Wall clock time and date at job start Sat Apr 11 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40094 * 126.03671 * 2 1 4 4 C 1.30828 * 108.20603 * 180.02562 * 3 2 1 5 5 C 1.39876 * 108.20502 * 359.78247 * 4 3 2 6 6 C 1.34945 * 126.03849 * 180.02562 * 2 1 3 7 7 C 1.50691 * 126.12973 * 359.94219 * 6 2 1 8 8 C 1.53005 * 109.47358 * 265.00200 * 7 6 2 9 9 O 1.45195 * 109.47143 * 179.97438 * 8 7 6 10 10 C 1.34870 * 116.99945 * 177.01422 * 9 8 7 11 11 O 1.21592 * 119.99916 * 5.42844 * 10 9 8 12 12 C 1.46711 * 120.00203 * 185.43144 * 10 9 8 13 13 C 1.36220 * 125.44838 * 174.48255 * 12 10 9 14 14 C 1.41658 * 107.74286 * 179.84952 * 13 12 10 15 15 C 1.40037 * 133.34269 * 180.18899 * 14 13 12 16 16 C 1.36564 * 119.83361 * 180.31072 * 15 14 13 17 17 C 1.38859 * 120.60277 * 359.95070 * 16 15 14 18 18 C 1.37837 * 120.63812 * 0.02562 * 17 16 15 19 19 C 1.39098 * 119.81460 * 0.02562 * 18 17 16 20 20 N 1.37815 * 133.14750 * 180.02562 * 19 18 17 21 21 C 1.36871 * 125.62465 * 0.02562 * 20 19 18 22 22 H 1.08003 * 120.00212 * 140.13373 * 21 20 19 23 23 C 1.39021 * 120.00162 * 320.13083 * 21 20 19 24 24 N 1.31341 * 119.99925 * 341.73819 * 23 21 20 25 25 Si 1.86796 * 120.00162 * 161.73261 * 23 21 20 26 26 H 1.48506 * 109.47199 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47147 * 120.00342 * 25 23 21 28 28 H 1.48506 * 109.47495 * 240.00638 * 25 23 21 29 29 H 1.08999 * 109.47262 * 269.97260 * 1 2 3 30 30 H 1.09006 * 109.47594 * 29.97305 * 1 2 3 31 31 H 1.09006 * 109.47397 * 149.97313 * 1 2 3 32 32 H 1.08009 * 125.90071 * 180.02562 * 4 3 2 33 33 H 1.08001 * 126.04099 * 180.23623 * 5 4 3 34 34 H 1.09008 * 109.46913 * 24.99923 * 7 6 2 35 35 H 1.09002 * 109.47899 * 145.00082 * 7 6 2 36 36 H 1.08999 * 109.47089 * 299.99888 * 8 7 6 37 37 H 1.09002 * 109.46575 * 59.99930 * 8 7 6 38 38 H 1.07995 * 126.12930 * 359.97438 * 13 12 10 39 39 H 1.08002 * 120.08169 * 0.30873 * 15 14 13 40 40 H 1.08001 * 119.70275 * 179.97438 * 16 15 14 41 41 H 1.07999 * 119.68190 * 180.02562 * 17 16 15 42 42 H 1.07998 * 120.09686 * 179.97438 * 18 17 16 43 43 H 0.97004 * 120.00060 * 185.12796 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5345 0.7323 -0.0006 5 6 3.5437 -0.6665 0.0041 6 6 2.2588 -1.0912 -0.0005 7 6 1.7974 -2.5257 0.0001 8 6 1.7620 -3.0496 1.4372 9 8 1.3168 -4.4316 1.4378 10 6 1.2891 -5.0654 2.6280 11 8 1.5324 -4.4520 3.6492 12 6 0.9653 -6.4950 2.6904 13 6 1.0090 -7.2667 3.8121 14 6 0.6231 -8.5801 3.4477 15 6 0.4812 -9.7741 4.1655 16 6 0.0881 -10.9119 3.5205 17 6 -0.1739 -10.8969 2.1569 18 6 -0.0417 -9.7339 1.4290 19 6 0.3583 -8.5625 2.0636 20 7 0.5743 -7.2762 1.6187 21 6 0.4237 -6.8427 0.3293 22 1 -0.0138 -5.8751 0.1324 23 6 0.8341 -7.6478 -0.7272 24 7 1.6729 -8.6355 -0.5128 25 14 0.1924 -7.3250 -2.4515 26 1 -0.7320 -6.1631 -2.4263 27 1 1.3322 -7.0306 -3.3568 28 1 -0.5327 -8.5244 -2.9425 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5143 32 1 4.4054 1.3712 -0.0003 33 1 4.4211 -1.2962 0.0085 34 1 0.7991 -2.5864 -0.4334 35 1 2.4870 -3.1296 -0.5898 36 1 2.7602 -2.9889 1.8708 37 1 1.0723 -2.4457 2.0271 38 1 1.2859 -6.9359 4.8021 39 1 0.6820 -9.7951 5.2264 40 1 -0.0203 -11.8317 4.0761 41 1 -0.4842 -11.8052 1.6620 42 1 -0.2474 -9.7323 0.3688 43 1 2.0170 -9.1502 -1.2595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759917192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:13 Heat of formation + Delta-G solvation = 51.332759 kcal Electronic energy + Delta-G solvation = -28503.411385 eV Core-core repulsion = 24516.036475 eV Total energy + Delta-G solvation = -3987.374910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35450 -40.55535 -39.32777 -36.19269 -35.93913 -33.78015 -33.66116 -32.79831 -30.80329 -29.25018 -28.78736 -28.03011 -26.85776 -25.01482 -24.38398 -22.72772 -21.25439 -21.07324 -20.46913 -19.82581 -19.25977 -18.09663 -17.26349 -16.62811 -16.11453 -16.08825 -15.54417 -15.35121 -14.88859 -14.74628 -14.58464 -14.17046 -13.74483 -13.66540 -13.23661 -13.10074 -12.98084 -12.85613 -12.68112 -12.56628 -12.47011 -12.02479 -11.83591 -11.78326 -11.56730 -11.39173 -11.19636 -10.82151 -10.75790 -10.64905 -10.32064 -10.18983 -10.06811 -9.85806 -9.40092 -9.26379 -8.73251 -8.63443 -7.24103 -6.95834 -6.69607 -4.53450 1.61314 1.68954 2.37143 2.69455 2.70453 2.85535 2.92598 2.95299 2.99988 3.19123 3.68808 4.04710 4.42135 4.42890 4.56579 4.62660 4.81327 4.94296 5.01429 5.03809 5.04258 5.24446 5.34510 5.45419 5.58614 5.67557 5.71649 5.78603 5.90893 5.92762 6.09488 6.10677 6.34857 6.47969 6.54279 6.58837 6.77363 6.85777 6.90182 6.95217 7.03013 7.08797 7.42644 7.52433 7.58394 7.60035 7.83951 7.94374 8.28327 8.38532 8.72843 9.20273 10.10363 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.003240 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.674528 B = 8640.132415 C =10061.863072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.371 5.371 3 N -0.300 5.300 4 C 0.046 3.954 5 C -0.267 4.267 6 C 0.092 3.908 7 C -0.058 4.058 8 C 0.074 3.926 9 O -0.332 6.332 10 C 0.547 3.453 11 O -0.526 6.526 12 C -0.022 4.022 13 C -0.161 4.161 14 C -0.131 4.131 15 C -0.085 4.085 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.052 4.052 19 C 0.092 3.908 20 N -0.236 5.236 21 C -0.343 4.343 22 H 0.117 0.883 23 C 0.055 3.945 24 N -0.815 5.815 25 Si 0.928 3.072 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.133 0.867 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 7.992 -2.063 8.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.154 5.154 3 N -0.122 5.122 4 C -0.140 4.140 5 C -0.297 4.297 6 C -0.036 4.036 7 C -0.097 4.097 8 C -0.002 4.002 9 O -0.248 6.248 10 C 0.395 3.605 11 O -0.417 6.417 12 C -0.135 4.135 13 C -0.189 4.189 14 C -0.136 4.136 15 C -0.104 4.104 16 C -0.176 4.176 17 C -0.168 4.168 18 C -0.072 4.072 19 C -0.024 4.024 20 N 0.102 4.898 21 C -0.471 4.471 22 H 0.134 0.866 23 C -0.159 4.159 24 N -0.443 5.443 25 Si 0.752 3.248 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.200 0.800 33 H 0.167 0.833 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.799 9.222 -2.255 9.662 hybrid contribution 0.614 -0.467 -0.842 1.142 sum -1.185 8.755 -3.097 9.362 Atomic orbital electron populations 1.21909 0.74356 1.04605 1.03680 1.48524 1.06595 1.03374 1.56882 1.77343 1.01914 1.07895 1.25008 1.23827 0.95203 0.95069 0.99882 1.21325 0.96373 0.95098 1.16870 1.20822 0.91390 0.89807 1.01574 1.20116 1.04101 0.88324 0.97179 1.22745 1.00657 0.80702 0.96061 1.86826 1.78226 1.25839 1.33930 1.20047 0.73258 0.86344 0.80815 1.90799 1.48552 1.66792 1.35546 1.19038 1.15365 0.88596 0.90521 1.20298 1.10285 0.91554 0.96716 1.17925 1.08657 0.93718 0.93262 1.20055 1.00766 0.91492 0.98062 1.20285 1.05329 0.97239 0.94756 1.20569 1.05354 0.96717 0.94206 1.20074 0.98365 0.90013 0.98737 1.18146 1.05405 0.86987 0.91902 1.40109 1.38872 1.05185 1.05603 1.19944 1.42723 1.05583 0.78828 0.86583 1.25672 0.94005 0.94940 1.01241 1.69964 1.22638 1.17558 1.34114 0.85848 0.79387 0.79465 0.80121 1.18401 1.19821 1.19625 0.90536 0.89236 0.89165 0.79969 0.83268 0.89418 0.87529 0.90894 0.91798 0.84874 0.87646 0.87805 0.87587 0.86868 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.86 11.27 59.84 0.67 1.53 16 2 N -0.37 -4.63 4.01 -63.89 -0.26 -4.89 16 3 N -0.30 -4.05 12.58 30.63 0.39 -3.66 16 4 C 0.05 0.53 12.03 -17.37 -0.21 0.32 16 5 C -0.27 -3.22 10.72 -40.01 -0.43 -3.65 16 6 C 0.09 1.15 6.18 -82.27 -0.51 0.65 16 7 C -0.06 -0.73 5.88 -27.88 -0.16 -0.89 16 8 C 0.07 1.12 5.47 37.16 0.20 1.33 16 9 O -0.33 -6.50 8.06 -40.96 -0.33 -6.83 16 10 C 0.55 12.06 7.90 34.15 0.27 12.33 16 11 O -0.53 -11.86 16.65 -19.33 -0.32 -12.18 16 12 C -0.02 -0.52 6.76 -82.27 -0.56 -1.08 16 13 C -0.16 -3.67 10.55 -39.00 -0.41 -4.08 16 14 C -0.13 -3.02 6.16 -106.90 -0.66 -3.68 16 15 C -0.08 -1.69 10.06 -39.51 -0.40 -2.09 16 16 C -0.16 -2.94 9.97 -39.96 -0.40 -3.33 16 17 C -0.15 -2.92 10.02 -39.50 -0.40 -3.31 16 18 C -0.05 -1.19 8.62 -39.41 -0.34 -1.53 16 19 C 0.09 2.25 6.08 -83.83 -0.51 1.74 16 20 N -0.24 -5.89 2.82 -56.10 -0.16 -6.05 16 21 C -0.34 -8.27 8.67 -15.01 -0.13 -8.40 16 22 H 0.12 2.69 6.95 -52.48 -0.36 2.32 16 23 C 0.06 1.28 4.40 -17.47 -0.08 1.20 16 24 N -0.81 -19.99 11.14 55.50 0.62 -19.38 16 25 Si 0.93 17.55 29.59 -169.99 -5.03 12.52 16 26 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 27 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 28 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.68 6.98 -51.93 -0.36 0.31 16 32 H 0.18 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.09 1.00 6.95 -51.92 -0.36 0.64 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.12 8.13 -51.93 -0.42 0.69 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.13 2.75 8.06 -52.49 -0.42 2.33 16 39 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.11 2.62 6.57 -52.49 -0.34 2.28 16 43 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -30.22 371.72 -8.75 -38.96 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.22 Total: 8.87 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -4.04 Total: -12.96 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.59 Total: -33.98 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.65 Total: -19.01 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.22 -8.75 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759917192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.296 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds