Wall clock time and date at job start Sat Apr 11 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 111.00043 * 2 1 4 4 C 1.50700 * 109.47105 * 293.95473 * 3 2 1 5 5 C 1.41383 * 126.58257 * 89.99716 * 4 3 2 6 6 C 1.34515 * 106.83779 * 179.73656 * 5 4 3 7 7 O 1.34300 * 108.42548 * 0.26043 * 6 5 4 8 8 C 1.34305 * 109.47388 * 0.02562 * 7 6 5 9 9 C 1.46894 * 110.99833 * 123.95090 * 2 1 3 10 10 C 1.50697 * 109.47232 * 66.04834 * 9 2 1 11 11 N 1.29829 * 118.34577 * 359.73156 * 10 9 2 12 12 C 1.35638 * 121.62531 * 179.76383 * 11 10 9 13 13 C 1.39634 * 121.62736 * 180.27801 * 12 11 10 14 14 C 1.37705 * 119.69829 * 180.19873 * 13 12 11 15 15 C 1.38879 * 120.82290 * 359.97438 * 14 13 12 16 16 C 1.37789 * 120.57169 * 0.02562 * 15 14 13 17 17 C 1.39374 * 119.51956 * 359.97438 * 16 15 14 18 18 C 1.46957 * 121.90337 * 180.02562 * 17 16 15 19 19 O 1.21718 * 121.29467 * 359.97438 * 18 17 16 20 20 N 1.35344 * 117.42100 * 179.97438 * 18 17 16 21 21 C 1.37107 * 119.71352 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00013 * 138.86689 * 21 20 18 23 23 C 1.39073 * 120.00104 * 318.85936 * 21 20 18 24 24 N 1.31256 * 119.99936 * 340.42024 * 23 21 20 25 25 Si 1.86806 * 119.99936 * 160.41840 * 23 21 20 26 26 H 1.48493 * 109.46948 * 59.99904 * 25 23 21 27 27 H 1.48493 * 109.47089 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46928 * 300.00074 * 25 23 21 29 29 H 1.09005 * 109.46632 * 60.00146 * 1 2 3 30 30 H 1.08995 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47335 * 300.00405 * 1 2 3 32 32 H 1.08998 * 109.47163 * 173.95020 * 3 2 1 33 33 H 1.08999 * 109.47195 * 53.94978 * 3 2 1 34 34 H 1.08000 * 126.57968 * 0.02562 * 5 4 3 35 35 H 1.08008 * 125.78284 * 180.22835 * 6 5 4 36 36 H 1.08005 * 125.78875 * 179.97438 * 8 7 6 37 37 H 1.09004 * 109.47288 * 186.04828 * 9 2 1 38 38 H 1.09004 * 109.47511 * 306.04872 * 9 2 1 39 39 H 1.07999 * 120.14818 * 0.17269 * 13 12 11 40 40 H 1.07994 * 119.59081 * 179.97438 * 14 13 12 41 41 H 1.07999 * 119.71142 * 179.97438 * 15 14 13 42 42 H 1.08008 * 120.23937 * 180.02562 * 16 15 14 43 43 H 0.96999 * 119.99746 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 6 0.4679 2.7968 -1.5635 6 6 0.5571 3.2205 -2.8370 7 8 1.7090 2.7652 -3.3562 8 6 2.3659 2.0494 -2.4289 9 6 1.9954 -0.7659 1.1376 10 6 1.6369 -2.2203 0.9729 11 7 0.9553 -2.5724 -0.0745 12 6 0.6009 -3.8636 -0.2914 13 6 -0.1272 -4.2432 -1.4207 14 6 -0.4694 -5.5651 -1.5993 15 6 -0.0989 -6.5279 -0.6696 16 6 0.6198 -6.1783 0.4529 17 6 0.9763 -4.8459 0.6526 18 6 1.7426 -4.4151 1.8303 19 8 2.0961 -5.2112 2.6805 20 7 2.0401 -3.0987 1.9330 21 6 2.7536 -2.6455 3.0125 22 1 3.5284 -1.9056 2.8756 23 6 2.4796 -3.1383 4.2838 24 7 1.3292 -3.7214 4.5277 25 14 3.7488 -2.9705 5.6442 26 1 4.0427 -1.5330 5.8723 27 1 3.2176 -3.5721 6.8936 28 1 4.9952 -3.6738 5.2477 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.0797 1.3445 0.1083 33 1 1.5611 1.9274 0.8309 34 1 -0.3395 2.9953 -0.8742 35 1 -0.1739 3.8242 -3.3544 36 1 3.3202 1.5624 -2.5661 37 1 3.0797 -0.6610 1.1757 38 1 1.5610 -0.3872 2.0628 39 1 -0.4210 -3.5034 -2.1506 40 1 -1.0329 -5.8567 -2.4732 41 1 -0.3772 -7.5594 -0.8273 42 1 0.9056 -6.9316 1.1723 43 1 1.1383 -4.0654 5.4143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744389513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:49 Heat of formation + Delta-G solvation = 41.339791 kcal Electronic energy + Delta-G solvation = -29210.327344 eV Core-core repulsion = 25222.519106 eV Total energy + Delta-G solvation = -3987.808238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.31644 -42.20905 -39.25643 -38.94674 -37.44218 -35.52943 -34.04196 -33.70896 -31.94592 -31.23407 -30.42389 -28.68518 -27.77666 -27.59274 -24.95440 -24.37913 -22.79542 -22.31168 -22.20572 -20.92494 -20.50067 -19.50004 -18.63115 -18.10444 -17.47560 -16.92957 -16.74721 -16.46633 -16.19044 -16.01355 -15.77874 -15.54541 -15.42713 -15.27139 -14.86074 -14.61829 -14.27797 -13.94580 -13.72055 -13.57659 -13.56258 -13.51814 -13.01761 -12.97755 -12.86056 -12.63438 -12.53294 -12.36294 -12.22563 -12.13899 -12.05153 -11.29381 -10.79537 -10.54568 -10.41917 -10.19350 -9.90518 -9.34085 -9.12547 -8.77429 -8.50991 -6.46440 -0.08139 0.10096 1.01315 1.34187 1.43742 1.48791 1.55607 1.71896 2.04246 2.27489 2.43087 2.51255 2.90125 3.24566 3.32124 3.41149 3.83171 3.93696 4.01035 4.10367 4.18329 4.24799 4.31198 4.43855 4.48588 4.57858 4.60349 4.63816 4.68198 4.79927 4.87411 4.94251 4.97630 5.15992 5.19140 5.25065 5.35333 5.38551 5.42575 5.57229 5.59070 5.69278 5.79527 5.99803 6.11354 6.21826 6.33572 6.37309 6.63922 6.87106 7.44035 7.65451 8.47141 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.004218 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.024866 B = 6636.889611 C = 9108.511752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.518 5.518 3 C 0.123 3.877 4 C -0.183 4.183 5 C -0.222 4.222 6 C -0.045 4.045 7 O -0.192 6.192 8 C -0.029 4.029 9 C 0.131 3.869 10 C 0.353 3.647 11 N -0.530 5.530 12 C 0.136 3.864 13 C -0.126 4.126 14 C -0.072 4.072 15 C -0.151 4.151 16 C -0.068 4.068 17 C -0.239 4.239 18 C 0.494 3.506 19 O -0.553 6.553 20 N -0.369 5.369 21 C -0.402 4.402 22 H 0.126 0.874 23 C 0.031 3.969 24 N -0.850 5.850 25 Si 0.993 3.007 26 H -0.238 1.238 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.011 0.989 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.150 0.850 35 H 0.232 0.768 36 H 0.218 0.782 37 H 0.110 0.890 38 H 0.060 0.940 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.109 0.891 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 10.835 -12.686 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.242 5.242 3 C -0.004 4.004 4 C -0.184 4.184 5 C -0.241 4.241 6 C -0.111 4.111 7 O -0.087 6.087 8 C -0.097 4.097 9 C 0.002 3.998 10 C 0.089 3.911 11 N -0.256 5.256 12 C 0.022 3.978 13 C -0.145 4.145 14 C -0.092 4.092 15 C -0.169 4.169 16 C -0.087 4.087 17 C -0.246 4.246 18 C 0.290 3.710 19 O -0.432 6.432 20 N -0.074 5.074 21 C -0.529 4.529 22 H 0.143 0.857 23 C -0.180 4.180 24 N -0.480 5.480 25 Si 0.814 3.186 26 H -0.161 1.161 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.168 0.832 35 H 0.248 0.752 36 H 0.234 0.766 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.166 0.834 40 H 0.188 0.812 41 H 0.175 0.825 42 H 0.127 0.873 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.129 10.530 -13.299 17.096 hybrid contribution 0.245 -0.762 2.822 2.933 sum -1.884 9.768 -10.477 14.447 Atomic orbital electron populations 1.22400 0.86938 1.02487 0.99502 1.61706 1.08830 1.12570 1.41078 1.20437 1.00696 0.86423 0.92842 1.20324 0.97087 1.03837 0.97192 1.21941 1.00263 1.03930 0.98010 1.24581 0.88830 1.03127 0.94581 1.84069 1.29885 1.54419 1.40364 1.24234 1.00172 0.98579 0.86748 1.20720 1.01409 0.84855 0.92809 1.23431 0.88590 0.93645 0.85389 1.68585 1.20328 1.15825 1.20816 1.19342 0.95678 0.88333 0.94477 1.20989 0.99846 0.97562 0.96142 1.21558 0.97001 0.91389 0.99213 1.21336 1.00315 1.01435 0.93839 1.21012 0.96302 0.93501 0.97934 1.21011 1.07986 0.97638 0.97961 1.18856 0.82967 0.82428 0.86717 1.90584 1.55760 1.53309 1.43531 1.42358 1.40293 1.06147 1.18595 1.19993 1.18676 1.29627 0.84570 0.85696 1.26403 0.96962 0.93429 1.01246 1.69929 1.22479 1.32036 1.23591 0.85038 0.77645 0.80175 0.75755 1.16114 1.20996 1.19872 0.90800 0.91350 0.97011 0.88791 0.93748 0.83178 0.75158 0.76567 0.87167 0.92187 0.83412 0.81187 0.82543 0.87269 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 8.88 127.69 1.13 2.22 16 2 N -0.52 -15.89 4.42 -931.66 -4.12 -20.00 16 3 C 0.12 2.98 5.48 85.56 0.47 3.45 16 4 C -0.18 -4.18 4.99 -19.94 -0.10 -4.28 16 5 C -0.22 -4.54 9.58 22.19 0.21 -4.33 16 6 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 7 O -0.19 -4.05 10.65 -2.47 -0.03 -4.08 16 8 C -0.03 -0.62 12.01 66.97 0.80 0.19 16 9 C 0.13 4.68 4.08 85.56 0.35 5.03 16 10 C 0.35 15.89 7.20 137.94 0.99 16.88 16 11 N -0.53 -22.86 7.07 -179.54 -1.27 -24.13 16 12 C 0.14 5.92 6.63 39.65 0.26 6.18 16 13 C -0.13 -4.23 10.03 22.48 0.23 -4.00 16 14 C -0.07 -1.99 10.00 22.30 0.22 -1.77 16 15 C -0.15 -4.67 10.02 22.32 0.22 -4.44 16 16 C -0.07 -2.85 9.68 22.44 0.22 -2.63 16 17 C -0.24 -11.68 5.89 -19.96 -0.12 -11.80 16 18 C 0.49 28.14 6.93 86.44 0.60 28.74 16 19 O -0.55 -34.96 14.27 -4.41 -0.06 -35.03 16 20 N -0.37 -19.46 2.68 -460.25 -1.23 -20.69 16 21 C -0.40 -20.85 8.24 84.07 0.69 -20.15 16 22 H 0.13 5.70 7.07 -2.91 -0.02 5.67 16 23 C 0.03 1.65 4.36 84.98 0.37 2.02 16 24 N -0.85 -49.82 11.54 21.68 0.25 -49.57 16 25 Si 0.99 41.41 29.60 68.60 2.03 43.44 16 26 H -0.24 -8.64 7.11 99.48 0.71 -7.94 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.07 2.10 6.34 -2.38 -0.02 2.08 16 30 H 0.07 2.53 5.59 -2.39 -0.01 2.51 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 2.00 7.93 -2.39 -0.02 1.98 16 33 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.23 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.22 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.11 3.55 7.37 -2.38 -0.02 3.54 16 38 H 0.06 2.22 8.02 -2.39 -0.02 2.20 16 39 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 40 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 41 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 42 H 0.11 4.76 7.83 -2.91 -0.02 4.74 16 43 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -75.00 360.71 3.99 -71.01 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 1.04 Total: 27.71 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 7.37 Total: 11.34 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -6.37 Total: -114.39 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.09 Total: -39.11 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -75.00 3.99 -71.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744389513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.349 kcal (2) G-P(sol) polarization free energy of solvation -74.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds