Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47351 * 2 1 4 4 C 1.46906 * 110.99313 * 300.89402 * 3 2 1 5 5 C 1.50694 * 109.47273 * 288.95618 * 4 3 2 6 6 H 1.07998 * 120.00119 * 4.97322 * 5 4 3 7 7 C 1.37876 * 120.00266 * 184.97358 * 5 4 3 8 8 N 1.31516 * 119.99735 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00435 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46912 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47217 * 119.99511 * 9 7 5 12 12 H 1.48498 * 109.47212 * 240.00240 * 9 7 5 13 13 C 1.46892 * 111.00082 * 64.84505 * 3 2 1 14 14 C 1.53005 * 109.47251 * 66.04881 * 13 3 2 15 15 C 1.50694 * 109.47368 * 179.97438 * 14 13 3 16 16 O 1.21294 * 120.00018 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00190 * 179.97438 * 15 14 13 18 18 C 1.40039 * 120.00207 * 175.58335 * 17 15 14 19 19 C 1.38816 * 120.07712 * 34.61334 * 18 17 15 20 20 C 1.38144 * 119.95451 * 179.81409 * 19 18 17 21 21 N 1.48014 * 119.94433 * 180.20862 * 20 19 18 22 22 O 1.21801 * 119.99812 * 180.23029 * 21 20 19 23 23 O 1.21794 * 120.00301 * 0.22776 * 21 20 19 24 24 C 1.38280 * 120.10974 * 0.44094 * 20 19 18 25 25 C 1.38270 * 120.15805 * 359.78558 * 24 20 19 26 26 C 1.38301 * 120.04371 * 0.02562 * 25 24 20 27 27 F 1.35103 * 120.05469 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47187 * 65.10548 * 1 2 3 29 29 H 1.09004 * 109.46622 * 185.10350 * 1 2 3 30 30 H 1.08996 * 109.46820 * 305.10318 * 1 2 3 31 31 H 1.08999 * 109.47157 * 240.00155 * 2 1 3 32 32 H 1.09000 * 109.47357 * 119.99649 * 2 1 3 33 33 H 1.08995 * 109.47358 * 48.96401 * 4 3 2 34 34 H 1.09005 * 109.46811 * 168.96116 * 4 3 2 35 35 H 0.97003 * 120.00179 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47353 * 306.05155 * 13 3 2 37 37 H 1.08999 * 109.47532 * 186.04911 * 13 3 2 38 38 H 1.09000 * 109.46718 * 59.99885 * 14 13 3 39 39 H 1.08999 * 109.46876 * 300.00431 * 14 13 3 40 40 H 0.96997 * 119.99373 * 355.58691 * 17 15 14 41 41 H 1.07998 * 120.02182 * 359.97438 * 19 18 17 42 42 H 1.08005 * 119.92112 * 179.77166 * 24 20 19 43 43 H 1.08003 * 119.97855 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5313 2.1160 -1.1770 5 6 2.2276 1.6036 -2.4112 6 1 2.8996 0.7610 -2.3416 7 6 2.0070 2.2105 -3.6294 8 7 1.1891 3.2370 -3.7141 9 14 2.8696 1.5750 -5.1595 10 1 3.7308 0.4202 -4.7986 11 1 1.8565 1.1450 -6.1564 12 1 3.7079 2.6547 -5.7397 13 6 1.6457 2.0756 1.2413 14 6 2.3745 1.4320 2.4226 15 6 1.9912 2.1409 3.6960 16 8 1.2114 3.0693 3.6621 17 7 2.5140 1.7426 4.8726 18 6 2.2310 2.4581 6.0427 19 6 0.9861 3.0481 6.2134 20 6 0.7083 3.7501 7.3703 21 7 -0.6207 4.3752 7.5540 22 8 -0.8653 4.9980 8.5718 23 8 -1.4697 4.2670 6.6875 24 6 1.6713 3.8738 8.3548 25 6 2.9144 3.2919 8.1876 26 6 3.1982 2.5844 7.0337 27 9 4.4129 2.0162 6.8698 28 1 -0.3633 0.4326 -0.9322 29 1 -0.3633 -1.0237 0.0914 30 1 -0.3633 0.5909 0.8407 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.4564 1.9660 -1.2775 34 1 1.7401 3.1791 -1.0569 35 1 1.0336 3.6638 -4.5712 36 1 0.5690 1.9956 1.3914 37 1 1.9255 3.1267 1.1708 38 1 3.4511 1.5120 2.2726 39 1 2.0946 0.3809 2.4931 40 1 3.0864 0.9604 4.9089 41 1 0.2344 2.9562 5.4434 42 1 1.4521 4.4265 9.2565 43 1 3.6646 3.3907 8.9583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753917382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = -45.149167 kcal Electronic energy + Delta-G solvation = -28715.611786 eV Core-core repulsion = 24293.283880 eV Total energy + Delta-G solvation = -4422.327905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.81670 -42.47394 -41.00634 -39.18032 -37.39455 -36.81373 -35.47157 -32.84560 -32.14640 -31.82276 -30.33856 -29.20916 -26.81363 -26.50967 -24.60689 -23.66340 -23.05774 -22.43420 -20.88137 -19.95078 -19.10866 -18.98979 -18.51079 -17.81582 -17.67248 -17.19734 -16.84005 -16.32728 -16.20946 -15.96873 -15.06942 -14.93523 -14.85290 -14.37258 -14.20077 -14.12605 -13.83810 -13.42655 -13.05839 -12.85567 -12.57453 -12.47620 -11.93897 -11.82137 -11.69606 -11.53756 -11.36559 -11.31201 -11.24201 -11.04824 -10.76715 -10.71357 -10.54223 -10.25785 -10.05209 -9.94899 -9.76061 -9.23241 -9.06480 -8.43676 -7.27553 -6.02866 -4.04122 -0.67234 0.19648 0.82591 1.01708 2.12181 2.31508 2.62745 3.17011 3.29891 3.37499 3.41398 3.70892 4.00662 4.03247 4.30948 4.37257 4.45679 4.80263 4.93390 4.98549 5.05316 5.11609 5.26943 5.30501 5.37823 5.38142 5.65691 5.70157 5.84951 5.87699 6.00369 6.07743 6.18363 6.29078 6.44793 6.63062 6.72452 6.82711 7.26018 7.35328 7.38788 7.63671 7.78300 8.07613 8.16353 8.50874 9.02952 9.59647 11.07875 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.002216 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.273722 B =12631.460675 C =13467.990724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 N -0.535 5.535 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.065 3.935 14 C -0.132 4.132 15 C 0.518 3.482 16 O -0.507 6.507 17 N -0.675 5.675 18 C 0.127 3.873 19 C -0.037 4.037 20 C -0.036 4.036 21 N 0.029 4.971 22 O -0.158 6.158 23 O -0.145 6.145 24 C -0.046 4.046 25 C -0.132 4.132 26 C 0.124 3.876 27 F -0.117 7.117 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.000 1.000 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.421 0.579 41 H 0.181 0.819 42 H 0.165 0.835 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 -4.446 26.527 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.071 4.071 3 N -0.259 5.259 4 C 0.064 3.936 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.065 4.065 14 C -0.173 4.173 15 C 0.307 3.693 16 O -0.380 6.380 17 N -0.323 5.323 18 C 0.029 3.971 19 C -0.059 4.059 20 C -0.120 4.120 21 N 0.550 4.450 22 O -0.373 6.373 23 O -0.364 6.364 24 C -0.066 4.066 25 C -0.152 4.152 26 C 0.101 3.899 27 F -0.095 7.095 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.259 0.741 41 H 0.198 0.802 42 H 0.182 0.818 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.010 -3.995 26.120 26.894 hybrid contribution -0.224 -0.532 -0.790 0.978 sum 4.786 -4.527 25.330 26.173 Atomic orbital electron populations 1.22405 0.99292 1.00694 1.02602 1.22033 0.92271 0.91693 1.01147 1.62375 1.59475 1.01937 1.02116 1.19816 0.94183 0.93768 0.85875 1.21159 1.26194 1.15409 0.91476 0.91937 1.24989 0.95519 0.95072 0.99120 1.69969 1.36446 1.22103 1.25252 0.86464 0.79367 0.78787 0.82915 1.19722 1.21156 1.21064 1.21808 0.97170 0.98553 0.88929 1.21759 1.04261 1.00832 0.90400 1.21484 0.79502 0.83647 0.84624 1.90750 1.32617 1.28343 1.86293 1.43688 1.52477 1.31167 1.04920 1.17412 0.91975 0.99360 0.88349 1.21088 0.96255 0.92759 0.95772 1.20934 0.85541 1.06376 0.99145 1.43448 1.02417 0.99058 1.00104 1.94532 1.85291 1.39531 1.17961 1.94621 1.40649 1.64368 1.36735 1.20867 0.90576 0.96667 0.98521 1.20984 0.97840 0.98958 0.97447 1.17786 0.80179 0.96311 0.95622 1.91582 1.40304 1.82070 1.95585 0.91162 0.93472 0.93448 0.90173 0.93078 0.98208 0.95090 0.92969 0.94318 0.90575 0.87339 0.88270 0.74145 0.80189 0.81783 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.22 37.16 0.34 -2.89 16 2 C 0.06 0.99 5.73 -3.82 -0.02 0.97 16 3 N -0.54 -10.71 4.66 -236.07 -1.10 -11.81 16 4 C 0.19 4.75 4.55 -4.98 -0.02 4.73 16 5 C -0.50 -13.78 8.67 -34.44 -0.30 -14.08 16 6 H 0.06 1.69 7.27 -52.49 -0.38 1.30 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 C 0.06 1.10 4.08 -3.83 -0.02 1.08 16 14 C -0.13 -1.56 5.63 -27.88 -0.16 -1.72 16 15 C 0.52 6.07 7.68 -10.99 -0.08 5.99 16 16 O -0.51 -7.85 13.40 5.55 0.07 -7.77 16 17 N -0.68 -5.68 5.23 -9.81 -0.05 -5.73 16 18 C 0.13 1.12 6.32 -83.59 -0.53 0.59 16 19 C -0.04 -0.39 8.21 -39.40 -0.32 -0.72 16 20 C -0.04 -0.36 6.85 -79.97 -0.55 -0.91 16 21 N 0.03 0.35 4.45 33.95 0.15 0.50 16 22 O -0.16 -1.92 18.44 -29.46 -0.54 -2.47 16 23 O -0.15 -2.08 18.44 -29.46 -0.54 -2.62 16 24 C -0.05 -0.30 9.55 -39.55 -0.38 -0.68 16 25 C -0.13 -0.67 10.02 -39.55 -0.40 -1.07 16 26 C 0.12 0.85 7.31 -39.26 -0.29 0.57 16 27 F -0.12 -0.80 16.96 2.25 0.04 -0.76 16 28 H 0.07 1.40 6.44 -51.93 -0.33 1.07 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.77 6.18 -51.93 -0.32 0.45 16 31 H 0.08 1.53 7.13 -51.93 -0.37 1.16 16 32 H 0.05 0.71 6.26 -51.93 -0.33 0.39 16 33 H 0.00 0.01 5.86 -51.93 -0.30 -0.30 16 34 H 0.03 0.86 7.83 -51.93 -0.41 0.45 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.04 0.69 6.03 -51.93 -0.31 0.38 16 37 H 0.08 1.43 7.83 -51.93 -0.41 1.02 16 38 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.10 0.97 6.46 -51.93 -0.34 0.64 16 40 H 0.42 2.25 8.67 -40.82 -0.35 1.89 16 41 H 0.18 2.27 5.74 -52.49 -0.30 1.97 16 42 H 0.16 0.73 7.60 -52.48 -0.40 0.33 16 43 H 0.16 0.33 8.06 -52.48 -0.42 -0.09 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -32.84 366.95 -8.50 -41.34 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.96 Total: -0.04 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.81 Total: -6.71 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.26 Total: -42.87 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.01 Total: -12.86 kcal Atomic # 9 Polarization: -0.80 SS G_CDS: 0.04 Total: -0.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.84 -8.50 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753917382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.808 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds