Wall clock time and date at job start Sat Apr 11 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21293 * 119.99952 * 2 1 4 4 N 1.34778 * 120.00164 * 179.97438 * 2 1 3 5 5 C 1.40071 * 120.00137 * 184.50584 * 4 2 1 6 6 C 1.38966 * 120.51043 * 334.42367 * 5 4 2 7 7 C 1.38728 * 118.43244 * 180.26316 * 6 5 4 8 8 C 1.38115 * 119.37018 * 359.75837 * 7 6 5 9 9 N 1.31956 * 120.99010 * 359.97091 * 8 7 6 10 10 C 1.32271 * 121.70542 * 0.02562 * 9 8 7 11 11 N 1.39522 * 119.73443 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00372 * 0.02562 * 11 10 9 13 13 O 1.21282 * 119.99622 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99992 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47259 * 180.02562 * 14 12 11 16 16 C 1.37641 * 120.12532 * 265.00620 * 15 14 12 17 17 C 1.38615 * 120.24643 * 180.29881 * 16 15 14 18 18 C 1.38663 * 120.49604 * 359.43717 * 17 16 15 19 19 C 1.37589 * 120.25037 * 0.55818 * 18 17 16 20 20 C 1.40690 * 120.12849 * 85.02218 * 15 14 12 21 21 C 1.41401 * 120.24247 * 359.95586 * 20 15 14 22 22 H 1.07997 * 120.00375 * 333.81912 * 21 20 15 23 23 C 1.39952 * 119.99783 * 153.81531 * 21 20 15 24 24 N 1.30822 * 119.99747 * 344.10578 * 23 21 20 25 25 Si 1.86795 * 119.99853 * 164.10810 * 23 21 20 26 26 H 1.48501 * 109.47334 * 90.00256 * 25 23 21 27 27 H 1.48507 * 109.46997 * 210.00140 * 25 23 21 28 28 H 1.48492 * 109.47285 * 329.99761 * 25 23 21 29 29 H 1.08993 * 109.47550 * 270.00234 * 1 2 3 30 30 H 1.09003 * 109.46927 * 30.00549 * 1 2 3 31 31 H 1.09004 * 109.46482 * 150.00237 * 1 2 3 32 32 H 0.97000 * 119.99935 * 4.51191 * 4 2 1 33 33 H 1.07998 * 120.78829 * 0.02618 * 6 5 4 34 34 H 1.07997 * 120.31836 * 179.73603 * 7 6 5 35 35 H 1.08004 * 119.50707 * 180.02562 * 8 7 6 36 36 H 0.97005 * 119.99527 * 180.02562 * 11 10 9 37 37 H 1.09003 * 109.46773 * 60.00288 * 14 12 11 38 38 H 1.08999 * 109.47278 * 300.00338 * 14 12 11 39 39 H 1.07994 * 119.87972 * 0.02562 * 16 15 14 40 40 H 1.07999 * 119.74857 * 179.69674 * 17 16 15 41 41 H 1.08003 * 119.87126 * 180.30616 * 18 17 16 42 42 H 1.07997 * 120.12770 * 179.74712 * 19 18 17 43 43 H 0.97001 * 119.99614 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5784 -1.1690 0.0958 6 6 4.3160 -0.0708 -0.3295 7 6 5.6980 -0.1210 -0.2204 8 6 6.2953 -1.2488 0.3076 9 7 5.5713 -2.2762 0.7093 10 6 4.2513 -2.2720 0.6243 11 7 3.5262 -3.3812 1.0608 12 6 4.1709 -4.4511 1.5672 13 8 5.3812 -4.4493 1.6438 14 6 3.3876 -5.6488 2.0393 15 6 4.3375 -6.6982 2.5567 16 6 4.7616 -7.7139 1.7303 17 6 5.6304 -8.6838 2.2054 18 6 6.0911 -8.6366 3.5124 19 6 5.6805 -7.6304 4.3562 20 6 4.7939 -6.6435 3.8864 21 6 4.3654 -5.6044 4.7443 22 1 4.0588 -4.6548 4.3312 23 6 4.3386 -5.8064 6.1289 24 7 4.4034 -7.0196 6.6143 25 14 4.2102 -4.3439 7.2839 26 1 2.7797 -4.0471 7.5497 27 1 4.8958 -4.6612 8.5624 28 1 4.8532 -3.1609 6.6578 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3632 -0.8901 -0.5138 32 1 1.6982 -2.0060 -0.0652 33 1 3.8252 0.7998 -0.7389 34 1 6.3013 0.7137 -0.5457 35 1 7.3711 -1.2901 0.3940 36 1 2.5581 -3.3824 0.9999 37 1 2.8122 -6.0571 1.2084 38 1 2.7093 -5.3478 2.8377 39 1 4.4127 -7.7578 0.7092 40 1 5.9542 -9.4800 1.5514 41 1 6.7717 -9.3948 3.8706 42 1 6.0373 -7.5978 5.3750 43 1 4.3852 -7.1596 7.5739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753485247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:05 Heat of formation + Delta-G solvation = -18.340867 kcal Electronic energy + Delta-G solvation = -28555.901800 eV Core-core repulsion = 24565.505614 eV Total energy + Delta-G solvation = -3990.396186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.26330 -40.85320 -39.97732 -38.99839 -36.54794 -35.52226 -35.47961 -33.53385 -32.82697 -31.44475 -31.27462 -29.62527 -28.42603 -26.91111 -25.26888 -24.08241 -22.81991 -22.17000 -21.74882 -21.07348 -19.67202 -19.03242 -18.50368 -18.04211 -17.71771 -17.25660 -16.84534 -16.42002 -16.33290 -16.06137 -15.91721 -15.43263 -15.38787 -15.10064 -14.83719 -14.61197 -14.37447 -14.07289 -13.55628 -13.48206 -13.37860 -13.27748 -13.10307 -12.91018 -12.78588 -12.70778 -12.50691 -12.15623 -12.09148 -11.79659 -11.39869 -11.31885 -11.21748 -11.03100 -10.89199 -10.29755 -9.94169 -9.21412 -9.15926 -8.88470 -8.60291 -6.29789 -0.02099 0.31553 0.97963 1.12632 1.33320 1.43829 1.51386 1.51462 1.82741 1.87702 1.98609 2.17767 2.78110 2.91017 3.44743 3.66235 3.72209 3.85998 4.08998 4.13625 4.20052 4.41119 4.42615 4.51064 4.53977 4.62038 4.67568 4.72169 4.80118 4.83864 5.05892 5.08633 5.16242 5.19655 5.23000 5.29714 5.37357 5.55507 5.77672 5.82455 6.03409 6.15953 6.21820 6.25395 6.29514 6.41987 6.74087 6.98805 6.99670 7.07026 7.11906 7.44037 8.36078 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011193 B = 0.003433 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.006269 B = 8153.404631 C = 9029.159839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.508 3.492 3 O -0.570 6.570 4 N -0.654 5.654 5 C 0.060 3.940 6 C -0.078 4.078 7 C -0.176 4.176 8 C 0.093 3.907 9 N -0.503 5.503 10 C 0.325 3.675 11 N -0.655 5.655 12 C 0.505 3.495 13 O -0.504 6.504 14 C -0.064 4.064 15 C -0.189 4.189 16 C -0.088 4.088 17 C -0.242 4.242 18 C -0.117 4.117 19 C -0.194 4.194 20 C 0.099 3.901 21 C -0.482 4.482 22 H 0.068 0.932 23 C 0.040 3.960 24 N -0.824 5.824 25 Si 0.965 3.035 26 H -0.252 1.252 27 H -0.267 1.267 28 H -0.276 1.276 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.425 0.575 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.427 0.573 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 12.185 -13.275 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.299 3.701 3 O -0.449 6.449 4 N -0.302 5.302 5 C -0.040 4.040 6 C -0.106 4.106 7 C -0.197 4.197 8 C -0.064 4.064 9 N -0.217 5.217 10 C 0.091 3.909 11 N -0.305 5.305 12 C 0.292 3.708 13 O -0.373 6.373 14 C -0.104 4.104 15 C -0.190 4.190 16 C -0.106 4.106 17 C -0.261 4.261 18 C -0.135 4.135 19 C -0.213 4.213 20 C 0.097 3.903 21 C -0.512 4.512 22 H 0.086 0.914 23 C -0.175 4.175 24 N -0.451 5.451 25 Si 0.787 3.213 26 H -0.176 1.176 27 H -0.192 1.192 28 H -0.201 1.201 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.264 0.736 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.188 0.812 36 H 0.266 0.734 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.435 11.936 -12.584 19.744 hybrid contribution -0.472 0.560 0.617 0.958 sum -9.907 12.496 -11.966 19.937 Atomic orbital electron populations 1.21964 0.86230 1.07207 1.06751 1.21975 0.92739 0.81931 0.73449 1.90635 1.71322 1.32884 1.50029 1.43502 1.03228 1.11242 1.72202 1.18230 0.85066 0.95904 1.04796 1.22041 0.93938 0.98110 0.96493 1.22309 0.94939 1.00209 1.02267 1.23006 1.00923 0.88196 0.94278 1.67658 1.05195 1.30120 1.18754 1.18526 0.89019 0.87862 0.95466 1.43617 1.10772 1.14022 1.62100 1.21608 0.88822 0.83989 0.76342 1.90783 1.15951 1.80235 1.50342 1.20315 0.97071 0.90666 1.02313 1.19495 1.05143 0.99095 0.95304 1.20748 0.97300 0.94573 0.98008 1.20728 1.06506 1.02801 0.96109 1.20949 0.99843 0.98005 0.94726 1.21301 1.01861 0.98851 0.99328 1.17700 0.88835 0.91859 0.91952 1.19577 1.40701 0.99357 0.91528 0.91363 1.26569 0.91882 0.98713 1.00309 1.69870 1.36650 1.23148 1.15405 0.85459 0.79831 0.78483 0.77500 1.17610 1.19169 1.20052 0.86903 0.87927 0.86568 0.73559 0.81656 0.81439 0.81224 0.73377 0.85860 0.87863 0.86289 0.86721 0.87821 0.88688 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.31 71.24 0.73 -0.18 16 2 C 0.51 8.22 7.84 87.66 0.69 8.90 16 3 O -0.57 -14.20 14.07 -3.07 -0.04 -14.24 16 4 N -0.65 -10.37 5.18 -302.76 -1.57 -11.94 16 5 C 0.06 1.49 6.50 38.33 0.25 1.74 16 6 C -0.08 -1.92 8.90 22.56 0.20 -1.72 16 7 C -0.18 -4.08 10.10 22.36 0.23 -3.85 16 8 C 0.09 2.71 11.17 84.64 0.95 3.65 16 9 N -0.50 -18.58 7.87 -192.50 -1.52 -20.09 16 10 C 0.33 10.13 7.45 133.04 0.99 11.12 16 11 N -0.65 -18.52 5.37 -307.97 -1.65 -20.18 16 12 C 0.50 19.29 7.42 87.66 0.65 19.94 16 13 O -0.50 -24.95 14.29 -3.03 -0.04 -25.00 16 14 C -0.06 -2.29 5.18 29.10 0.15 -2.14 16 15 C -0.19 -8.84 4.43 -19.41 -0.09 -8.93 16 16 C -0.09 -3.88 9.66 22.22 0.21 -3.67 16 17 C -0.24 -10.96 10.05 22.46 0.23 -10.73 16 18 C -0.12 -5.78 10.02 22.22 0.22 -5.55 16 19 C -0.19 -10.77 8.68 22.73 0.20 -10.58 16 20 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 21 C -0.48 -26.07 8.14 23.46 0.19 -25.88 16 22 H 0.07 3.62 6.68 -2.91 -0.02 3.60 16 23 C 0.04 2.05 5.17 85.26 0.44 2.49 16 24 N -0.82 -43.76 10.96 21.83 0.24 -43.53 16 25 Si 0.97 39.86 29.59 68.60 2.03 41.89 16 26 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 27 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 29 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.12 -0.06 8.14 -2.38 -0.02 -0.08 16 32 H 0.43 3.54 7.38 -92.71 -0.68 2.85 16 33 H 0.17 4.00 5.62 -2.91 -0.02 3.98 16 34 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 36 H 0.43 7.48 7.12 -92.70 -0.66 6.82 16 37 H 0.12 3.22 8.05 -2.39 -0.02 3.20 16 38 H 0.10 3.60 7.06 -2.39 -0.02 3.58 16 39 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 42 H 0.10 5.55 6.22 -2.91 -0.02 5.53 16 43 H 0.29 13.79 8.30 -92.71 -0.77 13.03 16 Total: -1.00 -82.85 366.38 3.31 -79.55 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.26 Total: 33.65 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 6.12 Total: -20.11 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -4.50 Total: -95.73 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.09 Total: -39.24 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -82.85 3.31 -79.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753485247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.207 kcal (2) G-P(sol) polarization free energy of solvation -82.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds