1.07998 * 120.00024 * 218.38398 * 19 18 17 21 21 C 1.39027 * 119.99959 * 38.37785 * 19 18 17 22 22 N 1.31344 * 120.00023 * 17.62777 * 21 19 18 23 23 Si 1.86802 * 119.99900 * 197.62373 * 21 19 18 24 24 H 1.48492 * 109.46980 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46971 * 120.00514 * 23 21 19 26 26 H 1.48504 * 109.46950 * 240.00344 * 23 21 19 27 27 C 1.39868 * 107.92255 * 359.61206 * 4 3 2 28 28 N 1.30838 * 108.20080 * 0.24204 * 27 4 3 29 29 H 1.08997 * 109.47175 * 270.26331 * 1 2 3 30 30 H 1.09000 * 109.46955 * 30.25821 * 1 2 3 31 31 H 1.08998 * 109.47055 * 150.26074 * 1 2 3 32 32 H 1.07998 * 126.13000 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47357 * 149.71339 * 5 4 3 34 34 H 1.09002 * 109.46945 * 29.71991 * 5 4 3 35 35 H 1.08991 * 109.47324 * 59.99603 * 6 5 4 36 36 H 1.08999 * 109.46715 * 299.99412 * 6 5 4 37 37 H 1.07997 * 126.13150 * 0.02562 * 11 10 8 38 38 H 1.08002 * 120.08871 * 0.02562 * 13 12 11 39 39 H 1.07996 * 119.70166 * 180.02562 * 14 13 12 40 40 H 1.08004 * 119.68583 * 180.02562 * 15 14 13 41 41 H 1.08004 * 120.09661 * 179.70531 * 16 15 14 42 42 H 0.96999 * 120.00260 * 184.93955 * 22 21 19 43 43 H 1.08001 * 125.89968 * 180.26247 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0073 6 6 5.1825 1.8360 -1.4511 7 8 6.3625 2.6821 -1.4548 8 6 6.9176 2.9533 -2.6536 9 8 6.3857 2.5584 -3.6732 10 6 8.1635 3.7246 -2.7274 11 6 8.7637 4.1479 -3.8746 12 6 9.9374 4.8537 -3.5126 13 6 10.9351 5.5022 -4.2509 14 6 11.9724 6.1103 -3.6036 15 6 12.0481 6.0928 -2.2171 16 6 11.0809 5.4566 -1.4688 17 6 10.0123 4.8342 -2.1054 18 7 8.9161 4.1377 -1.6439 19 6 8.6214 3.8949 -0.3295 20 1 8.2053 2.9424 -0.0364 21 6 8.8579 4.8744 0.6283 22 7 9.0279 6.1241 0.2615 23 14 8.9339 4.4133 2.4369 24 1 8.7125 2.9524 2.5849 25 1 10.2682 4.7691 2.9828 26 1 7.8818 5.1517 3.1806 27 6 3.5346 -0.7321 0.0036 28 7 2.2891 -1.1328 0.0056 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5098 32 1 1.9281 2.1193 -0.0004 33 1 5.5821 1.0365 0.5091 34 1 4.5442 2.4825 0.5023 35 1 4.3685 2.3447 -1.9673 36 1 5.4063 0.8987 -1.9605 37 1 8.4085 3.9762 -4.8799 38 1 10.8844 5.5214 -5.3296 39 1 12.7405 6.6101 -4.1750 40 1 12.8748 6.5788 -1.7204 41 1 11.1510 5.4443 -0.3911 42 1 9.2637 6.7954 0.9209 43 1 4.4054 -1.3711 0.0071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734286378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:44 Heat of formation + Delta-G solvation = 36.544799 kcal Electronic energy + Delta-G solvation = -28171.437500 eV Core-core repulsion = 24183.421336 eV Total energy + Delta-G solvation = -3988.016165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26296 -42.15943 -40.88834 -37.70528 -37.53107 -35.40382 -34.97798 -33.26245 -32.47358 -30.80996 -30.23914 -29.61924 -27.46389 -26.73789 -25.46412 -23.78382 -22.73404 -22.06709 -22.03606 -21.21258 -20.88306 -19.73145 -18.76723 -17.74227 -17.58350 -17.40739 -17.09152 -16.44450 -16.34925 -16.30751 -15.57593 -15.32114 -15.14288 -14.83372 -14.69454 -14.59355 -14.31144 -14.12160 -13.85573 -13.63293 -13.55729 -13.46961 -13.22740 -13.00707 -12.86321 -12.69275 -12.58972 -12.33929 -12.12103 -11.95471 -11.77983 -11.62157 -11.47502 -11.37227 -10.91117 -10.42038 -10.41457 -9.41007 -8.97765 -8.68463 -8.31567 -6.33687 -0.05260 0.87588 1.10429 1.20279 1.41268 1.43724 1.53081 1.56431 1.67839 1.95494 2.15233 2.33207 2.80190 2.92057 3.36642 3.60326 3.89403 3.98666 4.05664 4.16465 4.22456 4.30912 4.32567 4.42455 4.44550 4.50633 4.54563 4.65221 4.67976 4.74072 4.82056 4.84134 4.95983 5.03407 5.19724 5.22920 5.24081 5.34972 5.40780 5.46107 5.63153 5.76702 5.91606 5.97221 6.08535 6.17949 6.32002 6.59577 6.66564 6.75721 7.02813 7.46930 8.41674 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002965 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.472131 B = 9439.995439 C =10956.780042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.380 5.380 3 C 0.069 3.931 4 C -0.252 4.252 5 C -0.025 4.025 6 C 0.069 3.931 7 O -0.342 6.342 8 C 0.547 3.453 9 O -0.541 6.541 10 C -0.051 4.051 11 C -0.166 4.166 12 C -0.154 4.154 13 C -0.088 4.088 14 C -0.151 4.151 15 C -0.134 4.134 16 C -0.084 4.084 17 C 0.065 3.935 18 N -0.256 5.256 19 C -0.363 4.363 20 H 0.115 0.885 21 C 0.020 3.980 22 N -0.851 5.851 23 Si 0.991 3.009 24 H -0.253 1.253 25 H -0.267 1.267 26 H -0.270 1.270 27 C 0.047 3.953 28 N -0.332 5.332 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.205 0.795 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.149 0.851 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.138 0.862 41 H 0.100 0.900 42 H 0.285 0.715 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 -4.996 2.484 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 C -0.079 4.079 4 C -0.264 4.264 5 C -0.064 4.064 6 C -0.005 4.005 7 O -0.258 6.258 8 C 0.395 3.605 9 O -0.433 6.433 10 C -0.163 4.163 11 C -0.194 4.194 12 C -0.158 4.158 13 C -0.106 4.106 14 C -0.170 4.170 15 C -0.154 4.154 16 C -0.104 4.104 17 C -0.051 4.051 18 N 0.081 4.919 19 C -0.491 4.491 20 H 0.132 0.868 21 C -0.189 4.189 22 N -0.481 5.481 23 Si 0.812 3.188 24 H -0.176 1.176 25 H -0.191 1.191 26 H -0.195 1.195 27 C -0.138 4.138 28 N -0.154 5.154 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.221 0.779 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.352 -6.028 2.679 12.275 hybrid contribution 0.208 0.584 0.659 0.905 sum -10.144 -5.445 3.338 11.987 Atomic orbital electron populations 1.22213 0.71847 1.05956 1.04724 1.48836 1.08048 1.03322 1.56010 1.22870 0.90466 0.94680 0.99864 1.19862 0.94316 0.93760 1.18453 1.19595 0.94528 0.99271 0.92963 1.23273 0.84471 0.92956 0.99811 1.86817 1.43278 1.63975 1.31722 1.19932 0.82778 0.76256 0.81531 1.90751 1.63336 1.52740 1.36493 1.19525 0.95092 1.12271 0.89456 1.20589 0.97280 1.05101 0.96420 1.18356 0.98718 1.06033 0.92696 1.20482 0.93064 0.97556 0.99543 1.20767 0.99460 1.02637 0.94097 1.21047 0.98948 1.00849 0.94576 1.20203 0.92917 0.98474 0.98817 1.18645 0.90879 1.02713 0.92823 1.40326 1.12911 1.33979 1.04673 1.20239 1.46597 1.02080 0.80137 0.86768 1.26468 0.93825 0.93355 1.05281 1.70099 1.38008 1.01422 1.38553 0.84923 0.78751 0.79861 0.75311 1.17580 1.19128 1.19483 1.24155 0.95601 0.95046 0.98978 1.77287 1.02257 1.09792 1.26099 0.89371 0.86848 0.89096 0.77871 0.89942 0.89772 0.91588 0.91818 0.83356 0.84513 0.83393 0.84391 0.88169 0.90461 0.78701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.47 127.77 1.47 2.42 16 2 N -0.38 -7.67 4.01 -369.57 -1.48 -9.15 16 3 C 0.07 1.36 11.40 83.54 0.95 2.31 16 4 C -0.25 -6.00 5.35 -20.14 -0.11 -6.10 16 5 C -0.02 -0.66 6.08 29.85 0.18 -0.47 16 6 C 0.07 2.23 5.49 71.98 0.39 2.63 16 7 O -0.34 -14.50 8.03 -57.79 -0.46 -14.97 16 8 C 0.55 25.77 7.90 70.04 0.55 26.32 16 9 O -0.54 -25.66 16.62 19.54 0.32 -25.34 16 10 C -0.05 -2.57 6.76 39.88 0.27 -2.30 16 11 C -0.17 -7.88 10.55 22.64 0.24 -7.64 16 12 C -0.15 -7.22 6.16 -21.34 -0.13 -7.35 16 13 C -0.09 -3.36 10.06 22.32 0.22 -3.14 16 14 C -0.15 -5.22 9.97 22.03 0.22 -5.00 16 15 C -0.13 -5.09 10.02 22.33 0.22 -4.87 16 16 C -0.08 -3.93 8.55 22.38 0.19 -3.74 16 17 C 0.06 3.32 6.08 39.06 0.24 3.56 16 18 N -0.26 -13.60 2.83 -331.41 -0.94 -14.54 16 19 C -0.36 -18.70 8.73 84.10 0.73 -17.96 16 20 H 0.11 5.72 6.88 -2.91 -0.02 5.70 16 21 C 0.02 0.98 4.44 84.96 0.38 1.36 16 22 N -0.85 -43.68 10.89 21.67 0.24 -43.45 16 23 Si 0.99 37.34 29.59 68.60 2.03 39.37 16 24 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 25 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 27 C 0.05 1.16 11.96 85.24 1.02 2.18 16 28 N -0.33 -8.52 12.58 -57.02 -0.72 -9.24 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 37 H 0.15 6.31 8.06 -2.91 -0.02 6.29 16 38 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.10 4.84 6.44 -2.91 -0.02 4.82 16 42 H 0.29 13.45 8.31 -92.71 -0.77 12.68 16 43 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -70.01 373.75 7.07 -62.94 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 1.03 Total: 32.18 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 7.04 Total: -17.81 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -2.90 Total: -76.38 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.14 Total: -40.30 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -70.01 7.07 -62.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734286378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.483 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds