Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21724 * 119.99736 * 2 1 4 4 N 1.32249 * 119.99911 * 180.02562 * 2 1 3 5 5 C 1.34739 * 119.99796 * 244.53661 * 4 2 1 6 6 C 1.41030 * 120.71204 * 5.52625 * 5 4 2 7 7 C 1.35412 * 119.34343 * 180.29324 * 6 5 4 8 8 N 1.34783 * 120.88876 * 359.68292 * 7 6 5 9 9 H 0.97003 * 119.22189 * 180.02562 * 8 7 6 10 10 C 1.35533 * 121.54763 * 0.04339 * 8 7 6 11 11 C 1.35966 * 120.56890 * 359.97438 * 10 8 7 12 12 N 1.40191 * 120.46376 * 180.02562 * 11 10 8 13 13 C 1.34774 * 120.00180 * 325.45920 * 12 11 10 14 14 O 1.21302 * 119.99641 * 4.28925 * 13 12 11 15 15 C 1.50698 * 120.00433 * 184.28855 * 13 12 11 16 16 C 1.50698 * 109.47584 * 179.97438 * 15 13 12 17 17 C 1.37634 * 120.12719 * 265.00325 * 16 15 13 18 18 C 1.38618 * 120.24571 * 180.25051 * 17 16 15 19 19 C 1.38658 * 120.50223 * 359.44566 * 18 17 16 20 20 C 1.37597 * 120.24425 * 0.55086 * 19 18 17 21 21 C 1.40704 * 120.12428 * 84.97598 * 16 15 13 22 22 C 1.41390 * 120.24724 * 0.02562 * 21 16 15 23 23 H 1.08000 * 120.00003 * 325.22833 * 22 21 16 24 24 C 1.39945 * 120.00142 * 145.22597 * 22 21 16 25 25 N 1.30822 * 119.99668 * 4.41583 * 24 22 21 26 26 Si 1.86802 * 120.00168 * 184.41247 * 24 22 21 27 27 H 1.48508 * 109.46786 * 0.02562 * 26 24 22 28 28 H 1.48489 * 109.46938 * 120.00018 * 26 24 22 29 29 H 1.48501 * 109.46964 * 240.00283 * 26 24 22 30 30 H 1.08994 * 109.47380 * 269.99875 * 1 2 3 31 31 H 1.08999 * 109.47150 * 30.00309 * 1 2 3 32 32 H 1.09003 * 109.46744 * 150.00128 * 1 2 3 33 33 H 1.07996 * 120.32377 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.55194 * 179.70022 * 7 6 5 35 35 H 1.08000 * 119.71855 * 179.97438 * 10 8 7 36 36 H 0.97001 * 119.99771 * 145.46098 * 12 11 10 37 37 H 1.09004 * 109.47128 * 59.99603 * 15 13 12 38 38 H 1.09002 * 109.46902 * 300.00427 * 15 13 12 39 39 H 1.07997 * 119.88128 * 359.97332 * 17 16 15 40 40 H 1.07999 * 119.74742 * 179.70147 * 18 17 16 41 41 H 1.07995 * 119.87863 * 180.30242 * 19 18 17 42 42 H 1.08005 * 120.12630 * 179.74552 * 20 19 18 43 43 H 0.97002 * 119.99782 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1156 1.0542 0.0000 4 7 2.1683 -1.1453 -0.0005 5 6 2.9396 -1.4784 1.0529 6 6 2.9626 -0.6745 2.2114 7 6 3.7525 -1.0321 3.2516 8 7 4.5089 -2.1462 3.1950 9 1 5.0656 -2.3798 3.9543 10 6 4.5101 -2.9477 2.1020 11 6 3.7401 -2.6464 1.0227 12 7 3.7427 -3.4773 -0.1065 13 6 4.8749 -4.1077 -0.4767 14 8 5.8709 -4.0188 0.2101 15 6 4.9037 -4.9232 -1.7436 16 6 6.2760 -5.5181 -1.9272 17 6 7.2084 -4.8757 -2.7098 18 6 8.4697 -5.4233 -2.8846 19 6 8.8110 -6.6162 -2.2656 20 6 7.8949 -7.2756 -1.4788 21 6 6.6093 -6.7321 -1.2988 22 6 5.6597 -7.4009 -0.4926 23 1 4.9588 -6.8323 0.1006 24 6 5.6279 -8.7997 -0.4633 25 7 6.5307 -9.4882 -1.1131 26 14 4.2965 -9.6837 0.5039 27 1 3.4038 -8.6844 1.1443 28 1 3.5028 -10.5390 -0.4145 29 1 4.9241 -10.5301 1.5503 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3603 0.2202 2.2664 34 1 3.7765 -0.4163 4.1385 35 1 5.1280 -3.8334 2.0883 36 1 2.9296 -3.5984 -0.6213 37 1 4.6691 -4.2823 -2.5936 38 1 4.1663 -5.7232 -1.6775 39 1 6.9548 -3.9438 -3.1931 40 1 9.1935 -4.9148 -3.5043 41 1 9.7983 -7.0313 -2.4048 42 1 8.1614 -8.2068 -1.0009 43 1 6.5089 -10.4577 -1.0925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753473077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = 9.567126 kcal Electronic energy + Delta-G solvation = -28445.376427 eV Core-core repulsion = 24456.190423 eV Total energy + Delta-G solvation = -3989.186004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27478 -39.39475 -39.02621 -37.43415 -35.54971 -34.08677 -33.57334 -31.96203 -31.32966 -30.31906 -29.43510 -29.13056 -26.82431 -25.07989 -24.40492 -23.32743 -20.96217 -20.83130 -19.77793 -19.45652 -19.23090 -17.36743 -17.13993 -17.02817 -16.45662 -16.10899 -15.38298 -15.28525 -14.96984 -14.55282 -14.47373 -14.37074 -14.22853 -13.69067 -13.52664 -13.34472 -13.14421 -12.71363 -12.60587 -12.38261 -12.03757 -11.79792 -11.59925 -11.54483 -11.21428 -11.08848 -11.02703 -10.65698 -10.42941 -10.37028 -10.35732 -9.55925 -9.49010 -9.40441 -9.15199 -9.07530 -8.93998 -7.35404 -7.28221 -7.19632 -6.62435 -4.41573 0.73196 1.08110 2.39711 2.57213 2.75966 2.94583 3.05336 3.05685 3.08773 3.23017 3.42114 3.61989 3.93707 4.17912 4.30098 4.69713 4.74248 4.90622 4.93539 5.23341 5.35626 5.41052 5.51308 5.56369 5.74496 5.75641 5.86913 5.99184 6.08672 6.27578 6.39535 6.40158 6.48663 6.50056 6.66172 6.77164 6.94152 7.10834 7.28620 7.42768 7.63339 7.73388 7.76576 7.89682 8.08001 8.10519 8.31433 8.36932 8.59821 8.66370 8.92545 8.99959 10.28351 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.003224 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.873418 B = 8682.227735 C = 9424.957421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.499 3.501 3 O -0.542 6.542 4 N -0.655 5.655 5 C 0.316 3.684 6 C -0.265 4.265 7 C 0.144 3.856 8 N -0.563 5.563 9 H 0.426 0.574 10 C 0.102 3.898 11 C 0.077 3.923 12 N -0.657 5.657 13 C 0.518 3.482 14 O -0.516 6.516 15 C -0.070 4.070 16 C -0.171 4.171 17 C -0.088 4.088 18 C -0.227 4.227 19 C -0.113 4.113 20 C -0.148 4.148 21 C 0.123 3.877 22 C -0.461 4.461 23 H 0.072 0.928 24 C 0.072 3.928 25 N -0.811 5.811 26 Si 0.908 3.092 27 H -0.263 1.263 28 H -0.274 1.274 29 H -0.275 1.275 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.193 0.807 36 H 0.418 0.582 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 9.388 10.641 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.287 3.713 3 O -0.421 6.421 4 N -0.393 5.393 5 C 0.160 3.840 6 C -0.295 4.295 7 C 0.010 3.990 8 N -0.165 5.165 9 H 0.263 0.737 10 C -0.031 4.031 11 C -0.025 4.025 12 N -0.304 5.304 13 C 0.308 3.692 14 O -0.390 6.390 15 C -0.109 4.109 16 C -0.173 4.173 17 C -0.106 4.106 18 C -0.246 4.246 19 C -0.132 4.132 20 C -0.168 4.168 21 C 0.121 3.879 22 C -0.492 4.492 23 H 0.090 0.910 24 C -0.143 4.143 25 N -0.438 5.438 26 Si 0.733 3.267 27 H -0.187 1.187 28 H -0.200 1.200 29 H -0.201 1.201 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.163 0.837 34 H 0.187 0.813 35 H 0.210 0.790 36 H 0.255 0.745 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.816 9.489 10.117 15.921 hybrid contribution -0.844 -0.088 0.711 1.107 sum -8.660 9.401 10.828 16.752 Atomic orbital electron populations 1.21980 0.93835 1.04223 1.03592 1.21323 0.91689 0.85587 0.72731 1.90764 1.71960 1.35152 1.44249 1.67996 1.21501 1.23125 1.26705 1.18598 0.85903 0.89836 0.89693 1.21374 1.08565 1.04862 0.94696 1.21739 0.90160 0.87414 0.99693 1.40922 1.38131 1.20474 1.16963 0.73701 1.22199 1.00425 0.96068 0.84446 1.16768 1.02851 0.93700 0.89190 1.43445 1.14227 1.45751 1.26948 1.21546 0.81313 0.78449 0.87940 1.90610 1.34000 1.60155 1.54242 1.20270 0.99508 0.98295 0.92843 1.19163 0.93334 0.99928 1.04828 1.20351 0.93900 0.97449 0.98948 1.20397 0.96972 0.99286 1.07976 1.20771 0.97986 0.95568 0.98849 1.21583 0.92776 1.01037 1.01385 1.17387 0.91577 0.89495 0.89461 1.19429 1.15159 0.90751 1.23854 0.90953 1.25840 0.96212 0.98065 0.94154 1.69766 1.31148 1.08037 1.34877 0.86261 0.81008 0.79617 0.79768 1.18698 1.19965 1.20074 0.89586 0.90359 0.89929 0.83674 0.81296 0.79025 0.74488 0.89957 0.87909 0.89594 0.89579 0.89500 0.85470 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 10.38 36.01 0.37 -1.58 16 2 C 0.50 7.84 6.00 -12.10 -0.07 7.77 16 3 O -0.54 -10.34 17.09 5.17 0.09 -10.25 16 4 N -0.65 -10.42 10.05 -10.31 -0.10 -10.52 16 5 C 0.32 4.47 6.59 -84.24 -0.56 3.91 16 6 C -0.27 -2.89 9.04 -39.53 -0.36 -3.25 16 7 C 0.14 0.96 11.14 -17.26 -0.19 0.77 16 8 N -0.56 -3.88 5.21 -13.01 -0.07 -3.95 16 9 H 0.43 1.31 8.89 -40.82 -0.36 0.94 16 10 C 0.10 1.18 9.88 -16.73 -0.17 1.01 16 11 C 0.08 1.09 6.34 -83.55 -0.53 0.56 16 12 N -0.66 -9.92 5.21 -9.79 -0.05 -9.97 16 13 C 0.52 9.42 7.29 -10.99 -0.08 9.34 16 14 O -0.52 -10.77 13.48 5.54 0.07 -10.70 16 15 C -0.07 -1.31 5.21 -29.04 -0.15 -1.46 16 16 C -0.17 -3.93 4.43 -103.91 -0.46 -4.39 16 17 C -0.09 -1.99 9.66 -39.66 -0.38 -2.37 16 18 C -0.23 -5.16 10.05 -39.29 -0.39 -5.56 16 19 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 20 C -0.15 -3.83 8.67 -38.87 -0.34 -4.17 16 21 C 0.12 3.13 5.55 -106.82 -0.59 2.54 16 22 C -0.46 -11.45 7.92 -37.74 -0.30 -11.75 16 23 H 0.07 1.73 6.98 -52.49 -0.37 1.36 16 24 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 25 N -0.81 -20.40 10.61 55.55 0.59 -19.81 16 26 Si 0.91 18.04 29.56 -169.99 -5.03 13.01 16 27 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 28 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 29 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.15 1.61 6.72 -52.49 -0.35 1.25 16 34 H 0.17 0.34 8.06 -52.49 -0.42 -0.08 16 35 H 0.19 2.49 6.15 -52.49 -0.32 2.16 16 36 H 0.42 5.64 8.61 -40.82 -0.35 5.29 16 37 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 38 H 0.10 1.86 7.21 -51.93 -0.37 1.49 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.13 3.40 6.15 -52.48 -0.32 3.08 16 43 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -35.16 369.83 -8.58 -43.74 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -4.97 Total: 12.94 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -4.69 Total: -10.06 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.37 Total: -44.26 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.16 Total: -20.95 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.16 -8.58 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753473077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.306 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds