Wall clock time and date at job start Sat Apr 11 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46733 * 2 1 4 4 O 1.42896 * 109.46790 * 240.00007 * 2 1 3 5 5 C 1.35946 * 116.99927 * 84.96283 * 4 2 1 6 6 C 1.38709 * 120.03073 * 174.28191 * 5 4 2 7 7 C 1.38150 * 119.97053 * 179.79110 * 6 5 4 8 8 C 1.38454 * 120.03004 * 0.48976 * 7 6 5 9 9 F 1.35098 * 119.97018 * 179.72632 * 8 7 6 10 10 C 1.38461 * 120.05838 * 359.74213 * 8 7 6 11 11 C 1.38146 * 120.02833 * 0.02562 * 10 8 7 12 12 C 1.50701 * 109.47078 * 120.00236 * 2 1 3 13 13 O 1.21280 * 119.99916 * 120.00000 * 12 2 1 14 14 N 1.34774 * 119.99642 * 299.99823 * 12 2 1 15 15 N 1.40102 * 119.99996 * 180.02562 * 14 12 2 16 16 C 1.34771 * 120.00584 * 179.97438 * 15 14 12 17 17 O 1.21586 * 120.00439 * 179.97438 * 16 15 14 18 18 N 1.34777 * 119.99511 * 359.97438 * 16 15 14 19 19 C 1.46503 * 119.99959 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47381 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.47125 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99740 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99669 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00557 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99852 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47180 * 60.00018 * 25 23 21 27 27 H 1.48500 * 109.47305 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47021 * 300.00348 * 25 23 21 29 29 H 1.09004 * 109.47182 * 300.00238 * 1 2 3 30 30 H 1.09002 * 109.47773 * 59.99811 * 1 2 3 31 31 H 1.09004 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.01569 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.98550 * 180.21621 * 7 6 5 34 34 H 1.07997 * 119.98049 * 180.02562 * 10 8 7 35 35 H 1.08003 * 120.01101 * 179.97438 * 11 10 8 36 36 H 0.97003 * 120.00633 * 359.97438 * 14 12 2 37 37 H 0.97010 * 119.99594 * 359.71851 * 15 14 12 38 38 H 0.96998 * 120.00390 * 359.97438 * 18 16 15 39 39 H 1.09000 * 109.47202 * 300.00185 * 19 18 16 40 40 H 1.09003 * 109.46844 * 59.99539 * 19 18 16 41 41 H 1.08995 * 109.47174 * 300.00027 * 20 19 18 42 42 H 1.08996 * 109.46578 * 60.00188 * 20 19 18 43 43 H 0.96993 * 120.00269 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1117 0.0627 -2.3047 6 6 2.6776 -0.4943 -3.4420 7 6 2.7802 0.2536 -4.5990 8 6 2.3276 1.5619 -4.6207 9 9 2.4336 2.2940 -5.7511 10 6 1.7669 2.1207 -3.4847 11 6 1.6587 1.3735 -2.3279 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 7 2.1741 -0.9101 3.5985 16 6 1.8490 -0.4494 4.8226 17 8 2.2543 -1.0226 5.8153 18 7 1.0746 0.6467 4.9462 19 6 0.7207 1.1472 6.2768 20 6 -0.1578 2.3920 6.1365 21 6 -0.5224 2.9065 7.5053 22 1 -0.1630 2.3968 8.3870 23 6 -1.3138 4.0283 7.6317 24 7 -1.7510 4.6492 6.5580 25 14 -1.7651 4.6665 9.3284 26 1 -0.5276 5.0148 10.0716 27 1 -2.6179 5.8746 9.1922 28 1 -2.5091 3.6170 10.0702 29 1 -0.3634 0.5139 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.0345 -1.5135 -3.4242 33 1 3.2176 -0.1810 -5.4857 34 1 1.4139 3.1412 -3.5032 35 1 1.2217 1.8098 -1.4418 36 1 1.1494 0.5389 2.5436 37 1 2.7288 -1.7010 3.5094 38 1 0.7516 1.1042 4.1542 39 1 0.1753 0.3767 6.8217 40 1 1.6291 1.4036 6.8220 41 1 0.3879 3.1624 5.5919 42 1 -1.0662 2.1359 5.5912 43 1 -2.3081 5.4382 6.6470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753265315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:57 Heat of formation + Delta-G solvation = -84.585893 kcal Electronic energy + Delta-G solvation = -27933.795588 eV Core-core repulsion = 23509.757578 eV Total energy + Delta-G solvation = -4424.038010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.20562 -41.23519 -40.31427 -39.24074 -37.63719 -35.82759 -35.10110 -33.23851 -32.88479 -31.66074 -30.56549 -29.69153 -29.39432 -25.34322 -24.90203 -23.79071 -22.81118 -21.84489 -21.15280 -20.75258 -19.24142 -18.99892 -17.95221 -17.77064 -17.07308 -16.46712 -16.35221 -16.20004 -15.93175 -15.59118 -15.39127 -15.13514 -14.80753 -14.70040 -14.59034 -14.24429 -13.93591 -13.74708 -13.62032 -13.46672 -13.21649 -12.93008 -12.73152 -12.36894 -12.26079 -11.62638 -11.44756 -11.33051 -11.30347 -11.09261 -10.75288 -10.57776 -10.46862 -10.20232 -9.71315 -9.68531 -9.40450 -8.89856 -8.59193 -8.53718 -8.36780 -6.18672 -4.21546 0.65069 0.72437 1.37668 1.99116 2.62197 3.07963 3.18681 3.23162 3.25911 3.30091 3.34428 3.74267 3.86498 4.09264 4.21477 4.26191 4.31043 4.34308 4.62090 4.77666 4.82451 4.90736 5.05991 5.13853 5.19035 5.37907 5.53718 5.63218 5.67166 5.71123 5.97059 6.09968 6.21517 6.22841 6.58334 6.61737 6.68069 6.78913 7.07766 7.38205 7.48026 7.52418 7.79413 8.09489 8.21648 8.57040 8.83893 9.43921 10.92881 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.001999 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.309910 B =14005.337021 C =15917.588626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.077 3.923 3 H 0.109 0.891 4 O -0.280 6.280 5 C 0.123 3.877 6 C -0.119 4.119 7 C -0.112 4.112 8 C 0.059 3.941 9 F -0.141 7.141 10 C -0.110 4.110 11 C -0.184 4.184 12 C 0.519 3.481 13 O -0.512 6.512 14 N -0.520 5.520 15 N -0.536 5.536 16 C 0.708 3.292 17 O -0.572 6.572 18 N -0.734 5.734 19 C 0.136 3.864 20 C 0.013 3.987 21 C -0.523 4.523 22 H 0.060 0.940 23 C 0.060 3.940 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.275 1.275 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.423 0.577 37 H 0.439 0.561 38 H 0.387 0.613 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -6.219 -23.572 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.016 3.984 3 H 0.127 0.873 4 O -0.192 6.192 5 C 0.077 3.923 6 C -0.137 4.137 7 C -0.131 4.131 8 C 0.040 3.960 9 F -0.120 7.120 10 C -0.129 4.129 11 C -0.202 4.202 12 C 0.303 3.697 13 O -0.384 6.384 14 N -0.273 5.273 15 N -0.295 5.295 16 C 0.407 3.593 17 O -0.446 6.446 18 N -0.390 5.390 19 C 0.013 3.987 20 C -0.024 4.024 21 C -0.562 4.562 22 H 0.078 0.922 23 C -0.142 4.142 24 N -0.533 5.533 25 Si 0.725 3.275 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.201 1.201 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.265 0.735 37 H 0.285 0.715 38 H 0.221 0.779 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.953 -7.241 -22.859 24.706 hybrid contribution -0.608 1.142 0.295 1.327 sum 5.345 -6.099 -22.564 23.977 Atomic orbital electron populations 1.22457 0.91661 1.05195 1.04751 1.22040 0.96162 0.96958 0.83271 0.87349 1.86215 1.81044 1.36519 1.15416 1.19039 0.96049 0.90380 0.86838 1.20316 1.01726 1.01576 0.90097 1.20988 1.00529 0.92535 0.99058 1.17617 1.04386 0.90641 0.83377 1.91503 1.94428 1.76951 1.49099 1.20978 0.99414 1.01054 0.91436 1.21215 1.05451 0.93802 0.99743 1.20120 0.81399 0.85544 0.82626 1.90790 1.36683 1.25249 1.85679 1.44634 1.53586 1.30484 0.98612 1.44732 1.57541 1.32168 0.95040 1.15874 0.80118 0.81805 0.81471 1.91018 1.59749 1.60725 1.33070 1.45612 1.53409 1.28527 1.11431 1.21746 0.99472 0.97691 0.79760 1.19331 0.94169 0.90492 0.98424 1.20982 1.31662 1.11508 0.92007 0.92170 1.24981 0.95678 0.96489 0.97052 1.69923 1.35137 1.19940 1.28323 0.86555 0.78562 0.78267 0.84070 1.20065 1.21232 1.20069 0.89583 0.89892 0.90043 0.83840 0.83913 0.84157 0.83960 0.73479 0.71495 0.77935 0.92214 0.92230 0.95911 0.95906 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 9.07 37.16 0.34 -0.62 16 2 C 0.08 0.55 2.64 -27.88 -0.07 0.48 16 3 H 0.11 0.51 6.31 -51.93 -0.33 0.18 16 4 O -0.28 -2.62 9.33 -39.48 -0.37 -2.99 16 5 C 0.12 0.98 6.60 -39.24 -0.26 0.73 16 6 C -0.12 -0.88 9.98 -39.44 -0.39 -1.27 16 7 C -0.11 -0.77 10.02 -39.53 -0.40 -1.16 16 8 C 0.06 0.46 7.30 -39.42 -0.29 0.17 16 9 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 10 C -0.11 -0.74 10.02 -39.53 -0.40 -1.14 16 11 C -0.18 -1.19 8.24 -39.44 -0.33 -1.52 16 12 C 0.52 5.31 7.35 -10.99 -0.08 5.23 16 13 O -0.51 -7.31 16.34 -14.35 -0.23 -7.55 16 14 N -0.52 -4.96 6.15 31.22 0.19 -4.76 16 15 N -0.54 -6.83 6.26 27.63 0.17 -6.66 16 16 C 0.71 11.38 8.68 -86.92 -0.75 10.63 16 17 O -0.57 -11.52 17.18 5.29 0.09 -11.43 16 18 N -0.73 -11.36 5.52 -65.22 -0.36 -11.72 16 19 C 0.14 2.64 5.61 -4.04 -0.02 2.62 16 20 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 21 C -0.52 -13.72 9.11 -34.44 -0.31 -14.03 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 25 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.09 0.31 7.57 -51.93 -0.39 -0.08 16 30 H 0.08 0.35 6.91 -51.93 -0.36 -0.01 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.14 0.61 5.43 -52.48 -0.28 0.32 16 36 H 0.42 2.94 6.12 -182.59 -1.12 1.83 16 37 H 0.44 5.69 8.10 -182.59 -1.48 4.21 16 38 H 0.39 4.76 6.39 -40.82 -0.26 4.50 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -34.09 375.13 -9.45 -43.54 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.15 Total: 3.86 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -3.21 Total: 1.78 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.74 Total: -47.21 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.51 Total: -21.96 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.09 -9.45 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753265315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.048 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds