Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46733 * 2 1 4 4 O 1.42896 * 109.46790 * 240.00007 * 2 1 3 5 5 C 1.35946 * 116.99927 * 84.96283 * 4 2 1 6 6 C 1.38709 * 120.03073 * 174.28191 * 5 4 2 7 7 C 1.38150 * 119.97053 * 179.79110 * 6 5 4 8 8 C 1.38454 * 120.03004 * 0.48976 * 7 6 5 9 9 F 1.35098 * 119.97018 * 179.72632 * 8 7 6 10 10 C 1.38461 * 120.05838 * 359.74213 * 8 7 6 11 11 C 1.38146 * 120.02833 * 0.02562 * 10 8 7 12 12 C 1.50701 * 109.47078 * 120.00236 * 2 1 3 13 13 O 1.21280 * 119.99916 * 120.00000 * 12 2 1 14 14 N 1.34774 * 119.99642 * 299.99823 * 12 2 1 15 15 N 1.40102 * 119.99996 * 180.02562 * 14 12 2 16 16 C 1.34771 * 120.00584 * 179.97438 * 15 14 12 17 17 O 1.21586 * 120.00439 * 179.97438 * 16 15 14 18 18 N 1.34777 * 119.99511 * 359.97438 * 16 15 14 19 19 C 1.46503 * 119.99959 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47381 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.47125 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99740 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99669 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00557 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99852 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47180 * 60.00018 * 25 23 21 27 27 H 1.48500 * 109.47305 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47021 * 300.00348 * 25 23 21 29 29 H 1.09004 * 109.47182 * 300.00238 * 1 2 3 30 30 H 1.09002 * 109.47773 * 59.99811 * 1 2 3 31 31 H 1.09004 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.01569 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.98550 * 180.21621 * 7 6 5 34 34 H 1.07997 * 119.98049 * 180.02562 * 10 8 7 35 35 H 1.08003 * 120.01101 * 179.97438 * 11 10 8 36 36 H 0.97003 * 120.00633 * 359.97438 * 14 12 2 37 37 H 0.97010 * 119.99594 * 359.71851 * 15 14 12 38 38 H 0.96998 * 120.00390 * 359.97438 * 18 16 15 39 39 H 1.09000 * 109.47202 * 300.00185 * 19 18 16 40 40 H 1.09003 * 109.46844 * 59.99539 * 19 18 16 41 41 H 1.08995 * 109.47174 * 300.00027 * 20 19 18 42 42 H 1.08996 * 109.46578 * 60.00188 * 20 19 18 43 43 H 0.96993 * 120.00269 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1117 0.0627 -2.3047 6 6 2.6776 -0.4943 -3.4420 7 6 2.7802 0.2536 -4.5990 8 6 2.3276 1.5619 -4.6207 9 9 2.4336 2.2940 -5.7511 10 6 1.7669 2.1207 -3.4847 11 6 1.6587 1.3735 -2.3279 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 7 2.1741 -0.9101 3.5985 16 6 1.8490 -0.4494 4.8226 17 8 2.2543 -1.0226 5.8153 18 7 1.0746 0.6467 4.9462 19 6 0.7207 1.1472 6.2768 20 6 -0.1578 2.3920 6.1365 21 6 -0.5224 2.9065 7.5053 22 1 -0.1630 2.3968 8.3870 23 6 -1.3138 4.0283 7.6317 24 7 -1.7510 4.6492 6.5580 25 14 -1.7651 4.6665 9.3284 26 1 -0.5276 5.0148 10.0716 27 1 -2.6179 5.8746 9.1922 28 1 -2.5091 3.6170 10.0702 29 1 -0.3634 0.5139 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.0345 -1.5135 -3.4242 33 1 3.2176 -0.1810 -5.4857 34 1 1.4139 3.1412 -3.5032 35 1 1.2217 1.8098 -1.4418 36 1 1.1494 0.5389 2.5436 37 1 2.7288 -1.7010 3.5094 38 1 0.7516 1.1042 4.1542 39 1 0.1753 0.3767 6.8217 40 1 1.6291 1.4036 6.8220 41 1 0.3879 3.1624 5.5919 42 1 -1.0662 2.1359 5.5912 43 1 -2.3081 5.4382 6.6470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753265315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -107.582288 kcal Electronic energy + Delta-G solvation = -27934.792787 eV Core-core repulsion = 23509.757578 eV Total energy + Delta-G solvation = -4425.035209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.81657 -42.01550 -41.28295 -40.24124 -38.25995 -36.91792 -36.68822 -34.76614 -33.91156 -32.26083 -31.64755 -30.91008 -30.18873 -26.76157 -25.88992 -24.34272 -23.43628 -23.38139 -22.19476 -21.94256 -20.36410 -19.59740 -18.82905 -18.44238 -18.34608 -17.90509 -17.16050 -17.01368 -16.75302 -16.52584 -16.48356 -16.41752 -15.84821 -15.69941 -15.66562 -15.25532 -15.01517 -14.77945 -14.41289 -14.25816 -14.15079 -13.75551 -13.46815 -13.21047 -13.19224 -12.96042 -12.79406 -12.64966 -12.53304 -12.20583 -12.02613 -11.95716 -11.79958 -11.55602 -11.34705 -11.15431 -10.57206 -10.24837 -10.18416 -9.49625 -9.15978 -8.21025 -6.29480 0.13987 0.17504 0.48514 1.15553 1.45805 1.46385 1.54085 1.78809 1.94031 2.17186 2.45232 2.55334 3.01298 3.14786 3.33503 3.59975 3.73271 3.76462 3.83114 3.88023 4.14451 4.29828 4.44065 4.47085 4.54898 4.66234 4.70790 4.89766 4.91064 5.10511 5.14200 5.15075 5.16769 5.20198 5.21458 5.40864 5.55776 5.64202 5.66372 5.82910 6.07947 6.20091 6.26152 6.52646 6.83059 7.08605 7.30454 7.39445 8.90178 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.001999 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.309910 B =14005.337021 C =15917.588626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.080 3.920 3 H 0.140 0.860 4 O -0.303 6.303 5 C 0.110 3.890 6 C -0.130 4.130 7 C -0.112 4.112 8 C 0.040 3.960 9 F -0.150 7.150 10 C -0.111 4.111 11 C -0.180 4.180 12 C 0.522 3.478 13 O -0.555 6.555 14 N -0.507 5.507 15 N -0.528 5.528 16 C 0.713 3.287 17 O -0.614 6.614 18 N -0.723 5.723 19 C 0.155 3.845 20 C 0.024 3.976 21 C -0.546 4.546 22 H 0.058 0.942 23 C 0.011 3.989 24 N -0.922 5.922 25 Si 0.958 3.042 26 H -0.271 1.271 27 H -0.283 1.283 28 H -0.271 1.271 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.437 0.563 37 H 0.441 0.559 38 H 0.405 0.595 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -5.226 -23.950 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.019 3.981 3 H 0.157 0.843 4 O -0.216 6.216 5 C 0.064 3.936 6 C -0.149 4.149 7 C -0.131 4.131 8 C 0.021 3.979 9 F -0.129 7.129 10 C -0.130 4.130 11 C -0.198 4.198 12 C 0.308 3.692 13 O -0.430 6.430 14 N -0.262 5.262 15 N -0.285 5.285 16 C 0.412 3.588 17 O -0.491 6.491 18 N -0.380 5.380 19 C 0.031 3.969 20 C -0.014 4.014 21 C -0.584 4.584 22 H 0.076 0.924 23 C -0.188 4.188 24 N -0.562 5.562 25 Si 0.783 3.217 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.185 0.815 36 H 0.282 0.718 37 H 0.287 0.713 38 H 0.241 0.759 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.340 -6.229 -23.289 24.692 hybrid contribution -0.399 0.802 0.324 0.952 sum 4.941 -5.427 -22.964 24.109 Atomic orbital electron populations 1.22507 0.89903 1.04968 1.06491 1.22219 0.97262 0.97473 0.81144 0.84261 1.86180 1.81550 1.37691 1.16182 1.19224 0.96707 0.91074 0.86550 1.20480 1.02034 1.01999 0.90351 1.21153 1.00135 0.92298 0.99471 1.17891 1.05328 0.91091 0.83570 1.91477 1.94603 1.77186 1.49663 1.21223 0.98816 1.01887 0.91061 1.21442 1.04813 0.93039 1.00501 1.20812 0.80275 0.84909 0.83241 1.90777 1.38692 1.27301 1.86251 1.44678 1.53515 1.30598 0.97410 1.44418 1.56742 1.31954 0.95347 1.15775 0.79784 0.81452 0.81792 1.90991 1.61207 1.61908 1.35041 1.45190 1.53419 1.28579 1.10807 1.21249 0.98215 0.96087 0.81362 1.19141 0.94155 0.91374 0.96728 1.21424 1.31695 1.11807 0.93497 0.92393 1.25751 0.95722 0.96822 1.00507 1.70007 1.35752 1.20377 1.30052 0.85606 0.78368 0.77756 0.79962 1.19593 1.20789 1.19590 0.87583 0.88394 0.91313 0.83483 0.82404 0.82456 0.81503 0.71804 0.71349 0.75883 0.93163 0.93207 0.96687 0.96640 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.07 71.98 0.65 -0.75 16 2 C 0.08 0.96 2.64 29.85 0.08 1.04 16 3 H 0.14 0.80 6.31 -2.39 -0.02 0.79 16 4 O -0.30 -5.29 9.33 -73.90 -0.69 -5.98 16 5 C 0.11 1.60 6.60 22.49 0.15 1.75 16 6 C -0.13 -1.83 9.98 22.36 0.22 -1.61 16 7 C -0.11 -1.44 10.02 22.30 0.22 -1.21 16 8 C 0.04 0.59 7.30 22.37 0.16 0.75 16 9 F -0.15 -2.55 17.27 44.97 0.78 -1.77 16 10 C -0.11 -1.28 10.02 22.30 0.22 -1.06 16 11 C -0.18 -1.90 8.24 22.36 0.18 -1.71 16 12 C 0.52 9.89 7.35 87.66 0.64 10.53 16 13 O -0.56 -15.65 16.34 16.01 0.26 -15.39 16 14 N -0.51 -8.69 6.15 -173.54 -1.07 -9.76 16 15 N -0.53 -12.91 6.26 -184.75 -1.16 -14.06 16 16 C 0.71 22.29 8.68 179.06 1.55 23.84 16 17 O -0.61 -24.69 17.18 -3.99 -0.07 -24.76 16 18 N -0.72 -21.42 5.52 -478.53 -2.64 -24.07 16 19 C 0.15 5.94 5.61 86.38 0.48 6.43 16 20 C 0.02 1.06 5.09 29.85 0.15 1.21 16 21 C -0.55 -28.39 9.11 25.60 0.23 -28.16 16 22 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 23 C 0.01 0.59 5.46 84.65 0.46 1.05 16 24 N -0.92 -50.52 13.29 21.45 0.28 -50.23 16 25 Si 0.96 41.52 29.54 68.60 2.03 43.55 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 29 H 0.11 0.39 7.57 -2.38 -0.02 0.38 16 30 H 0.10 0.51 6.91 -2.39 -0.02 0.50 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.17 0.80 5.43 -2.91 -0.02 0.78 16 36 H 0.44 4.85 6.12 -213.32 -1.31 3.55 16 37 H 0.44 11.20 8.10 -213.31 -1.73 9.47 16 38 H 0.40 9.08 6.39 -92.71 -0.59 8.49 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -73.41 375.13 0.62 -72.79 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -2.53 Total: 17.59 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.43 Total: 12.10 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -4.58 Total: -98.12 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.50 Total: -46.13 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -73.41 0.62 -72.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753265315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.796 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds