Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 111.00043 * 2 1 4 4 C 1.50700 * 109.47105 * 293.95473 * 3 2 1 5 5 C 1.41383 * 126.58257 * 89.99716 * 4 3 2 6 6 C 1.34515 * 106.83779 * 179.73656 * 5 4 3 7 7 O 1.34300 * 108.42548 * 0.26043 * 6 5 4 8 8 C 1.34305 * 109.47388 * 0.02562 * 7 6 5 9 9 C 1.46894 * 110.99833 * 123.95090 * 2 1 3 10 10 C 1.50697 * 109.47232 * 66.04834 * 9 2 1 11 11 N 1.29829 * 118.34577 * 359.73156 * 10 9 2 12 12 C 1.35638 * 121.62531 * 179.76383 * 11 10 9 13 13 C 1.39634 * 121.62736 * 180.27801 * 12 11 10 14 14 C 1.37705 * 119.69829 * 180.19873 * 13 12 11 15 15 C 1.38879 * 120.82290 * 359.97438 * 14 13 12 16 16 C 1.37789 * 120.57169 * 0.02562 * 15 14 13 17 17 C 1.39374 * 119.51956 * 359.97438 * 16 15 14 18 18 C 1.46957 * 121.90337 * 180.02562 * 17 16 15 19 19 O 1.21718 * 121.29467 * 359.97438 * 18 17 16 20 20 N 1.35344 * 117.42100 * 179.97438 * 18 17 16 21 21 C 1.37107 * 119.71352 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00013 * 138.86689 * 21 20 18 23 23 C 1.39073 * 120.00104 * 318.85936 * 21 20 18 24 24 N 1.31256 * 119.99936 * 340.42024 * 23 21 20 25 25 Si 1.86806 * 119.99936 * 160.41840 * 23 21 20 26 26 H 1.48493 * 109.46948 * 59.99904 * 25 23 21 27 27 H 1.48493 * 109.47089 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46928 * 300.00074 * 25 23 21 29 29 H 1.09005 * 109.46632 * 60.00146 * 1 2 3 30 30 H 1.08995 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47335 * 300.00405 * 1 2 3 32 32 H 1.08998 * 109.47163 * 173.95020 * 3 2 1 33 33 H 1.08999 * 109.47195 * 53.94978 * 3 2 1 34 34 H 1.08000 * 126.57968 * 0.02562 * 5 4 3 35 35 H 1.08008 * 125.78284 * 180.22835 * 6 5 4 36 36 H 1.08005 * 125.78875 * 179.97438 * 8 7 6 37 37 H 1.09004 * 109.47288 * 186.04828 * 9 2 1 38 38 H 1.09004 * 109.47511 * 306.04872 * 9 2 1 39 39 H 1.07999 * 120.14818 * 0.17269 * 13 12 11 40 40 H 1.07994 * 119.59081 * 179.97438 * 14 13 12 41 41 H 1.07999 * 119.71142 * 179.97438 * 15 14 13 42 42 H 1.08008 * 120.23937 * 180.02562 * 16 15 14 43 43 H 0.96999 * 119.99746 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 6 0.4679 2.7968 -1.5635 6 6 0.5571 3.2205 -2.8370 7 8 1.7090 2.7652 -3.3562 8 6 2.3659 2.0494 -2.4289 9 6 1.9954 -0.7659 1.1376 10 6 1.6369 -2.2203 0.9729 11 7 0.9553 -2.5724 -0.0745 12 6 0.6009 -3.8636 -0.2914 13 6 -0.1272 -4.2432 -1.4207 14 6 -0.4694 -5.5651 -1.5993 15 6 -0.0989 -6.5279 -0.6696 16 6 0.6198 -6.1783 0.4529 17 6 0.9763 -4.8459 0.6526 18 6 1.7426 -4.4151 1.8303 19 8 2.0961 -5.2112 2.6805 20 7 2.0401 -3.0987 1.9330 21 6 2.7536 -2.6455 3.0125 22 1 3.5284 -1.9056 2.8756 23 6 2.4796 -3.1383 4.2838 24 7 1.3292 -3.7214 4.5277 25 14 3.7488 -2.9705 5.6442 26 1 4.0427 -1.5330 5.8723 27 1 3.2176 -3.5721 6.8936 28 1 4.9952 -3.6738 5.2477 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.0797 1.3445 0.1083 33 1 1.5611 1.9274 0.8309 34 1 -0.3395 2.9953 -0.8742 35 1 -0.1739 3.8242 -3.3544 36 1 3.3202 1.5624 -2.5661 37 1 3.0797 -0.6610 1.1757 38 1 1.5610 -0.3872 2.0628 39 1 -0.4210 -3.5034 -2.1506 40 1 -1.0329 -5.8567 -2.4732 41 1 -0.3772 -7.5594 -0.8273 42 1 0.9056 -6.9316 1.1723 43 1 1.1383 -4.0654 5.4143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744389513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = 60.217852 kcal Electronic energy + Delta-G solvation = -29209.508730 eV Core-core repulsion = 25222.519106 eV Total energy + Delta-G solvation = -3986.989624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.47409 -40.47733 -37.76028 -37.36679 -35.83668 -33.76862 -33.04207 -31.89330 -30.37036 -30.05480 -29.18807 -27.25760 -26.63913 -25.78335 -23.43306 -22.81224 -21.52352 -21.28057 -20.65697 -19.98338 -18.74815 -17.83355 -17.36925 -16.82328 -15.97277 -15.68149 -15.15952 -14.99784 -14.82726 -14.77099 -14.36104 -14.16115 -13.92024 -13.74517 -13.51936 -13.02036 -12.93826 -12.77369 -12.37043 -12.16505 -12.12297 -11.93659 -11.84885 -11.38427 -11.24529 -11.21743 -11.13573 -10.92807 -10.90119 -10.63936 -10.47352 -9.66159 -9.54200 -8.91061 -8.70921 -8.48742 -8.34696 -8.33858 -7.87646 -7.02223 -6.68348 -4.52932 1.52748 1.69356 1.84020 2.62097 3.03116 3.12222 3.13769 3.20317 3.25789 3.75110 3.93534 4.14504 4.59652 4.70140 4.85449 4.89847 4.93781 5.14494 5.18199 5.38876 5.46474 5.50588 5.59546 5.64692 5.73935 5.76793 5.84798 5.89909 6.04982 6.08072 6.11429 6.15613 6.20899 6.23758 6.46050 6.54011 6.65286 6.76999 6.83463 7.04130 7.08618 7.16421 7.18240 7.37032 7.47987 7.53550 7.62182 8.13018 8.47355 8.72671 9.21002 9.52501 10.32664 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.004218 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.024866 B = 6636.889611 C = 9108.511752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.514 5.514 3 C 0.120 3.880 4 C -0.164 4.164 5 C -0.203 4.203 6 C -0.052 4.052 7 O -0.182 6.182 8 C -0.023 4.023 9 C 0.123 3.877 10 C 0.364 3.636 11 N -0.543 5.543 12 C 0.167 3.833 13 C -0.130 4.130 14 C -0.091 4.091 15 C -0.177 4.177 16 C -0.039 4.039 17 C -0.210 4.210 18 C 0.519 3.481 19 O -0.503 6.503 20 N -0.352 5.352 21 C -0.386 4.386 22 H 0.107 0.893 23 C 0.079 3.921 24 N -0.799 5.799 25 Si 0.929 3.071 26 H -0.269 1.269 27 H -0.280 1.280 28 H -0.266 1.266 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.009 0.991 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.143 0.857 35 H 0.197 0.803 36 H 0.201 0.799 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 9.686 -9.749 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.238 5.238 3 C -0.007 4.007 4 C -0.166 4.166 5 C -0.222 4.222 6 C -0.119 4.119 7 O -0.078 6.078 8 C -0.092 4.092 9 C -0.007 4.007 10 C 0.101 3.899 11 N -0.271 5.271 12 C 0.050 3.950 13 C -0.150 4.150 14 C -0.110 4.110 15 C -0.196 4.196 16 C -0.058 4.058 17 C -0.217 4.217 18 C 0.314 3.686 19 O -0.377 6.377 20 N -0.055 5.055 21 C -0.512 4.512 22 H 0.124 0.876 23 C -0.138 4.138 24 N -0.427 5.427 25 Si 0.753 3.247 26 H -0.194 1.194 27 H -0.205 1.205 28 H -0.191 1.191 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.028 0.972 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.161 0.839 35 H 0.214 0.786 36 H 0.218 0.782 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.464 9.327 -10.291 13.966 hybrid contribution 0.211 -0.364 2.224 2.264 sum -1.254 8.963 -8.067 12.124 Atomic orbital electron populations 1.22558 0.86637 1.04208 0.98824 1.61709 1.09037 1.10797 1.42288 1.20407 0.99967 0.88245 0.92111 1.20265 0.96104 1.02981 0.97251 1.21741 1.00105 1.03298 0.97101 1.23895 0.89171 1.04058 0.94795 1.84053 1.29265 1.54328 1.40120 1.23866 0.99576 0.98751 0.86967 1.20748 1.00564 0.87015 0.92328 1.22662 0.88779 0.92197 0.86275 1.68485 1.21401 1.15751 1.21459 1.18863 0.94206 0.88608 0.93277 1.20592 1.01340 0.95753 0.97333 1.20965 0.98768 0.92884 0.98426 1.20825 1.03698 0.99013 0.96068 1.20877 0.94210 0.94688 0.96065 1.20856 1.06870 0.95805 0.98215 1.18197 0.82424 0.81940 0.86042 1.90660 1.53276 1.52080 1.41658 1.42250 1.39349 1.06114 1.17792 1.19531 1.18093 1.29204 0.84398 0.87564 1.25395 0.95555 0.94043 0.98773 1.69801 1.20138 1.29323 1.23456 0.85994 0.80866 0.78760 0.79077 1.19364 1.20475 1.19102 0.92039 0.88591 0.97202 0.90144 0.94131 0.83910 0.78599 0.78209 0.88668 0.91493 0.85778 0.86583 0.86700 0.85982 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.88 60.07 0.53 0.94 16 2 N -0.51 -8.12 4.42 -245.83 -1.09 -9.20 16 3 C 0.12 1.54 5.48 -4.97 -0.03 1.52 16 4 C -0.16 -2.03 4.99 -104.74 -0.52 -2.55 16 5 C -0.20 -2.28 9.58 -39.70 -0.38 -2.66 16 6 C -0.05 -0.52 12.09 29.42 0.36 -0.17 16 7 O -0.18 -2.13 10.65 5.71 0.06 -2.07 16 8 C -0.02 -0.27 12.01 29.42 0.35 0.08 16 9 C 0.12 2.18 4.08 -4.98 -0.02 2.16 16 10 C 0.36 7.97 7.20 -154.88 -1.11 6.86 16 11 N -0.54 -11.65 7.07 -8.10 -0.06 -11.71 16 12 C 0.17 3.62 6.63 -84.49 -0.56 3.06 16 13 C -0.13 -2.38 10.03 -39.26 -0.39 -2.77 16 14 C -0.09 -1.46 10.00 -39.54 -0.40 -1.86 16 15 C -0.18 -3.03 10.02 -39.51 -0.40 -3.42 16 16 C -0.04 -0.81 9.68 -39.32 -0.38 -1.19 16 17 C -0.21 -4.96 5.89 -104.78 -0.62 -5.57 16 18 C 0.52 13.93 6.93 -12.47 -0.09 13.85 16 19 O -0.50 -14.77 14.27 5.17 0.07 -14.70 16 20 N -0.35 -8.83 2.68 -59.56 -0.16 -8.99 16 21 C -0.39 -9.60 8.24 -14.88 -0.12 -9.72 16 22 H 0.11 2.37 7.07 -52.48 -0.37 2.00 16 23 C 0.08 2.03 4.36 -17.49 -0.08 1.95 16 24 N -0.80 -22.00 11.54 55.50 0.64 -21.36 16 25 Si 0.93 19.53 29.60 -169.99 -5.03 14.50 16 26 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 28 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 29 H 0.06 0.91 6.34 -51.93 -0.33 0.59 16 30 H 0.10 1.78 5.59 -51.93 -0.29 1.49 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.04 0.51 8.12 -51.93 -0.42 0.08 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.20 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.20 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.10 1.55 7.37 -51.93 -0.38 1.17 16 38 H 0.07 1.21 8.02 -51.93 -0.42 0.80 16 39 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.12 2.52 7.83 -52.48 -0.41 2.11 16 43 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -31.63 360.71 -9.10 -40.73 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.13 Total: 6.87 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -3.85 Total: 0.50 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.66 Total: -51.27 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.13 Total: -16.77 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.63 -9.10 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744389513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.945 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds