Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21293 * 119.99952 * 2 1 4 4 N 1.34778 * 120.00164 * 179.97438 * 2 1 3 5 5 C 1.40071 * 120.00137 * 184.50584 * 4 2 1 6 6 C 1.38966 * 120.51043 * 334.42367 * 5 4 2 7 7 C 1.38728 * 118.43244 * 180.26316 * 6 5 4 8 8 C 1.38115 * 119.37018 * 359.75837 * 7 6 5 9 9 N 1.31956 * 120.99010 * 359.97091 * 8 7 6 10 10 C 1.32271 * 121.70542 * 0.02562 * 9 8 7 11 11 N 1.39522 * 119.73443 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00372 * 0.02562 * 11 10 9 13 13 O 1.21282 * 119.99622 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99992 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47259 * 180.02562 * 14 12 11 16 16 C 1.37641 * 120.12532 * 265.00620 * 15 14 12 17 17 C 1.38615 * 120.24643 * 180.29881 * 16 15 14 18 18 C 1.38663 * 120.49604 * 359.43717 * 17 16 15 19 19 C 1.37589 * 120.25037 * 0.55818 * 18 17 16 20 20 C 1.40690 * 120.12849 * 85.02218 * 15 14 12 21 21 C 1.41401 * 120.24247 * 359.95586 * 20 15 14 22 22 H 1.07997 * 120.00375 * 333.81912 * 21 20 15 23 23 C 1.39952 * 119.99783 * 153.81531 * 21 20 15 24 24 N 1.30822 * 119.99747 * 344.10578 * 23 21 20 25 25 Si 1.86795 * 119.99853 * 164.10810 * 23 21 20 26 26 H 1.48501 * 109.47334 * 90.00256 * 25 23 21 27 27 H 1.48507 * 109.46997 * 210.00140 * 25 23 21 28 28 H 1.48492 * 109.47285 * 329.99761 * 25 23 21 29 29 H 1.08993 * 109.47550 * 270.00234 * 1 2 3 30 30 H 1.09003 * 109.46927 * 30.00549 * 1 2 3 31 31 H 1.09004 * 109.46482 * 150.00237 * 1 2 3 32 32 H 0.97000 * 119.99935 * 4.51191 * 4 2 1 33 33 H 1.07998 * 120.78829 * 0.02618 * 6 5 4 34 34 H 1.07997 * 120.31836 * 179.73603 * 7 6 5 35 35 H 1.08004 * 119.50707 * 180.02562 * 8 7 6 36 36 H 0.97005 * 119.99527 * 180.02562 * 11 10 9 37 37 H 1.09003 * 109.46773 * 60.00288 * 14 12 11 38 38 H 1.08999 * 109.47278 * 300.00338 * 14 12 11 39 39 H 1.07994 * 119.87972 * 0.02562 * 16 15 14 40 40 H 1.07999 * 119.74857 * 179.69674 * 17 16 15 41 41 H 1.08003 * 119.87126 * 180.30616 * 18 17 16 42 42 H 1.07997 * 120.12770 * 179.74712 * 19 18 17 43 43 H 0.97001 * 119.99614 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5784 -1.1690 0.0958 6 6 4.3160 -0.0708 -0.3295 7 6 5.6980 -0.1210 -0.2204 8 6 6.2953 -1.2488 0.3076 9 7 5.5713 -2.2762 0.7093 10 6 4.2513 -2.2720 0.6243 11 7 3.5262 -3.3812 1.0608 12 6 4.1709 -4.4511 1.5672 13 8 5.3812 -4.4493 1.6438 14 6 3.3876 -5.6488 2.0393 15 6 4.3375 -6.6982 2.5567 16 6 4.7616 -7.7139 1.7303 17 6 5.6304 -8.6838 2.2054 18 6 6.0911 -8.6366 3.5124 19 6 5.6805 -7.6304 4.3562 20 6 4.7939 -6.6435 3.8864 21 6 4.3654 -5.6044 4.7443 22 1 4.0588 -4.6548 4.3312 23 6 4.3386 -5.8064 6.1289 24 7 4.4034 -7.0196 6.6143 25 14 4.2102 -4.3439 7.2839 26 1 2.7797 -4.0471 7.5497 27 1 4.8958 -4.6612 8.5624 28 1 4.8532 -3.1609 6.6578 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3632 -0.8901 -0.5138 32 1 1.6982 -2.0060 -0.0652 33 1 3.8252 0.7998 -0.7389 34 1 6.3013 0.7137 -0.5457 35 1 7.3711 -1.2901 0.3940 36 1 2.5581 -3.3824 0.9999 37 1 2.8122 -6.0571 1.2084 38 1 2.7093 -5.3478 2.8377 39 1 4.4127 -7.7578 0.7092 40 1 5.9542 -9.4800 1.5514 41 1 6.7717 -9.3948 3.8706 42 1 6.0373 -7.5978 5.3750 43 1 4.3852 -7.1596 7.5739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753485247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = 4.876077 kcal Electronic energy + Delta-G solvation = -28554.895038 eV Core-core repulsion = 24565.505614 eV Total energy + Delta-G solvation = -3989.389423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23102 -39.72447 -38.68654 -37.29341 -35.52950 -34.28557 -33.62118 -32.06450 -31.68976 -30.44882 -29.45913 -28.74218 -26.84259 -25.07893 -24.15886 -22.97659 -20.99295 -20.93150 -20.63088 -19.54340 -18.55389 -17.50552 -17.16810 -17.06745 -16.50614 -15.88733 -15.48590 -15.12979 -15.00758 -14.92749 -14.49009 -14.30938 -13.96882 -13.66461 -13.31648 -13.12943 -13.08248 -13.02117 -12.70029 -12.57726 -12.34078 -11.76438 -11.57539 -11.28394 -11.13796 -11.09904 -10.98269 -10.71311 -10.52432 -10.40179 -10.35175 -9.68183 -9.49251 -9.38596 -9.20104 -9.15946 -8.69695 -7.82263 -7.31865 -7.29652 -6.73886 -4.34983 1.03028 1.39249 2.25742 2.64212 2.75579 2.89542 3.06931 3.13085 3.22111 3.25254 3.27436 3.94188 4.01047 4.29214 4.56059 4.66586 4.74368 4.82683 4.96986 5.08018 5.16349 5.34636 5.43149 5.45961 5.73268 5.76081 5.93537 6.01180 6.12734 6.22152 6.26869 6.36564 6.40639 6.50770 6.77665 6.87891 6.96758 7.08367 7.29072 7.39840 7.41963 7.65203 7.71866 7.91645 8.05980 8.13088 8.22209 8.30918 8.64461 8.75943 8.91197 9.01064 10.20193 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011193 B = 0.003433 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.006269 B = 8153.404631 C = 9029.159839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.528 6.528 4 N -0.664 5.664 5 C 0.044 3.956 6 C -0.065 4.065 7 C -0.197 4.197 8 C 0.117 3.883 9 N -0.455 5.455 10 C 0.355 3.645 11 N -0.673 5.673 12 C 0.500 3.500 13 O -0.444 6.444 14 C -0.067 4.067 15 C -0.186 4.186 16 C -0.079 4.079 17 C -0.239 4.239 18 C -0.106 4.106 19 C -0.158 4.158 20 C 0.131 3.869 21 C -0.456 4.456 22 H 0.073 0.927 23 C 0.078 3.922 24 N -0.794 5.794 25 Si 0.900 3.100 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.262 1.262 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.408 0.592 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.158 0.842 36 H 0.405 0.595 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 11.034 -11.685 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.404 6.404 4 N -0.310 5.310 5 C -0.055 4.055 6 C -0.092 4.092 7 C -0.219 4.219 8 C -0.041 4.041 9 N -0.169 5.169 10 C 0.120 3.880 11 N -0.321 5.321 12 C 0.286 3.714 13 O -0.308 6.308 14 C -0.106 4.106 15 C -0.188 4.188 16 C -0.097 4.097 17 C -0.259 4.259 18 C -0.124 4.124 19 C -0.177 4.177 20 C 0.129 3.871 21 C -0.486 4.486 22 H 0.091 0.909 23 C -0.139 4.139 24 N -0.420 5.420 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.186 1.186 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.244 0.756 33 H 0.178 0.822 34 H 0.153 0.847 35 H 0.176 0.824 36 H 0.240 0.760 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.981 10.791 -10.968 16.896 hybrid contribution -1.209 0.886 0.278 1.525 sum -8.190 11.677 -10.691 17.824 Atomic orbital electron populations 1.21906 0.90389 1.05360 1.05452 1.21032 0.90939 0.82888 0.75084 1.90655 1.70125 1.31434 1.48212 1.43434 1.04779 1.09986 1.72763 1.18236 0.83238 0.97187 1.06835 1.21811 0.93478 0.97928 0.96015 1.21993 0.94798 1.00375 1.04698 1.22706 1.00243 0.87920 0.93276 1.67801 1.03495 1.28062 1.17513 1.18432 0.89176 0.86851 0.93530 1.44072 1.09790 1.15193 1.63091 1.21648 0.89589 0.83145 0.77017 1.90801 1.13606 1.78928 1.47509 1.20284 0.97945 0.91746 1.00670 1.18987 1.05449 0.98066 0.96272 1.20289 0.97749 0.95178 0.96487 1.20308 1.07102 1.02047 0.96393 1.20686 0.99512 0.98123 0.94095 1.21296 1.00011 0.96857 0.99545 1.17318 0.88183 0.91471 0.90158 1.19453 1.39175 0.99420 0.90525 0.90922 1.25856 0.92467 0.96349 0.99257 1.69813 1.35875 1.21526 1.14790 0.86436 0.79077 0.82484 0.79527 1.19561 1.19992 1.18557 0.88168 0.88394 0.89739 0.75582 0.82155 0.84694 0.82435 0.75988 0.90367 0.88367 0.89754 0.89634 0.89551 0.86516 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.31 36.00 0.37 -0.43 16 2 C 0.51 4.78 7.84 -10.99 -0.09 4.70 16 3 O -0.53 -6.99 14.07 5.55 0.08 -6.92 16 4 N -0.66 -6.08 5.18 -9.63 -0.05 -6.13 16 5 C 0.04 0.58 6.50 -83.32 -0.54 0.04 16 6 C -0.06 -0.84 8.90 -39.13 -0.35 -1.19 16 7 C -0.20 -2.41 10.10 -39.45 -0.40 -2.80 16 8 C 0.12 1.69 11.17 -17.54 -0.20 1.49 16 9 N -0.45 -8.27 7.87 -12.20 -0.10 -8.36 16 10 C 0.35 5.62 7.45 -154.45 -1.15 4.47 16 11 N -0.67 -9.91 5.37 -11.27 -0.06 -9.97 16 12 C 0.50 9.64 7.42 -10.99 -0.08 9.56 16 13 O -0.44 -10.73 14.29 5.56 0.08 -10.65 16 14 C -0.07 -1.24 5.18 -29.03 -0.15 -1.39 16 15 C -0.19 -4.38 4.43 -103.91 -0.46 -4.84 16 16 C -0.08 -1.79 9.66 -39.66 -0.38 -2.17 16 17 C -0.24 -5.53 10.05 -39.29 -0.39 -5.93 16 18 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 19 C -0.16 -4.21 8.68 -38.88 -0.34 -4.55 16 20 C 0.13 3.47 5.56 -106.83 -0.59 2.88 16 21 C -0.46 -11.96 8.14 -37.74 -0.31 -12.26 16 22 H 0.07 1.87 6.68 -52.49 -0.35 1.52 16 23 C 0.08 1.96 5.17 -17.34 -0.09 1.87 16 24 N -0.79 -20.42 10.96 55.55 0.61 -19.82 16 25 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.41 2.36 7.38 -40.82 -0.30 2.06 16 33 H 0.16 2.06 5.62 -52.49 -0.29 1.76 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 36 H 0.40 4.03 7.12 -40.82 -0.29 3.74 16 37 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 38 H 0.10 1.77 7.06 -51.93 -0.37 1.40 16 39 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 43 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -35.77 366.38 -9.36 -45.13 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.87 Total: 10.67 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -5.55 Total: -13.51 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.40 Total: -44.28 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.16 Total: -17.57 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.77 -9.36 -45.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753485247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.008 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds